SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8328

Length: 2367 nt

UniGene Fasta

>sp_v3.0_unigene8328
CGTCGTGACCTTGGCTGTCACTCTATCCCGCCTCTCCTGGAGATCGTCGACGCAACGGGCCACTCGGTCGCGTGACGGATCTTTATTCGCTTTCTTACCCTACAATCCCCGGCCTTCGCCTATAAATCAAAGTCCCCGAGCCCTTATCCGGAGCTAAATAGACGTTACGCAATGTCACGCTGGTGGAGATTCCAAATGACCGTAGGGGAGGTATGAAGACCGCAGCAATAACCCCCTGGTTCCATCCCTGCTCTGTCCTGGACCCGCACGCGGCTCTACACTCGCCCAGGCTGGGCACCGCTCGCAGGAGCTTCCGCGGTTCTATGAGCAGCGCTACCGGGATTCCCAGGCACCATGGACTCATTGCAAAGGACTGCGCGCGCAGACATTCATTTGTGCCGAGGAACTTCGGCAGGAAGAGATCGAGACCCGTTGGCGGCCGATCGGGGCCCAAATACCAGGGGTTAGCCGGCCAATTTCTCAGACCCGCGGGTTTTGTGTTGAGTATGGCGGGCCATGGGAATGGCAGCTCTGGTTGTTTAGACAATTCAAAGAAAAGAAGGGTACCTGTTTTTGTCATGATGCCATTAGATACATTTAGCATAACTGATTCAGGACTAGCAAAAATTAGACGAGTCAAGGCCTTAACTGTATCGCTACGTGCACTCAAGTTGGCAGGTGTTCATGGGGTCATGGTTGAGATTTGGTGGGGAGTTGTTGAACGTGCTTCACCCATGCAATATGACTGGTCAGTCTATGAAGATATTTTTAAGATGGTATGTGAGGCAGACTTAAAGCTGCATGTAGTGTTGTCATTCCATGCATGTTTGTACCCCTTTTCAAGTCCCAGAGCCAATATCAGCCTACCATTATGGGTTAATGAGATTGGAAATCTTAACAAGGACATCTACTACAGAGATCGGCGTGGATATTCTAGCGATGAGTATCTATCTGCTGGAGTGGATCAAATACCTATCTTATATGGACGTACAGCTGTTGAATGCTATGAAGATTTCATGGTCAGTTTCATAGACAAATTTCAATCACTCATGGGAAATCCAATTCAAGAAATTACTATTGGCCTTGGTCCGTCAGGTGAACTAAGGTACCCTGCCCATCCTTTTTCTGATGGGAGATGGAAGTTCCCTGGTATTGGAGAATTCCAGTGCTATGATAAATACATGATGGCAGACTTGAAGCAAGCTGCATTTCAGGCAGGGAAGCCAGAATGGGGATATGCCGGGCCACAAGATGCTGGTAGTTACAACAGTTTTCCTTCTGGGGAACCCTTTTTCAAGGAAGGGCAGGGCACCTTTTTATCAGATTATGGCCATTTCTTCCTGGAGTGGTACAGTGGGAAGCTTATTGAGCATGCTGATCATATCCTTAGTAAAGCTGTCAAGGTTTTAAAGACATGCCAACAAGATCGGCCAGATGCTGTCCTATTAGTTGCAAAAGTTGCGGGAATACATTGGTGGTATGACACAGAGTCTCATGCAGCAGAACTTACTGCTGGGTACTATAACACTTCCTATAGAGATGGGTATGATTCAATCGCCGCAGTCTTTGCAAGACATGGCGCAGCTTTAAATATTCCTTGTCTGGAGATGTTTGATAGTGAACAGCCAGAGATATGCTGCTGCAGTCCGGAGGGTCTCATTAGGCAGATGAGAGAAGTTGCAAGGCGAGGAAATATACCTTTAACAGGTGAAAATGCAATTGAACGCTTTGATAAGGAGGCTTTCTCTCAAATTGTGAGAAATGCTTACCATCGTCCTCAAGATGTGAGAGCCTTTACGTATTTCCGAATGAGGGAGGCACTGTTCAGGACTGATAATTGGAAATCATTCGTGAACTTTGTTAAGCAGATGTACAATAAGTCTCAAGATGGAGGCTGCAATGGTAAAATGTACAGTAAATTATGTAAAACTGGTTGATATTATTGGCATATCTAAGAGATAGTTCAATGTTCTTTCCATATTTGACTAACTAAGAGTTAGCTCATTGTTCTTCCATATTTGACTAATGTGTGTTAATTATAACACAACTTCCTCTGTAAATTATGTAATATTTGATACTGTATTTTCTACAGTTCTGATAATTTTCAACAGACGTCTTTAAAGATGTCTCAACAAAAGTAGAGAATTTGAAATTACAAGCAATTTTTAAGTTATATTTTGCAGTACTTCGAGGATGGTTACCAGTCATTTGCTTTCCTCTTTTGTAACCTCGTTGAAACTCCTCATGAATAGTTTCTAAAGGAAATAGTCAAAATTTAATCTACACGAACCCTCTTAGAAATGAGGAAGAAAATTTTATTTAAAGTTTGTGCCAAGACGGCCATAATGTGTTTCCAGTATTGATTAC

Ace file of the UniGene sp_v3.0_unigene8328

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative beta-amylase [Arabidopsis thaliana] gb\|AAN71908.1\| putative beta-amylase [Arabidopsis thaliana]	-	-	59%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Sma3	Beta-amylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-amylase.	EC:3.2.1.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	AMY1; AMYB; AMYB1; AMYB2; AMYB3; AT4G15210; AT4g00490; AT4g17090; AT5G55700; Amy2; At2g32290; At2g45880; At3g23920; At4g15210; At4g17090; At5g55700; BA1; BAM1; BAM2; BMY1; Bamy2; Bmy1; CHLREDRAFT_112511; CHLREDRAFT_129211; CHLREDRAFT_183141; F6N23.1; GSVI

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	beta-amylase activity	GO:0016161	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	maltose biosynthetic process	GO:0000024	Biological Process	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	starch catabolic process	GO:0005983	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G55700.1	BMY6, BAM4 beta-amylase 4 chr5:22551873-22554702 FORWARD LENGTH=531	59%
RefSeq	Arabidopsis thaliana	NP_568829.2	inactive beta-amylase 4 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002326690.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: your sequence is longer than subject: 575 - 492

Fln protein: MKTAAITPWFHPCSVLDPHAALHSPRLGTARRSFRGSMSSATGIPRHHGLIAKDCARRHSFVPRNFGRKRSRPVGGRSGPKYQGLAGQFLRPAGFVLSMAGHGNGSSGCLDNSKKRRVPVFVMMPLDTFSITDSGLAKIRRVKALTVSLRALKLAGVHGVMVEIWWGVVERASPMQYDWSVYEDIFKMVCEADLKLHVVLSFHACLYPFSSPRANISLPLWVNEIGNLNKDIYYRDRRGYSSDEYLSAGVDQIPILYGRTAVECYEDFMVSFIDKFQSLMGNPIQEITIGLGPSGELRYPAHPFSDGRWKFPGIGEFQCYDKYMMADLKQAAFQAGKPEWGYAGPQDAGSYNSFPSGEPFFKEGQGTFLSDYGHFFLEWYSGKLIEHADHILSKAVKVLKTCQQDRPDAVLLVAKVAGIHWWYDTESHAAELTAGYYNTSYRDGYDSIAAVFARHGAALNIPCLEMFDSEQPEICCCSPEGLIRQMREVARRGNIPLTGENAIERFDKEAFSQIVRNAYHRPQDVRAFTYFRMREALFRTDNWKSFVNFVKQMYNKSQDGGCNGKMYSKLCKTG*

Protein Length: 576

Fln nts: CGTCGTGACCTTGGCTGTCACTCTATCCCGCCTCTCCTGGAGATCGTCGACGCAACGGGCCACTCGGTCGCGTGACGGATCTTTATTCGCTTTCTTACCCTACAATCCCCGGCCTTCGCCTATAAATCAAAGTCCCCGAGCCCTTATCCGGAGCTAAATAGACGTTACGCAATGTCACGCTGGTGGAGATTCCAAATGACCGTAGGGGAGGT_-_ATGAAGACCGCAGCAATAACCCCCTGGTTCCATCCCTGCTCTGTCCTGGACCCGCACGCGGCTCTACACTCGCCCAGGCTGGGCACCGCTCGCAGGAGCTTCCGCGGTTCTATGAGCAGCGCTACCGGGATTCCCAGGCACCATGGACTCATTGCAAAGGACTGCGCGCGCAGACATTCATTTGTGCCGAGGAACTTCGGCAGGAAGAGATCGAGACCCGTTGGCGGCCGATCGGGGCCCAAATACCAGGGGTTAGCCGGCCAATTTCTCAGACCCGCGGGTTTTGTGTTGAGTATGGCGGGCCATGGGAATGGCAGCTCTGGTTGTTTAGACAATTCAAAGAAAAGAAGGGTACCTGTTTTTGTCATGATGCCATTAGATACATTTAGCATAACTGATTCAGGACTAGCAAAAATTAGACGAGTCAAGGCCTTAACTGTATCGCTACGTGCACTCAAGTTGGCAGGTGTTCATGGGGTCATGGTTGAGATTTGGTGGGGAGTTGTTGAACGTGCTTCACCCATGCAATATGACTGGTCAGTCTATGAAGATATTTTTAAGATGGTATGTGAGGCAGACTTAAAGCTGCATGTAGTGTTGTCATTCCATGCATGTTTGTACCCCTTTTCAAGTCCCAGAGCCAATATCAGCCTACCATTATGGGTTAATGAGATTGGAAATCTTAACAAGGACATCTACTACAGAGATCGGCGTGGATATTCTAGCGATGAGTATCTATCTGCTGGAGTGGATCAAATACCTATCTTATATGGACGTACAGCTGTTGAATGCTATGAAGATTTCATGGTCAGTTTCATAGACAAATTTCAATCACTCATGGGAAATCCAATTCAAGAAATTACTATTGGCCTTGGTCCGTCAGGTGAACTAAGGTACCCTGCCCATCCTTTTTCTGATGGGAGATGGAAGTTCCCTGGTATTGGAGAATTCCAGTGCTATGATAAATACATGATGGCAGACTTGAAGCAAGCTGCATTTCAGGCAGGGAAGCCAGAATGGGGATATGCCGGGCCACAAGATGCTGGTAGTTACAACAGTTTTCCTTCTGGGGAACCCTTTTTCAAGGAAGGGCAGGGCACCTTTTTATCAGATTATGGCCATTTCTTCCTGGAGTGGTACAGTGGGAAGCTTATTGAGCATGCTGATCATATCCTTAGTAAAGCTGTCAAGGTTTTAAAGACATGCCAACAAGATCGGCCAGATGCTGTCCTATTAGTTGCAAAAGTTGCGGGAATACATTGGTGGTATGACACAGAGTCTCATGCAGCAGAACTTACTGCTGGGTACTATAACACTTCCTATAGAGATGGGTATGATTCAATCGCCGCAGTCTTTGCAAGACATGGCGCAGCTTTAAATATTCCTTGTCTGGAGATGTTTGATAGTGAACAGCCAGAGATATGCTGCTGCAGTCCGGAGGGTCTCATTAGGCAGATGAGAGAAGTTGCAAGGCGAGGAAATATACCTTTAACAGGTGAAAATGCAATTGAACGCTTTGATAAGGAGGCTTTCTCTCAAATTGTGAGAAATGCTTACCATCGTCCTCAAGATGTGAGAGCCTTTACGTATTTCCGAATGAGGGAGGCACTGTTCAGGACTGATAATTGGAAATCATTCGTGAACTTTGTTAAGCAGATGTACAATAAGTCTCAAGATGGAGGCTGCAATGGTAAAATGTACAGTAAATTATGTAAAACTGGTTGA___TATTATTGGCATATCTAAGAGATAGTTCAATGTTCTTTCCATATTTGACTAACTAAGAGTTAGCTCATTGTTCTTCCATATTTGACTAATGTGTGTTAATTATAACACAACTTCCTCTGTAAATTATGTAATATTTGATACTGTATTTTCTACAGTTCTGATAATTTTCAACAGACGTCTTTAAAGATGTCTCAACAAAAGTAGAGAATTTGAAATTACAAGCAATTTTTAAGTTATATTTTGCAGTACTTCGAGGATGGTTACCAGTCATTTGCTTTCCTCTTTTGTAACCTCGTTGAAACTCCTCATGAATAGTTTCTAAAGGAAATAGTCAAAATTTAATCTACACGAACCCTCTTAGAAATGAGGAAGAAAATTTTATTTAAAGTTTGTGCCAAGACGGCCATAATGTGTTTCCAGTATTGATTAC

Fln Alignment:

Contig8328___VPVFVMMPLDTFSITDSGLAKIRRVKALTVSLRALKLAGVHGVMVEIWWGVVERASPMQYDWSVYEDIFKMVCEADLKLHVVLSFHACLYPFSSPRANISLPLWVNEIGNLNKDIYYRDRRGYSSDEYLSAGVDQIPILYGRTAVECYEDFMVSFIDKFQSLMGNPIQEITIGLGPSGELRYPAHPFSDGRWKFPGIGEFQCYDKYMMADLKQAAFQAGKPEWGYAGPQDAGSYNSFPSGEPFFKEGQGTFLSDYGHFFLEWYSGKLIEHADHILSKAVKVLKTCQQDRPDAVLLVAKVAGIHWWYDTESHAAELTAGYYNTSYRDGYDSIAAVFARHGAALNIPCLEMFDSEQPEICCCSPEGLIRQMREVARRGNIPLTGENAIERFDKEAFSQIVRNAYHR-----PQD----VRAFTYFRMREALFRTDNWKSFVNFVKQM
A9NVE4______________VPVFVKLPLDSVTSKHT----VNRRKAMDASLMALKSAGVEGVMVNVWWGLVEREAPGEYNWSAYRELLEMVRKRGLKVQAVMSFHKCGGNVGDS-VSIPLPKWVVEEIDRDNDLAYTDQWERRNYEYISLGCDNLPVLKGRTPVQCYSDFMRSFKENFTDLMGETVVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCYDKYMLANLKATAETAGKKEWGCGGPTNAGYYNNWSEETEFFC-SEGGWNSPYGEFFLQWYSNMLLNHGERILAEAESIF------HKSGARLSGKVAGIHWHYLTRSHAPELTAGYYNTGDRDGYLPIAQMFGRHGVVFIFTCIEMKDVEQPADAKCSPEKLIKQVIKATRKARIHLAGENALPRFDEAAYTQVLNNSCLRLEQDNPDDKIEPMCAFTYLRMSQHLFQSKNWSTFVSFVRRM

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
148		83	16		0.994512
149		83	16		0.994512
403			85	14	0.993533
579		88	11		0.923564
928			88	11	0.923564
929			88	11	0.923564
930	88	11			0.923564
931			11	88	0.923564
932	77	11	11		0.968132
1923	95		5		0.997749
2058		5		94	0.998744
2246	37		62		1.0
2271		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain