SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8268

Length: 912 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8268

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cytochrome P450 protein [Oryza sativa Japonica Group] gb\|AAP54351.1\| Cytochrome P450 family protein, expressed [Oryza sativa Japonica Group]	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Cytochrome P450	-	-	1.798e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	1.249e-06	-
Sma3	Unspecific monooxygenase.	EC:1.14.14.1	-	9.796e-30	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	9.796e-30	%
Sma3	Steroid hormone biosynthesis	00140	9.796e-30	%
Sma3	Caffeine metabolism	00232	9.796e-30	%
Sma3	Tryptophan metabolism	00380	9.796e-30	%
Sma3	Arachidonic acid metabolism	00590	9.796e-30	%
Sma3	Linoleic acid metabolism	00591	9.796e-30	%
Sma3	Aminobenzoate degradation	00627	9.796e-30	%
Sma3	Retinol metabolism	00830	9.796e-30	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	9.796e-30	%
Sma3	Drug metabolism - cytochrome P450	00982	9.796e-30	%
Sma3	Drug metabolism - other enzymes	00983	9.796e-30	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	9.796e-30	%
Sma3	Metabolic pathways	01100	9.796e-30	%

Source	Gene names
Sma3	AT4g39480; AT4g39490; AT4g39500; A_IG005I10.21; At1g01600; At1g01600/F22L4_10; At1g13150; At1g24540; At1g34540; At1g47620; At1g57750; At1g63710; At1g69500; At1g69500/F10D13_15; At2g23180; At2g23180/T20D16.19; At2g44890; At2g45510; At2g45970; At3g26125; At

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3		GO:0008393	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	wax biosynthetic process	GO:0010025	Biological Process	-
Sma3	suberin biosynthetic process	GO:0010345	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G08250.1	Cytochrome P450 superfamily protein chr5:2653766-2655595 REVERSE LENGTH=488	52%
RefSeq	Arabidopsis thaliana	NP_196442.2	cytochrome P450 86B1 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002311750.1	cytochrome P450 [Populus trichocarpa]	54%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
235			20	80	0.995493
236	80		20		0.995493
240	28			71	1.0
242		71	28		1.0
273	87			12	0.992554
348	83		16		0.994512
413	16			83	0.994512
445	80		20		0.995493
495			33	66	0.997452
618	33		66		0.997452
636	33		66		0.997452
637	33		66		0.997452
698			83	16	0.994512
699	83		16		0.994512
706		16		83	0.994512
747	83			16	0.994512
755	16		83		0.994512
756		16		83	0.994512
758			83	16	0.994512
764	20			80	0.995493
766		80	20		0.995493
767	80			20	0.995493
813	85	14			0.993533
844		14		85	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain