SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8275

Length: 1447 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8275

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox transcription factor KN4 n=1 Tax=Picea mariana RepID=Q5SC62_PICMA	-	-	0.0	84%
FL-Next	tr=Homeobox transcription factor KN4; Picea mariana (Black spruce) (Abies mariana).	-	-	0.0	96%
Sma3	Homeobox protein knotted-1, putative	-	-	1.152e-11	-

Source	Gene names
Sma3	ARBORKNOX1; At4g08150; BP; BP1; F9M13.2; GSVIVT00002753001; GSVIVT00015017001; GSVIVT00016046001; GSVIVT00022604001; H1; HBK2; HBK3; HOS3; Hop1; Ibkn1; Ibkn2; Ibkn3; Ibkn4; K; KN-1; KN1; KN2; KN3; KN4; KN5; KNAT1; KNOPE1; KNOPE2; KNOX; KNOX1; KNOX2; KNOX3

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	cell fate specification	GO:0001708	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	ELK	IPR005539	-	-
Sma3	KNOX1	IPR005540	-	-
Sma3	KNOX2	IPR005541	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G08150.1	KNAT1, BP, BP1 KNOTTED-like from Arabidopsis thaliana chr4:5147969-5150610 REVERSE LENGTH=398	58%
RefSeq	Arabidopsis thaliana	NP_192555.1	homeobox protein knotted-1-like 1 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002301134.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5SC62

Fln msg: your sequence is shorter than subject: 285 - 438

Fln protein: HQHHQQEASRMVTSLEVDIDSACSSNPNDSIDALKSKIASHPHYPQLLAAYMDCQKVGAPPEVVTVLDEIIQENQLGRHSGTMDIGVDPELDQFMEAYCQMLIKYHLELTKPFKEARTFLNKMETQLNCLSKGAIRSFPSGYCDEREDGGGSSEEEFSCGEIEVHEVDPRAEDRELKDQLLRKYSGYFSSLKQEFLKKKKKGKLPKEARQKLLEWWNVHYKWPYPSETDKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDSLNPHGASFYMDGADC*

Protein Length: 286

Fln nts: ACCACCAGCACCACCAACAAGAAGCCAGCAGGATGGTGACTTCCTTGGAGGTCGATATCGATAGTGCTTGTTCCAGTAACCCTAACGATTCCATTGATGCGCTGAAATCAAAAATTGCTTCCCATCCTCACTATCCTCAGCTGTTGGCAGCTTACATGGATTGCCAGAAGGTTGGGGCTCCTCCAGAAGTTGTCACAGTACTGGATGAGATTATTCAGGAGAATCAGCTTGGACGCCATTCGGGAACTATGGATATAGGAGTGGATCCGGAGCTTGATCAATTCATGGAGGCCTACTGCCAGATGTTGATCAAGTACCATTTAGAACTAACGAAGCCATTCAAAGAAGCGAGAACGTTTCTGAACAAGATGGAGACACAGCTAAATTGCTTGAGTAAAGGAGCTATCAGGAGTTTCCCTTCAGGCTACTGCGACGAAAGGGAAGATGGAGGTGGATCCTCGGAAGAGGAGTTCAGCTGTGGCGAAATCGAAGTTCACGAAGTTGATCCGCGTGCGGAAGATAGGGAATTGAAAGATCAACTCCTCCGCAAGTACAGTGGATACTTCAGCAGTCTCAAGCAAGAATTTCTAAAGAAGAAAAAGAAAGGAAAACTCCCGAAGGAGGCAAGGCAGAAGCTACTTGAGTGGTGGAATGTACATTACAAGTGGCCATATCCTTCGGAAACAGACAAGGTCGCTTTGGCTGAAAGTACTGGTCTGGATCAGAAGCAAATAAATAATTGGTTCATAAACCAGCGAAAGCGCCACTGGAAACCTTCAGAGGATATGCAGTTTGTGGTCATGGATAGTCTAAATCCTCACGGTGCTTCCTTTTATATGGATGGAGCCGACTGCTAA___AAGTATTGGCTGCTGTCTGTTCGGTTGATCGCCATGTTATGGCTTGCCATGTTCCTTATATATGGCAGATATTTATTTGAATGTATAAATATCCCATGTATATGTATTTCTCAGTGACAGTTCTCAATGAACGTTCTAGTTTCCCAACCTGTTAATGTATAAATGTCAAATGTTTTCTAGAAGCGTTTTGCTGTGATCAATCTGTCTTCTCAAAATGGGTCCGTGTCATTGATCTTTTTTACATTGGAAGGTGATGCAATGTACACGCGCGTACTTGGAAAACATTCATTTACTAATAAATTAGCGGATCAGACTAACATTTATAGGGACAATTACACTAACATAGATAATGCAAATTTAAATATTATTAATTTAAATTTGTATAATGCATGCTATATACAAATAAAGGCTACTGAGTGGCAGCGTCTCAACGTATTTCCCCGAGTTAGATAAAGGCTCTGAGTGGTAGATTCCTAGCGTTCTTTAGCGAGTTAAAAACAATGCAGTGACATCATGCACTGGTTTTTCACATACTATATAAAACAATGCCGAATTTTGAAACACATGGTATTGAACTCATATGCAATGTT

Fln Alignment:

Contig8275___HHQQEASRMVTSLEVDIDSACSSNPNDSIDALKSKIASHPHYPQLLAAYMDCQKVGAPPEVVTVLDEIIQENQLGRHSGTMDIGVDPELDQFMEAYCQMLIKYHLELTKPFKEARTFLNKMETQLNCLSKGAIRSFPSGYCDXXXXXXXXXXXXXXXXXXXVHEVDPRAEDRELKDQLLRKYSGYFSSXXXXXXXXXXXXXXXXEARQKLLEWWNVHYKWPYPSETDKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDSLNPHGASFYMDGADC
Q5SC62______________HHHQEASRMVTSLEVDIDSACSSNPNDSIDTLKTKIACHPHYPQLLAAYMDCQKIGAPPEVVTVLDEISQENQLGRHLATMDIGVDPELDQFMEAYCQMLIKYHLELSKPFKEARTFLNKMETQLNCLSKGAIRSFPSGYCDEREDGGGSSEEEFSCGEIEVHEVDPRAEDRELKDQLLRKYSGYFSSLKQEFLKKKKKGKLPKEARQKLLEWWNVHYKWPYPSETDKVSLAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDSLNPHGASFYMDGADC

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
195	25	75			0.996473
304	88		11		0.923564
498		83		16	0.994512
499			83	16	0.994512
574	25	75			0.996473
576		75	25		0.996473
577	75		25		0.996473
722	90		10		0.90298
852	23	76			1.0
879			21	78	1.0
1036		90	10		0.90298
1039		10	90		0.90298
1040	87	12			0.992554
1075	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain