SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8318

Length: 2745 nt

UniGene Fasta

>sp_v3.0_unigene8318
ATGGGGAACGTGAAGTAAAAGCAAAACACCAACAGATTATTAGCGGGGTTTCTGTTCTTGCTTATTGGATCTCAACTTATGTATGGGATTTCATCAGTTATCTTCTTCCAGCATCACTTGCAATGTTTCTATTTTATGTTTTTGGTCTAGAGCAGTTTATTGGCAGGGATAGCTTTGGACCAACTTTATTCATGTTGTTGGGATATGGGCCAGCAGTGGCAGCTTTAACATATTGCCTTACATTCCTTTTTACTGATTATTCTGTTGCCCAAAATGTGGTGTTGCTGGTACATTTTTTCAGTGGCCTTGTTCTTATGGTCATCTCATTCATTATGGGTCTCATCCGTGCAACCAAACATGCAAACTCATTACTTAAGAACTTTTTCAGGGTATCACCAGGATTCTGCCTTGCTGACGGACTTGCATCCCTTGCGTTGCGAAGGCAAGGTATGAAGCTTGGATCTGGAGAGGGACCTCTAGATTGGAATGTAACTGGTGCATCTGTATTTTATCTACTTTTGGAGAGTGTTATATATTTCATATTTGTTCTTGGGTTTGACCTCCTGCCTGGTCCATCTATCTGTTGGGCTTCAATAAGATCTTGGTGTACATGGCTGGTGGGTAACAAGCGCTATTTACTATGGCCAAAGGGTCTTACGGAGCCTTTCATTGTTTCTTCTGTTTGAATCACATGCTTCAAATTTTGAGGATGAGGATGAAGATGTAACGGCAGAGAGGGTGAGAGTTCTATCTGGTGCAGCGAAAGACAGCATAATTTACCTACAGAATCTCAGAAAGATATATCCATCAAGTGGAAATCAGCCAGAGAAGGTTGCAGTTGATTCCTTGAGCTTTGCAGTTCAAGAAGGAGAGTGTTTTGGATTTCTCGGCACAAATGGTGCTGGAAAGAGTACAACACTGTCAATGCTATGTGGCGAAGAGCATCCTACGGGAGGAACTGCATATATTTTTGGCAAGGATATTCTTGCACATCCAAAGGCAGCACATCAGCATGTAGGTTATTGTCCTCAGTTTGATGCCCTTCTAGAGTTACTTACTGTTCGAGAACATCTCGAGCTCTATGCACGGATCAAGGGAGTTTCAAAGGAAATATTAGATCAAGTTGTCGAAGGAAAGCTCGCAGAATTTGATTTATGGCCACAAGCAAACAAACCTTCCTGTTCTCTAAGTGGTGGCAATAAACGCAAGTTATCAGTGGCCATAGCAATGATTGGAGATCCTCCTCTCGTCATTTTAGATGAACCTTCAACGGGTATGGACCCTATTGCAAAGCGATTTATGTGGGATGTCATCTCACGTATATCAACTAGGCAAGGGAAAACAGCAGTTATCCTGACAACACATAGCATGAATGAAGCACAGGCCCTTTGTACACGCATTGGAATTATGGTTGGGGGGCGGCTCTGTTGTCTTGGAAGTCCTCAACATTTGAAAACACGCTTTGGCAACTATCTTGAACTTGAGGTGAAACCTGTGGATGTTAGTGTGGTAGAATTAGATAACTTGTGCAATACTCTACATGATATGTTTTTTGACTTTCCGAGCCATTCTAGAGGTATCTTGAGTGATCTGGAAATTTGTATTGGAGGATCAGAGGCTGGCTCCTCCACTCACATGTCAGAAACTAATTTGTCACATGAAATGATCATTGTTGCGGGGCGTAGACTAGGCAATGAGGAGTATGTGCAAAACCTAATTTCAAACAGCCCTTGCATCGATGGAGTTTTTAGTGAGCAATTATCAGAACAATTATTCCGTGATGGTGGCATTCCATTGAGGGTTTTTTGTGAGTGGTGGCTAGCAAAAGAGCATGTAGCAAGAATCAATTCTTTTGTTTTTTCATCATTTCCTGGTGCAACGTTTCAAGGGCGCAATGGCTACAGCCTTAGTTATCAGCTACCTTATCGAGAAGGGGCATCTCTTGCAGACATATTTGGTCATTTGGAAATGAACAGAGAAATAGCTGGTATTGCTGAATATAGCATTGGTCAGTCGACGTTGGAGACGATTTTCAATCATTTTGCCGCAAACCAGTAAGGAAGCTTAAGTTTCAACTTAGGCTTCTAATGGTGTAGTAGAAAACGTTAGTTATAACTTATGTGGCGTCTAGCTGCAAACATTTTCAAGATGAAGATAGAATATGTGATTTTGTAAAAAGTAGAGGTTAATTTGATTTTTGACAACTAAACAGGATAATGTGAGATATATGTAATATAGTGGCCCCTCAAATATTTATGGATAGTGAAGACCTGCATTAGACATAATCTGTACCTTTTATGCTTCTATTGCATTACCAGATTTGCAGCTCACTCATATCTTGCCGTTTGGCAGTGAAAAGCCTTTTGACAATAAAAAATTTGTAGCTTCTGGAATTTCTGTTAACCCAGATTCTATACCTCCACTTCTTGTATTACTACTCAAATTAGAGATCTTCAGGTAATGAAAAGGAAATCAGATCAGGAACACAGCAATTGGTCTTTCAATTTGTACACAATTAAAGATGTACATAAATTCTTCATTTACGTGAGGAGCTCCTGTACTCTATGTATGTATTTGAAGTATAATCTAGTCACGCACACATGCTATCTACAAGAATACAAAGGATAACCACTTGCATTGCCTTGTTAGCTACGGTGCAGTCTACTCAATTGTAGTCTTTTGTCATCGAGAAATTAGAAACGAGAAATTCTCTATGGAAGATTTTGTAAGTGAACTTATCTGTAG

Ace file of the UniGene sp_v3.0_unigene8318

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8SQA6_SELML	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	ABC transporter family, cholesterol/phospholipid flippase	-	-	1.894e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polyamine-transporting ATPase.	EC:3.6.3.31	-	1.991e-06	-

Source	Gene names
Sma3	ATH1; ATH11; ATH14; ATH16; ATH2; ATH3; ATH4; ATH6; ATH7; At2g41700; At3g47730; At3g47740; At3g47750; At3g47760; At3g47780; At3g47790; At5g61700; At5g61730; At5g61740; CHLREDRAFT_119311; CHLREDRAFT_121110; CHLREDRAFT_129367; GSVIVT00000113001; GSVIVT000001

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G41700.1	ABCA1, AtABCA1 ATP-binding cassette A1 chr2:17383239-17396110 REVERSE LENGTH=1882	60%
RefSeq	Arabidopsis thaliana	NP_850354.2	ABC transporter A family member 1 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002308937.1	ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA1

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 29 aas, your sequence is shorter than subject: 686 - 788

Fln protein: MGNVK*KQNTNRLLAGFLFLLIGSQLMYGISSVIFFQHHLQCFYFMFLV*SSLLAGIALDQLYSCCWDMGQQWQL*HIALHSFLLIILLPKMWCCWYIFSVALFLWSSHSLWVSSVQPNMQTHYLRTFSGYHQDSALLTDLHPLRCEGKV*SLDLERDL*IGM*LVHLYFIYFWRVLYISYLFLGLTSCLVHLSVGLQ*DLGVHGWWVTSAIYYGQRVLRSLSLFLLFESHASNFEDEDEDVTAERVRVLSGAAKDSIIYLQNLRKIYPSSGNQPEKVAVDSLSFAVQEGECFGFLGTNGAGKSTTLSMLCGEEHPTGGTAYIFGKDILAHPKAAHQHVGYCPQFDALLELLTVREHLELYARIKGVSKEILDQVVEGKLAEFDLWPQANKPSCSLSGGNKRKLSVAIAMIGDPPLVILDEPSTGMDPIAKRFMWDVISRISTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLCCLGSPQHLKTRFGNYLELEVKPVDVSVVELDNLCNTLHDMFFDFPSHSRGILSDLEICIGGSEAGSSTHMSETNLSHEMIIVAGRRLGNEEYVQNLISNSPCIDGVFSEQLSEQLFRDGGIPLRVFCEWWLAKEHVARINSFVFSSFPGATFQGRNGYSLSYQLPYREGASLADIFGHLEMNREIAGIAEYSIGQSTLETIFNHFAANQ*

Protein Length: 687

Fln nts: ATGGGGAACGTGAAGTAAAAGCAAAACACCAACAGATTATTAGCGGGGTTTCTGTTCTTGCTTATTGGATCTCAACTTATGTATGGGATTTCATCAGTTATCTTCTTCCAGCATCACTTGCAATGTTTCTATTTTATGTTTTTGGTCTAGAGCAGTTTATTGGCAGGGATAGCTTTGGACCAACTTTATTCATGTTGTTGGGATATGGGCCAGCAGTGGCAGCTTTAACATATTGCCTTACATTCCTTTTTACTGATTATTCTGTTGCCCAAAATGTGGTGTTGCTGGTACATTTTTTCAGTGGCCTTGTTCTTATGGTCATCTCATTCATTATGGGTCTCATCCGTGCAACCAAACATGCAAACTCATTACTTAAGAACTTTTTCAGGGTATCACCAGGATTCTGCCTTGCTGACGGACTTGCATCCCTTGCGTTGCGAAGGCAAGGTATGAAGCTTGGATCTGGAGAGGGACCTCTAGATTGGAATGTAACTGGTGCATCTGTATTTTATCTACTTTTGGAGAGTGTTATATATTTCATATTTGTTCTTGGGTTTGACCTCCTGCCTGGTCCATCTATCTGTTGGGCTTCAATAAGATCTTGGTGTACATGGCTGGTGGGTAACAAGCGCTATTTACTATGGCCAAAGGGTCTTACGGAGCCTTTCATTGTTTCTTCTGTTTGAATCACATGCTTCAAATTTTGAGGATGAGGATGAAGATGTAACGGCAGAGAGGGTGAGAGTTCTATCTGGTGCAGCGAAAGACAGCATAATTTACCTACAGAATCTCAGAAAGATATATCCATCAAGTGGAAATCAGCCAGAGAAGGTTGCAGTTGATTCCTTGAGCTTTGCAGTTCAAGAAGGAGAGTGTTTTGGATTTCTCGGCACAAATGGTGCTGGAAAGAGTACAACACTGTCAATGCTATGTGGCGAAGAGCATCCTACGGGAGGAACTGCATATATTTTTGGCAAGGATATTCTTGCACATCCAAAGGCAGCACATCAGCATGTAGGTTATTGTCCTCAGTTTGATGCCCTTCTAGAGTTACTTACTGTTCGAGAACATCTCGAGCTCTATGCACGGATCAAGGGAGTTTCAAAGGAAATATTAGATCAAGTTGTCGAAGGAAAGCTCGCAGAATTTGATTTATGGCCACAAGCAAACAAACCTTCCTGTTCTCTAAGTGGTGGCAATAAACGCAAGTTATCAGTGGCCATAGCAATGATTGGAGATCCTCCTCTCGTCATTTTAGATGAACCTTCAACGGGTATGGACCCTATTGCAAAGCGATTTATGTGGGATGTCATCTCACGTATATCAACTAGGCAAGGGAAAACAGCAGTTATCCTGACAACACATAGCATGAATGAAGCACAGGCCCTTTGTACACGCATTGGAATTATGGTTGGGGGGCGGCTCTGTTGTCTTGGAAGTCCTCAACATTTGAAAACACGCTTTGGCAACTATCTTGAACTTGAGGTGAAACCTGTGGATGTTAGTGTGGTAGAATTAGATAACTTGTGCAATACTCTACATGATATGTTTTTTGACTTTCCGAGCCATTCTAGAGGTATCTTGAGTGATCTGGAAATTTGTATTGGAGGATCAGAGGCTGGCTCCTCCACTCACATGTCAGAAACTAATTTGTCACATGAAATGATCATTGTTGCGGGGCGTAGACTAGGCAATGAGGAGTATGTGCAAAACCTAATTTCAAACAGCCCTTGCATCGATGGAGTTTTTAGTGAGCAATTATCAGAACAATTATTCCGTGATGGTGGCATTCCATTGAGGGTTTTTTGTGAGTGGTGGCTAGCAAAAGAGCATGTAGCAAGAATCAATTCTTTTGTTTTTTCATCATTTCCTGGTGCAACGTTTCAAGGGCGCAATGGCTACAGCCTTAGTTATCAGCTACCTTATCGAGAAGGGGCATCTCTTGCAGACATATTTGGTCATTTGGAAATGAACAGAGAAATAGCTGGTATTGCTGAATATAGCATTGGTCAGTCGACGTTGGAGACGATTTTCAATCATTTTGCCGCAAACCAGTAA___GGAAGCTTAAGTTTCAACTTAGGCTTCTAATGGTGTAGTAGAAAACGTTAGTTATAACTTATGTGGCGTCTAGCTGCAAACATTTTCAAGATGAAGATAGAATATGTGATTTTGTAAAAAGTAGAGGTTAATTTGATTTTTGACAACTAAACAGGATAATGTGAGATATATGTAATATAGTGGCCCCTCAAATATTTATGGATAGTGAAGACCTGCATTAGACATAATCTGTACCTTTTATGCTTCTATTGCATTACCAGATTTGCAGCTCACTCATATCTTGCCGTTTGGCAGTGAAAAGCCTTTTGACAATAAAAAATTTGTAGCTTCTGGAATTTCTGTTAACCCAGATTCTATACCTCCACTTCTTGTATTACTACTCAAATTAGAGATCTTCAGGTAATGAAAAGGAAATCAGATCAGGAACACAGCAATTGGTCTTTCAATTTGTACACAATTAAAGATGTACATAAATTCTTCATTTACGTGAGGAGCTCCTGTACTCTATGTATGTATTTGAAGTATAATCTAGTCACGCACACATGCTATCTACAAGAATACAAAGGATAACCACTTGCATTGCCTTGTTAGCTACGGTGCAGTCTACTCAATTGTAGTCTTTTGTCATCGAGAAATTAGAAACGAGAAATTCTCTATGGAAGATTTTGTAAGTGAACTTATCTGTAG

Fln Alignment:

Contig8318___SNFEDEDEDVTAERVRVLSGAAKDSI-----IYLQNLRKIYPSSGNQ---------PEKVAVDSLSFAVQEGECFGFLGTNGAGKSTTLSMLCGEEHPTGGTAYIFGKDILAHPKAAHQH--VGYCPQFDALLELLTVREHLELYARIKGVSKEILDQVVEGKLAEFDLWPQANKPSCSLSGGNKRKLSVAIAMIGDPPLVILDEPSTGMDPIAKRFMWDVISRISTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLCCLGSPQHLKTRFG
C0PRA1______________SESSPDDEDVATEESLVRQQVTENTLGSNVAVQVRGLLKTFPGIRNMVGCCKCRKTAPHHAVKGLWINIEKDKLFCLLGPNGAGKTTTINCLTGITPITAGDALIYGHSIKSTSGMSNIRSVMGVCPQFDILWDALSAQEHLYLFAGIKGMPRPAIKSDAENLLSQVKLSEAAHIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPVTRRYVWDIIE--DAKKGR-AIVLTTHSMEEADILSDRIAIMARGKLRCIGTSVRLKSRFG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2677	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain