SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8279

Length: 2746 nt

UniGene Fasta

>sp_v3.0_unigene8279
ATGGGGAATCCATCTCTCAAATTCAATCCTTCGTTGCCTTTGCTGTCCTGTAATCTTCACATATTTTTTTCAAGGGTTTTGTGTGTTTCTACGCGCAGTGGTCGTCATGCCTTACGTTCCACCTCACCAAAGAAATGGAGCAGCAGCAGCTGCTGTGCCATCTTCTTCCGCTTTCGGTAACGCTGGTAGAGCTGCTGATCTAGGCGCCCACAGGCCAGCGGATGGATATTACAATTACAGTGCAGGGAAGAGCTTCGGAAATAATAAAGATTACGGTACTAGCTTTGGAAACTCGAATAGGCGAGGTTCGAATCCCCGGGAGGACGGCACTTGCAACGGCGCCGGTTTCCAGCACAGGCGGCCCGATGCCCGCGGCTCCGCTATTCCCGAACCCGTCTTCTCCCAATGGCAGCCTTCTGAGCGCATTCGCCGTCTTCAAAACGATCAGATTGAAGAGGTTATGGCTAGGCTGAATGTTGATGTCCACATAACCCCAGGCACCCCTCCTGCCCCTTCACCTGTGGAGTCATTTGAGGATATGTGTTTAAATCCAAGCATCATGAAAGATATCATTTTCCATGATTACTCTACCCCAACTCCTATTCAAGCTCAAGCCATGCCAGTTGCTCTTAGTGGAAGAGACCTCCTTGGTTGCGCAGAGACAGGGAGTGGAAAAACTGCAGCATTCTCTATTCCCATGATTCAGCACTGTTTGGCGCAACCACCTATTCGGCATGGGGATGGACCTTTGGGTTTAGTCCTGGCACCAACTCGAGAGCTTGCTCAGCAGATTGAAAAAGAGGTTAAGGCTTTTAGCAGATCATTAGAGTCATTCAGGACTGCCATTGTTGTTGGAGGAACAAACATTGCTGAGCAGAGATCAGAGCTGAGAGCTGGAGTAGAAATTGTTGTTGCCACACCTGGAAGATTTATAGATCATCTACAACAAGGAAACAGCTCTCTTTCCAGGATCTCATTTGTTGTATTGGACGAGGCCGATAGAATGCTAGATATGGGTTTTGAACCCCAGATAAGAGAGGTCATGCGAAATCTTCCTAAAAGGCACCAGACATTATTATTCAGTGCCACAATGCCAGAGGAGATTGAAGCACTTGCTCAGGAATATCTGAATAAGCCAGTGCAAGTAAAGGTGGGAAAAGTAAGCAGTCCAACGGCAAATGTTTCTCAGGTCCTAGAGAAGGTTACTGAAGACGAAAAGACTGATCGTCTCTTAGCTTTACTTGTGGAGGAATCATCCCAAGCAGAGAAGTCTGGACAACCTCTTCCTCTGACCATTGTTTTTGTTGAACGAAAGACAAGGTGTGACGAAGTTTCAGATGCATTAGTTGCGCAAGGTCTCCATGCAGTTGCACTACATGGTGGTCGAAGTCAAGTGGAAAGAGAAGCTGCTTTACGTGAGTTTCGTAGTGGCTCCACTAATATTCTGGTCGCTACAGACGTGGCCTCTCGAGGTTTGGATGTGACTGGTGTTTCCCATGTTGTTAACCTTGATCTCCCCAAGGCTATGGAGGATTATGTGCATCGTATTGGAAGAACGGGCCGTGCAGGGACCAGTGGCCGAGCAACTTCCTTTTACACAGAGCGGGATATGTTCCTGGTTGCTCATATTCGGAAGGCAATAGCAGATGCAGAAGCTGGAAACACCATGGCATTTGCAACTGGAAAGGCTGCAAGGAGAAAGGAGAGGGAACAGGCAGCAGCATTTCGGGAAGGAAGACTAGCTCCTACTGGAACAGGTGTCCTTGGATCCACCACCATTCGTGTTGAAGACAAATATAAGTACATGTTGGCACAGGCAAATCTCAAGCAAGAAGGTGCTGCAGATAATGCCTGGGATGATTGATTTCTGCTTTTTATATTCTTTAATCACTTTGGAGGTACGGAGGAAATATCGAAGGACTGCATTCTTGACTTCTCTTTCGACAGGAGGTGGATGAAGATTTAAAGTGCTTGCCATGAGCATTCAGTGTGTGGGTGCCCTGGTTTTGTGTCAACTTGATGCGCTGTGAATTCAGCATACCATATATCCATGGGAAAACGTGTGGAGGTGGCATTGTACAAATTGTGTACACGGCAGTACTTATGATGTGGTTCTATCACAAGGGAAGCATTGTATCTGCAACTGACCATTTAAATTACCGATCAAGAAAGATTAGTTGCAGGCCTATTAACAAAAACTCACACTTTATTTACTGGATAGCTCTGACCAACAGATTCAAGTTTTCGTTTTTCTAAAGCAATATTTAATCTTCCTCGCTACAGTAATTGGTTGTCAAATATAGCTTATGAATGGTACAGATTGGCAAGCTTTTGTGCTAAGTTACTTGTTGACACTCAGTATCGTAAGTGCACAGTCTATTCTGTATAGTGAGTACGGAGTATAGTGAAATGCTGTAGGTCTGTGACATGTTGGTCCCAATTGTGATAATAGTCTTTTATTGTGCGCAAAGTGAGTTAAATTTTGTTTGACATGTTTTTGTTGATTCTCCGAGGAATGGCCATGTGCTAATGTTAAACGTTGACAAACTTCCTTCTCAATCCTTCGAAGGGGTTACACTTATTTCATCTATGGGATTCTAGCTGTAGACATAAGAGATGGGCATACGATTTGACTGTTAGCATTGTTCAGAGATGAAAAAGAATTAACGAATCGATCAATTTCTTAGGAGGTTTGTCAGAGAGATAAATGATAGTAAATTGATAATCGATCAGTTTCCAGATTCGC

Ace file of the UniGene sp_v3.0_unigene8279

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD box protein P68 [Pisum sativum]	-	-	0.0	63%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	73%
Sma3	Dead box ATP-dependent RNA helicase, putative	-	-	2.8e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	1.665e-33	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	1.665e-33	%
Sma3	Lipopolysaccharide biosynthesis	00540	1.665e-33	%
Sma3	Folate biosynthesis	00790	1.665e-33	%
Sma3	Metabolic pathways	01100	1.665e-33	%

Source	Gene names
Sma3	At1g31970; At2g33730; At2g47330; At3g06480; At3g09620; At3g22330; At4g33370; At5g51280; B1156H12.12-1; B1156H12.12-2; CHLREDRAFT_104111; CHLREDRAFT_111269; CHLREDRAFT_118630; CHLREDRAFT_129561; CHLREDRAFT_131102; CHLREDRAFT_136376; CHLREDRAFT_136620; CHLR

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO:0000184	Biological Process	-
Sma3	rRNA processing	GO:0006364	Biological Process	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	ADC synthase	IPR005801	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	GUCT	IPR012562	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Chorismate binding, C-terminal	IPR015890	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002319430.1	predicted protein [Populus trichocarpa]	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SU89

Fln msg:

Fln protein: MPYVPPHQRNGAAAAAVPSSSAFGNAGRAADLGAHRPADGYYNYSAGKSFGNNKDYGTSFGNSNRRGSNPREDGTCNGAGFQHRRPDARGSAIPEPVFSQWQPSERIRRLQNDQIEEVMARLNVDVHITPGTPPAPSPVESFEDMCLNPSIMKDIIFHDYSTPTPIQAQAMPVALSGRDLLGCAETGSGKTAAFSIPMIQHCLAQPPIRHGDGPLGLVLAPTRELAQQIEKEVKAFSRSLESFRTAIVVGGTNIAEQRSELRAGVEIVVATPGRFIDHLQQGNSSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPKRHQTLLFSATMPEEIEALAQEYLNKPVQVKVGKVSSPTANVSQVLEKVTEDEKTDRLLALLVEESSQAEKSGQPLPLTIVFVERKTRCDEVSDALVAQGLHAVALHGGRSQVEREAALREFRSGSTNILVATDVASRGLDVTGVSHVVNLDLPKAMEDYVHRIGRTGRAGTSGRATSFYTERDMFLVAHIRKAIADAEAGNTMAFATGKAARRKEREQAAAFREGRLAPTGTGVLGSTTIRVEDKYKYMLAQANLKQEGAADNAWDD*

Protein Length: 587

Fln nts: ATGGGGAATCCATCTCTCAAATTCAATCCTTCGTTGCCTTTGCTGTCCTGTAATCTTCACATATTTTTTTCAAGGGTTTTGTGTGTTTCTACGCGCAGTGGTCGTC_-_ATGCCTTACGTTCCACCTCACCAAAGAAATGGAGCAGCAGCAGCTGCTGTGCCATCTTCTTCCGCTTTCGGTAACGCTGGTAGAGCTGCTGATCTAGGCGCCCACAGGCCAGCGGATGGATATTACAATTACAGTGCAGGGAAGAGCTTCGGAAATAATAAAGATTACGGTACTAGCTTTGGAAACTCGAATAGGCGAGGTTCGAATCCCCGGGAGGACGGCACTTGCAACGGCGCCGGTTTCCAGCACAGGCGGCCCGATGCCCGCGGCTCCGCTATTCCCGAACCCGTCTTCTCCCAATGGCAGCCTTCTGAGCGCATTCGCCGTCTTCAAAACGATCAGATTGAAGAGGTTATGGCTAGGCTGAATGTTGATGTCCACATAACCCCAGGCACCCCTCCTGCCCCTTCACCTGTGGAGTCATTTGAGGATATGTGTTTAAATCCAAGCATCATGAAAGATATCATTTTCCATGATTACTCTACCCCAACTCCTATTCAAGCTCAAGCCATGCCAGTTGCTCTTAGTGGAAGAGACCTCCTTGGTTGCGCAGAGACAGGGAGTGGAAAAACTGCAGCATTCTCTATTCCCATGATTCAGCACTGTTTGGCGCAACCACCTATTCGGCATGGGGATGGACCTTTGGGTTTAGTCCTGGCACCAACTCGAGAGCTTGCTCAGCAGATTGAAAAAGAGGTTAAGGCTTTTAGCAGATCATTAGAGTCATTCAGGACTGCCATTGTTGTTGGAGGAACAAACATTGCTGAGCAGAGATCAGAGCTGAGAGCTGGAGTAGAAATTGTTGTTGCCACACCTGGAAGATTTATAGATCATCTACAACAAGGAAACAGCTCTCTTTCCAGGATCTCATTTGTTGTATTGGACGAGGCCGATAGAATGCTAGATATGGGTTTTGAACCCCAGATAAGAGAGGTCATGCGAAATCTTCCTAAAAGGCACCAGACATTATTATTCAGTGCCACAATGCCAGAGGAGATTGAAGCACTTGCTCAGGAATATCTGAATAAGCCAGTGCAAGTAAAGGTGGGAAAAGTAAGCAGTCCAACGGCAAATGTTTCTCAGGTCCTAGAGAAGGTTACTGAAGACGAAAAGACTGATCGTCTCTTAGCTTTACTTGTGGAGGAATCATCCCAAGCAGAGAAGTCTGGACAACCTCTTCCTCTGACCATTGTTTTTGTTGAACGAAAGACAAGGTGTGACGAAGTTTCAGATGCATTAGTTGCGCAAGGTCTCCATGCAGTTGCACTACATGGTGGTCGAAGTCAAGTGGAAAGAGAAGCTGCTTTACGTGAGTTTCGTAGTGGCTCCACTAATATTCTGGTCGCTACAGACGTGGCCTCTCGAGGTTTGGATGTGACTGGTGTTTCCCATGTTGTTAACCTTGATCTCCCCAAGGCTATGGAGGATTATGTGCATCGTATTGGAAGAACGGGCCGTGCAGGGACCAGTGGCCGAGCAACTTCCTTTTACACAGAGCGGGATATGTTCCTGGTTGCTCATATTCGGAAGGCAATAGCAGATGCAGAAGCTGGAAACACCATGGCATTTGCAACTGGAAAGGCTGCAAGGAGAAAGGAGAGGGAACAGGCAGCAGCATTTCGGGAAGGAAGACTAGCTCCTACTGGAACAGGTGTCCTTGGATCCACCACCATTCGTGTTGAAGACAAATATAAGTACATGTTGGCACAGGCAAATCTCAAGCAAGAAGGTGCTGCAGATAATGCCTGGGATGATTGA___TTTCTGCTTTTTATATTCTTTAATCACTTTGGAGGTACGGAGGAAATATCGAAGGACTGCATTCTTGACTTCTCTTTCGACAGGAGGTGGATGAAGATTTAAAGTGCTTGCCATGAGCATTCAGTGTGTGGGTGCCCTGGTTTTGTGTCAACTTGATGCGCTGTGAATTCAGCATACCATATATCCATGGGAAAACGTGTGGAGGTGGCATTGTACAAATTGTGTACACGGCAGTACTTATGATGTGGTTCTATCACAAGGGAAGCATTGTATCTGCAACTGACCATTTAAATTACCGATCAAGAAAGATTAGTTGCAGGCCTATTAACAAAAACTCACACTTTATTTACTGGATAGCTCTGACCAACAGATTCAAGTTTTCGTTTTTCTAAAGCAATATTTAATCTTCCTCGCTACAGTAATTGGTTGTCAAATATAGCTTATGAATGGTACAGATTGGCAAGCTTTTGTGCTAAGTTACTTGTTGACACTCAGTATCGTAAGTGCACAGTCTATTCTGTATAGTGAGTACGGAGTATAGTGAAATGCTGTAGGTCTGTGACATGTTGGTCCCAATTGTGATAATAGTCTTTTATTGTGCGCAAAGTGAGTTAAATTTTGTTTGACATGTTTTTGTTGATTCTCCGAGGAATGGCCATGTGCTAATGTTAAACGTTGACAAACTTCCTTCTCAATCCTTCGAAGGGGTTACACTTATTTCATCTATGGGATTCTAGCTGTAGACATAAGAGATGGGCATACGATTTGACTGTTAGCATTGTTCAGAGATGAAAAAGAATTAACGAATCGATCAATTTCTTAGGAGGTTTGTCAGAGAGATAAATGATAGTAAATTGATAATCGATCAGTTTCCAGATTCGC

Fln Alignment:

Contig8279___MPYVPPHQRNGXXXXXXXXXXXFGNAGRAADLGAHRPADGYYNYSAGK-------SFGNNKDYGTSFGNSNRRGSNPREDGTCNGAGFQHRRPDARGSAIPEPVFSQWQPSERIRRLQNDQIEEVMARLNVDVHITPGTPPAPSPVESFEDMCLNPSIMKDIIFHDYSTPTPIQAQAMPVALSGRDLLGCAETGSGKTAAFSIPMIQHCLAQPPIRHGDGPLGLVLAPTRELAQQIEKEVKAFSRSLESFRTAIVVGGTNIAEQRSELRAGVEIVVATPGRFIDHLQQGNSSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPKRHQTLLFSATMPEEIEALAQEYLNKPVQVKVGKVSSPTANVSQVLEKVTEDEKTDRLLALLVEESSQAEKSGQPLPLTIVFVERKTRCDEVSDALVAQGLHAVALHGGRSQVEREAALREFRSGSTNILVATDVASRGLDVTGVSHVVNLDLPKAMEDYVHRIXXXXXXXXXXXXXXFYTERDMFLVAHIRKAIADAEAGNTMAFATGKXXXXXXXXXXXXXXXGRLAPTGTGVLGSTTIRVEDKYKYMLAQA--NLKQEGAADNAWDD
A9SU89______________MPYVPPHLRAGAASAGAAPAS--GGAARR-DGGGRDSYGGSFGASAGARRSSSEVSFGNG---GSSYGNGYGQGSRESSGGSKEGSG------GVRGAGHPEVVWATWQPSERVQKLQPEQIAEVRARLNVDVEIATGSEPAPAPIESFEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFCRSAEGFRTAIVVGGTNIYEQRSELRAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQTLLFSATMPEEIEALAQEYLDNPIRVKVGRVSSPTANVTQNLEKITEKEKIESLLALLVDEHSQSLDTNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRKGTTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFYTERDMFLVAQIRRAITEAESGNAMAFATGKAARRKEREQAAAFREGRVAPLGVAQIGATTVRVDDKYKHMLSAAADPKKGEGAADDAWED

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
560		75	25		0.996473
561	75		25		0.996473
724		80		20	0.995493
863	80		20		0.995493
864	80		20		0.995493
865	80		20		0.995493
1016	33		66		0.997452
1017		33	66		0.997452
1018	33		66		0.997452
1098		20	80		0.995493
1100			80	20	0.995493
1101			80	20	0.995493
1149	80		20		0.995493
1150	80		20		0.995493
1593		14		85	0.993533
1594	14			85	0.993533
2094		88		11	0.923564
2139		90	10		0.90298
2140			10	90	0.90298
2151	90		10		0.90298
2154			10	90	0.90298
2156	90	10			0.90298
2157	90	10			0.90298
2160	90		10		0.90298
2161		90	10		0.90298
2163			90	10	0.90298
2164	90		10		0.90298
2168	90	10			0.90298
2169			90	10	0.90298
2170	90	10			0.90298
2250			12	87	0.992554
2252			12	87	0.992554
2253	12			87	0.992554
2255		14		85	0.993533
2256	85			14	0.993533
2257	85			14	0.993533
2258	85		14		0.993533
2261	85			14	0.993533
2262	85		14		0.993533
2264	77	11	11		0.968132
2265	11			88	0.923564
2266		22		77	0.999999
2267			11	88	0.923564
2268	77	11	11		0.968132
2270		11		88	0.923564
2275		88		11	0.923564
2278	11		88		0.923564
2466		87	12		0.992554
2476	14		85		0.993533
2545		83		16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
139	150	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain