SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8332

Length: 1686 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8332

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	RING zinc finger protein-like	-	-	3.649e-13	-

Source	Gene names
Sma3	At1g69330; At1g74370; At3g29270; F10D13.3; F1M20.5; F23O10.9; GSVIVT00021036001; LOC_Os03g11260; LOC_Os03g31320; OSJNBa0083F15.23; Os03g0211100; Os03g0427100; OsI_10489; OsI_12137; OsJ_09880; OsJ_11347; PHYPADRAFT_17579; PHYPADRAFT_47096; POPTRDRAFT_72855

Source	GOs	Term	Type	Identity
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G29270.1	RING/U-box superfamily protein chr3:11235326-11236117 FORWARD LENGTH=263	59%
RefSeq	Arabidopsis thaliana	NP_974376.1	RING/U-box domain-containing protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002323884.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAG2

Fln msg:

Fln protein: MWSFASNAISGTMGFKGRETSVCSDDEASSRKSAEERLECPICWESFNIVENVPYVLWCGHTLCKNCVLGLQWATVKFPTLPVQLPLFISCPWCQLLSFRLVWKGCLKFPRKNFFLLWMVESMNDERRLHGSIGGDQGVLPTNVGLDSGSASILSANHRPCAHVEHPSRRSNGIIDVVRNYMNANMLHASFRKSLIIFVQMTAKFPLVIIFLLIVLYVIPASAAILALYCLITILFALPSFLILYFAYPSLDWLVREIVT*

Protein Length: 262

Fln nts: ATGGGGAAGGGTTGACATTTTCAAACAGTTGATCCTCACATAAGTCAGGGATATAGAACGCAGAGTAAGATGGGGAAGCTGAAGTTCCATAAGGCTTGGGATCAGCACTGTCATTCGTCTCATTCTTCTTTCTTTAATGGCTGAAACAGACGGTGGAGGGTTTGGAGATCCAGTGCCAATTCCAGTCTCTATGATCTCTACCCATCTTCCAATGGTTCTGAATCTCACAGCACAGTAGTGAATTAACTATGGTTGCTGCCTAATTAAACGCCTCAACAGTTCAAGGATTAAAAGGTCAAGATAGAAGGGACTAAAGCTAATAATAGATATTGTACCTTTTTCAAGGTGTGACAATTCTTATCTAAGCAAAATTCAATTGACCCTAATGGTTACCCCCATTTGGGATTTAATCTGGGTGATCAGCAGCCTATTGTTGCTCAAGTTGGAAGTCCTGACATGGTGATTTGATCATATTCTCTTTTTCGAGGAAGACCATTATGCCATTATTTCACAAGGGTTGAATCCTTTCAGAAGATCCAGAGCATCCAATC_-_ATGTGGAGCTTTGCATCAAATGCTATATCTGGAACAATGGGGTTTAAGGGCAGAGAAACTTCTGTATGCTCAGATGATGAAGCTTCTTCCAGGAAAAGTGCAGAGGAAAGATTGGAGTGTCCTATATGCTGGGAGTCATTCAATATTGTAGAGAATGTACCATATGTCTTGTGGTGTGGTCACACTCTCTGCAAAAACTGTGTTCTTGGCCTTCAATGGGCAACTGTGAAATTTCCTACGCTACCTGTTCAGCTGCCTCTGTTCATTTCTTGCCCATGGTGCCAACTCTTATCCTTTAGGTTGGTTTGGAAAGGATGCCTTAAGTTTCCACGAAAGAACTTCTTTTTACTTTGGATGGTAGAAAGTATGAATGATGAAAGAAGGCTTCATGGATCCATTGGAGGGGATCAGGGAGTTCTGCCTACAAATGTTGGTCTGGATTCTGGAAGTGCATCTATCTTGTCAGCTAATCACAGACCTTGTGCACATGTGGAGCATCCATCTCGAAGGTCAAATGGTATAATCGATGTGGTTCGCAATTATATGAATGCAAATATGCTGCATGCCTCATTCCGTAAGTCATTGATTATCTTTGTGCAGATGACAGCAAAATTTCCTCTAGTCATTATATTCCTTTTGATTGTCTTATATGTAATACCTGCGAGTGCTGCAATTCTGGCTCTGTACTGTCTGATAACTATTCTATTTGCCTTGCCATCCTTCCTTATTTTGTACTTTGCTTATCCTAGTCTTGATTGGCTTGTCCGTGAAATAGTAACATGA___CACGAGGAATCTTCTGCTGCAGTTTCAATATGTTGGATAGACTAGGCTAGTTGCAATGCACCAATTATTTCTGGACATTGCACCAGTTTTATAAGGTCTCTGGTAGGCATTGAGTGATGTAGGTCTTAGAATGACCTGGTTTGAGTTATAGCAGGTATCACATCAGTGGTTCCCTGTTTGGATACATAGTGTTGAGTCCCAGTCCTGGACTTGTGCATTTGGGAACTTGAATCATGTAGTGCTGGTGGCATATTTGATAAACATGATGTTTGATGCTTTTGAAAATTGTACATATTGCTTAATTTAGATATATAATCTAAAGGGGACCTTATCTACTTTAAAAAAACGGGCA

Fln Alignment:

Contig8332___MWSFASNAISGTMGFKGRETSVCSDDEASSRKSAEERLECPICWESFNIVENVPYVLWCGHTLCKNCVLGLQWATVKFPTLPVQLPLFISCPWCQLLSFRLVWKGCLKFPRKNFFLLWMVESMNDERRLHGSIGGDQGVLPTNVGLDSGSASILSANHRPCAHVEHPSRRSNGIIDVVRNYMNANMLHASFRKSLIIFVQMTAKFPXXXXXXXXXXXXXPASAAILALYCLITILFALPSFLILYFAYPSLDWLVREIVT
D5AAG2______________MWSFASNAISGTMGFKGRQASVCSDDEASSRKSAEEKLECPICWESFNIVENVPYVLWCGHTLCKNCVLGLQWATVKFPTLPVQLPLFISCPWCQLLSFRLVWKGSLKFPRKNFFLLWMVESMNDERRLHGSIGGDQGVLPTNAGLDSGSASILSANHRPCAHVDHPSQRSNGIMDVVHNYMNANMLHASFRKSLVIFVQMTAKFPLVIIFLLIVLYVIPASAAILALYCLITILFALPSFLILYFAYPSLDWLVREIVT

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
236	11	88			0.923564
237	88			11	0.923564
249	88		11		0.923564
279	72		27		1.0
342	16			83	0.994512
344			16	83	0.994512
345		83	16		0.994512
346	83		16		0.994512
794	9		90		1.0
1048	83		16		0.994512
1277		90		10	0.90298
1663	88		11		0.923564
1676	20	20		60	0.99255
1677	80	20			0.995493
1678	75		25		0.996473
1679	75			25	0.996473
1680	33			66	0.997452
1681	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain