SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8315

Length: 2162 nt

UniGene Fasta

>sp_v3.0_unigene8315
TCCTTCCTCGAAGAAAAACAACCCATTTATCCGGAGTCGCAACCAGCCTGACCCACATTCTGACTCCAGTTTTTTCATTCCATTTAACCGGAGAACTGCTAAAAAGGGCTCTGTCTCCGAGTCGAATCTGATCATTACAGTGATTTGACAAAGTCTTGTTCCCAAATTTCACAGCCTGGAGCAATTTGTGCATGTGGGTAGTCCTCTGTAGGACGAAGCTGCTCAGAATTCCAACGACCACAGAAAAATTGTGGGCGTATCTCTATTAAAAGAACATGAGGGCTTTGATAAGAGCAGCCTATCGTGCAAGATCAATATCTCGGTGTGCACAAGTGGGTGGATCTGATGGGTGCATAAGCAGGGGCAGAAGGTTGGTTGTGAAATCGCAGTCATCCTCGGTATTTTTGACATCTTGCAGTCCTCTATGGGAGAAGGAAATTAGCATAGGCCTACAACAGGGTATAACTTCAAGGACCTTGCTGTCATCTGCAGCCAAAGATTCAAGCAAAGATGTGGAGAGAGGGGGTCCTCTAATAGAGTATGAAAGGCGGATAGCAGCAGGAGAACTCATGGCAGGCGACACATGTCAGGAAGAGACCCTCAGAGCTCTCCAGATATTATATGATGAGCTGGTAGATGCAGCTGAATCTTGTGGATTGGAAAGATCCGCATCTTCTAATAAATCCAACAGCTGGTTCTCATTCATAATGCCACAAGCTTCTTTGTCACCTGTTCGTGGCTTGTACCTATATGGTGGGGTAGGCACAGGCAAAACAATGTTAATGGACATGTTCTATGAGCAACTGCCTGAATCTTGGAGGAAGAAGAGAATTCACTTCCATGATTTTATGTTGGATGTACATAGCCTTCTTCAAAAGCAAAAAGGTCTAAGTGATCCTTTGGATGCTGTTGCTAATGATATTTCAAGTGAAGCAATTCTGTTGTGCATTGATGAGTTCATGGTAACAGATGTGGCAGATGCATTGATCCTGAATCGGATGTTTAGACATTTATTTAACAAAGGAATTATCTTGGTTTCCACTTCCAACAGGGCTCCTGATAATTTATATGAAGGTGGTCTTCAGAGGAATCTATTCTTGCCTTTCATCTCACTTTTGAAGGAGCGATGTGTTGTTCATGAGATTGGATCTTCCACTGACTATCGAAAGCTCACTTCAGCTCAGAAAGGATTGTATTTTTGTGGCAAAGATTCTTCTCGTTTGCTCAAAGAAAAATTTCAAGAATTGATAAGTGGATATATGGCCACTCCAACAACTGTTGAAGTTGTCATGGGACGGACATTACAGATTCCTTTTGGAGCCAATGGTTGTGCTTATTTCCAGTTTGAAGATCTCTGTGAGAAACCTTTGGGTGCAGCAGATTATTTTGGGCTTTTCAAGCATTTCCATACTCTTGCACTGGAAGGCATACCTACTTTTGGAGCACACAACAGGACATCAGCATATCGTTTTGTCACATTAGTTGATGTAATGTATGAGAACAAGGCGAAGCTACTTTGTTCAGCAGAGGCATCACCAGTGGAGCTGCTTGAACGGATTGTCACTATTGATGAAGCGAAAAAAACTGCACCTAGAACATCATCGCGTTCACGAAAGAATGATGATGCAGATCTCTGTGTTGACAATGAATTGGGGTTTGCTAAAGATCGGACCATTAGCAGATTGATGGAGATGAATAGCAAAGAATTTTTAGAAGAACATACTGCGCGTTTGGCATTAAACAATGACCATAAAATTTCTTCCAGCAGCTCTGAAGGGTAATTCAATCATTGCCATCAGATATAACTTATATTCAGAGAAAATTATTCAAGTTTGCCGTCTCCGCCAGTATCGGTGTGACTGCAACTTGATCAAATTTTCAAGAATTGCTCAGCCAAATTGCAATTCTAGACTTTCTCAAGAACTGTAAATGGTAGATTGCGCAAGAGCTGTAAATGGTTTTGTTTTTGAATGTATAATAAGGCTATTTTCATTTTGTAACCTTACTTGGGATTTATAGACACTTGTAAAGCACCATCGTATATGACTTGCAATGTACTCATTGTCACGGAATCTTGAAAAATCCAGGCTAAAAGTTCAGGATGAGCTTTAATATAGCTTTCATAATTCAGCTTTCATAATTCAGAAATATGGCTTCTCAAT

Ace file of the UniGene sp_v3.0_unigene8315

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AFG1 family ATPase [Parvibaculum lavamentivorans DS-1] gb\|ABS63068.1\| AFG1-family ATPase [Parvibaculum lavamentivorans DS-1]	-	-	0.0	40%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	72%

Source	Gene names
Sma3	AT4g28070; AT4g30490; At4g28070; At4g30490; CHLREDRAFT_116326; GSVIVT00017116001; OSTLU_3538; Os08g0265500; OsI_28512; OsI_28515; OsJ_26663; Ot01g00630; PHATRDRAFT_2542; PHYPADRAFT_112100; PHYPADRAFT_114973; POPTRDRAFT_1106960; RCOM_0048410; T13J8.180; VI

Source	GOs	Term	Type	e value	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	ATPase, AFG1-like	IPR005654	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G28070.2	AFG1-like ATPase family protein chr4:13946009-13948462 FORWARD LENGTH=473	69%
RefSeq	Arabidopsis thaliana	NP_001031737.1	AFG1-like protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002325105.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9PGB5

Fln msg:

Fln protein: MRALIRAAYRARSISRCAQVGGSDGCISRGRRLVVKSQSSSVFLTSCSPLWEKEISIGLQQGITSRTLLSSAAKDSSKDVERGGPLIEYERRIAAGELMAGDTCQEETLRALQILYDELVDAAESCGLERSASSNKSNSWFSFIMPQASLSPVRGLYLYGGVGTGKTMLMDMFYEQLPESWRKKRIHFHDFMLDVHSLLQKQKGLSDPLDAVANDISSEAILLCIDEFMVTDVADALILNRMFRHLFNKGIILVSTSNRAPDNLYEGGLQRNLFLPFISLLKERCVVHEIGSSTDYRKLTSAQKGLYFCGKDSSRLLKEKFQELISGYMATPTTVEVVMGRTLQIPFGANGCAYFQFEDLCEKPLGAADYFGLFKHFHTLALEGIPTFGAHNRTSAYRFVTLVDVMYENKAKLLCSAEASPVELLERIVTIDEAKKTAPRTSSRSRKNDDADLCVDNELGFAKDRTISRLMEMNSKEFLEEHTARLALNNDHKISSSSSEG*

Protein Length: 503

Fln nts: TCCTTCCTCGAAGAAAAACAACCCATTTATCCGGAGTCGCAACCAGCCTGACCCACATTCTGACTCCAGTTTTTTCATTCCATTTAACCGGAGAACTGCTAAAAAGGGCTCTGTCTCCGAGTCGAATCTGATCATTACAGTGATTTGACAAAGTCTTGTTCCCAAATTTCACAGCCTGGAGCAATTTGTGCATGTGGGTAGTCCTCTGTAGGACGAAGCTGCTCAGAATTCCAACGACCACAGAAAAATTGTGGGCGTATCTCTATTAAAAGAAC_-_ATGAGGGCTTTGATAAGAGCAGCCTATCGTGCAAGATCAATATCTCGGTGTGCACAAGTGGGTGGATCTGATGGGTGCATAAGCAGGGGCAGAAGGTTGGTTGTGAAATCGCAGTCATCCTCGGTATTTTTGACATCTTGCAGTCCTCTATGGGAGAAGGAAATTAGCATAGGCCTACAACAGGGTATAACTTCAAGGACCTTGCTGTCATCTGCAGCCAAAGATTCAAGCAAAGATGTGGAGAGAGGGGGTCCTCTAATAGAGTATGAAAGGCGGATAGCAGCAGGAGAACTCATGGCAGGCGACACATGTCAGGAAGAGACCCTCAGAGCTCTCCAGATATTATATGATGAGCTGGTAGATGCAGCTGAATCTTGTGGATTGGAAAGATCCGCATCTTCTAATAAATCCAACAGCTGGTTCTCATTCATAATGCCACAAGCTTCTTTGTCACCTGTTCGTGGCTTGTACCTATATGGTGGGGTAGGCACAGGCAAAACAATGTTAATGGACATGTTCTATGAGCAACTGCCTGAATCTTGGAGGAAGAAGAGAATTCACTTCCATGATTTTATGTTGGATGTACATAGCCTTCTTCAAAAGCAAAAAGGTCTAAGTGATCCTTTGGATGCTGTTGCTAATGATATTTCAAGTGAAGCAATTCTGTTGTGCATTGATGAGTTCATGGTAACAGATGTGGCAGATGCATTGATCCTGAATCGGATGTTTAGACATTTATTTAACAAAGGAATTATCTTGGTTTCCACTTCCAACAGGGCTCCTGATAATTTATATGAAGGTGGTCTTCAGAGGAATCTATTCTTGCCTTTCATCTCACTTTTGAAGGAGCGATGTGTTGTTCATGAGATTGGATCTTCCACTGACTATCGAAAGCTCACTTCAGCTCAGAAAGGATTGTATTTTTGTGGCAAAGATTCTTCTCGTTTGCTCAAAGAAAAATTTCAAGAATTGATAAGTGGATATATGGCCACTCCAACAACTGTTGAAGTTGTCATGGGACGGACATTACAGATTCCTTTTGGAGCCAATGGTTGTGCTTATTTCCAGTTTGAAGATCTCTGTGAGAAACCTTTGGGTGCAGCAGATTATTTTGGGCTTTTCAAGCATTTCCATACTCTTGCACTGGAAGGCATACCTACTTTTGGAGCACACAACAGGACATCAGCATATCGTTTTGTCACATTAGTTGATGTAATGTATGAGAACAAGGCGAAGCTACTTTGTTCAGCAGAGGCATCACCAGTGGAGCTGCTTGAACGGATTGTCACTATTGATGAAGCGAAAAAAACTGCACCTAGAACATCATCGCGTTCACGAAAGAATGATGATGCAGATCTCTGTGTTGACAATGAATTGGGGTTTGCTAAAGATCGGACCATTAGCAGATTGATGGAGATGAATAGCAAAGAATTTTTAGAAGAACATACTGCGCGTTTGGCATTAAACAATGACCATAAAATTTCTTCCAGCAGCTCTGAAGGGTAA___TTCAATCATTGCCATCAGATATAACTTATATTCAGAGAAAATTATTCAAGTTTGCCGTCTCCGCCAGTATCGGTGTGACTGCAACTTGATCAAATTTTCAAGAATTGCTCAGCCAAATTGCAATTCTAGACTTTCTCAAGAACTGTAAATGGTAGATTGCGCAAGAGCTGTAAATGGTTTTGTTTTTGAATGTATAATAAGGCTATTTTCATTTTGTAACCTTACTTGGGATTTATAGACACTTGTAAAGCACCATCGTATATGACTTGCAATGTACTCATTGTCACGGAATCTTGAAAAATCCAGGCTAAAAGTTCAGGATGAGCTTTAATATAGCTTTCATAATTCAGCTTTCATAATTCAGAAATATGGCTTCTCAAT

Fln Alignment:

Contig8315___ITSRTLLSSAAKDSSKDVERGGPLIEYERRIAAGELMAGDTCQEETLRALQILYDELVDAAESCGLERXXXXXXXXXXXXX---IMPQASLSPVRGLYLYGGVGTGKTMLMDMFYEQLPESWRKKRIHFHDFMLDVHSLLQKQKGLSDPLDAVANDISSEAILLCIDEFMVTDVADALILNRMFRHLFNKGIILVSTSNRAPDNLYEGGLQRNLFLPFISLLKERCVVHEIGSSTDYRKLTSAQKGLYFCGKDSSRLLKEKFQELISGYMATPTTVEVVMGRTLQIPFGANGCAYFQFEDLCEKPLGAADYFGLFKHFHTLALEGIPTFGAHNRTSAYRFVTLVDVMYENKAKLLCSAEASPVELLERIVTIDEAKKTAPRTSSRSRKNDDADLCVDNELGFAKDRTISRLMEMNSKEFLEEHTARLA
A9PGB5______________IASRTLTTDAARVSNGDVNGGGPLVEYERRIAAGELVDGDSCQVGTLRELQRLYDELVESADACKLDRYTASDKSGRSRWLWSRLMPQSSYSPIKGLYLYGGVGTGKTMLMDLFFNQLPVNWRKKRIHFHDFMLNVHSRLQKHKGVADPLEVVAGEISDEAILLCLDEFMVTDVADALILNRLFRQLFNNGVILVVTSNRAPDNLYERGLQRDLFLPFIATLKERCVAHEIGSAVDYRKMTSAQHGFYFVGKESSSLLKQKFQQLIGEEKACPQEVEVVMGRTLQVPLGANGCAYFPFEELCDKPLGAADYFGLFNNFHTLALEGVPIFGLHNRTAAYRFVTLVDVIYENRAILLCTAEGSPLELFDRIVTIADAQQMAPRTSTRSRKNDDSDLCVDNELGFTKDRTISRLTEMNSKEYLEQHAAMLA

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
500	20			80	0.995493
504	80			20	0.995493
505			80	20	0.995493
523	20		80		0.995493
524	20		80		0.995493
525			80	20	0.995493
1062	60	40			1.0
1148	83		16		0.994512
1178	83		16		0.994512
1219	25		75		0.996473
1263	20		80		0.995493
1391	11		88		0.923564
1393	11			88	0.923564
1482	20		80		0.995493
1643		60	40		1.0
1644	60		40		1.0
1645	60		40		1.0
1718	88		11		0.999952
1754	50	50			1.0
1792	16		83		1.0
1798	55		44		1.0
1882	90			10	0.90298
2128	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain