SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8252

Length: 3014 nt

UniGene Fasta

>sp_v3.0_unigene8252
CGTCGTGACCTTGGCTGTCACTCAATCTACACCCGTCGCCTCCTATGTCACTTTAACTCAAAACGTACTGCCGACTTTGACAAAAGAAACGAACCAGGAATAAGCCCTCTTGCAATCCATTCCTTCCTTCCTGTCCAAGCCTCGCACTGCAGGTGGGTGCTCCATATTTGCCCCGTATTTAATGCGGATTGCAATCATCAATGGTAAAACGGGCCTGGAAAAACCCGTGATTCCTGTTGCAGAATTCTTTAAAATGGCCTTAATACCCAGTTCATCCTAGCCCTCCACCATGAATTCTTCTTAGAATTCTTAGACCGATTAGCAATGGAGTCTCCTGTTAAAACTCCCAATATCTCCGGAATGCTCCACCGCTTTGCCCGGAGCTGCAAGTTGCGATCAATCGAATTCCTTGCCGAGCTCAACGACTTCCCGGAAGGATACCCCAATCCCCCTTTGCTCGAACAGGTCGATGGAGATGGAGCCGAGCCTAATGAAAAAGCTCAACAACCCTCATCCCAATCTCACCAATCATCATTCACGAAGGTTCATTCTGTTGAGGATTCCCCCCCAAGTCCCGCGCAGGGCCGTAGCGCAAACCTAAGTTCAAATAAAGGGTGTGAGCCCCCAGTTTTCCCTCGAAACCCAAATGAATACGCTTCTAAAAAAGTGGCTCAACCCACATCCGCAGGAAATTTTCAAGGACCTAATTTGAATTCTGAGGCCATGGAGGCCATGGTTTCGAATCTCTTCTCTAATATCTCGGCTTTCAAGGCCGCCTATGTACAGCTACAGACCGCCCACACGCCCTTGGATGTGCACAACATCCAGGCCGCCGACAGGGCCGTCATAGCTCAGCTCCAGAAGCTCTCGGAACTCAAGCGCTGTTACAAAAATGGATGCAAGGAGGCTCCACCCGATACCCACCTGCAGGCTCAGGTCCATGAGCGCCAGTGCATGCTCAGAACATATGAGATGATGCTCAACAGGCTTGAGTCCGAGATTGAAATGAAAGACACAGAGGTTGACATGATTAGGGAACAGATTAAGAAAACTAAGGAGACGAATGCGAGATTGGAGAAGAAATTGCAGGAGCCAGAGATGGTTTTGAACACTCAGATGTTTGTTAAATCTGTGCAGGAGGCATCCAAGGAAGTCCATGGATTCGCTAAGATTTTGATTAATCAGATGAAGTCTGCAGAGTGGGATTTGGATTCTGCTGCAAATTCAATCCATCCTGATATCAGGTATGCTAAGAGAACCCATAAAAAGTTCGCTTTTGAGTCCTATGTTTGCAATGGAATGTTTGGGGGTTTTGAGAATGAGGATTTTTATATAAATGGAGGGTTGTCTTCAATCATAGATCCCGAAAAACACAGGCTTGAGTGCTTTACCGAGTACCAGGACTTGAAATCTCAGGACCCTTTTGCGTTTTTGGCCTCGGCACCCCCTGATTGCCTGTTTGGGCAATCCTGACATAAGAAGTCACTCATTTGCAGGTTGTGCATCCCAAGATGGAGGAATCCTTTTTTGGGAATCTTGACCAAAGGGACCATGTTGTCAATGGCATACATCCGAAAACGGACTTCTATGAAGCCTTCTTGAAGCTTGCCAAGGCAATCTGGCTTGTGCACAGATTGGCATTTTCCTTTGACCCTGTTGTCAGTATATTTCAGGTTAGGAGGGGGACTGACTTTTCAGTGGTGTATATGGAGAGTGTTGTACATGGAGTGTTGTCTGGTTACGATGCTTTGGATGGGAGGCCTAAGGTGGGTTTTACTGTTATGCCGGGTTTCCGTGTCAGCAAGGCCGTGATCCAGTGCCAAGTTTATCTCACAGGCATAAAAGGCAGGGATTAGTTGGAAGGATTGGAAGGACTCTGTGTCAATCGCATGAATTAGCCTTGTTATCTAAACCCATTTGTTTGAATTTAGGTCAAAACAGAGACTGATTTACACACAGATCAGAATGCATAGAGAAGCCAGTTAGGTATTCGTTGTAGTTTTTGAGAATTTCTCATAAACTGCCCATGTAGAAAGCCTTAATATTTCAGAACATTATCTGGAAGTAAAGCCAACCTCATAATGAATGCTAATATATTTTAGGCAACAGAGTTCCTGTGGTTTTCTTCATGATCTGGTTTTCGGCATGTATAATGTTAATGCGAGGGCTTTGAGCGGAGCATAGATTCAAATTTGACAGTCGGGCCCAGTCATCAATGCGCAGAGCTTCTTTGAATATGTAGGGCAGTTCCGGACAATGTTTAGCTTCAAAAGTTGCCAAGGCAACAGTTACAGTATATGAAGCTGTGCAGAATGTGTTCAAATTGTGTCCGTGACTTGAGGTGTAGAAATGAGCACTGATCTTGTTGGATCAGGAAAAATAATCTGCGATGGCTATTGACATCAGCCCTTTTTATCTATGTTAGGAGGCCACCCTTGGTGGAAATGTATCGTTTAAAATAATTAGATTATGTGCAGAAGGCAGTATAATTCATGACTCTCAAGATGGTGCTACAGTAAGTGAGTCTTCTGCCTGTAAAGTTGAGGGCTTTCAACATTGTTTGAGATGGATACTTATGCAGAGGAAGCTGAATTTTTTTCAAAAGTACTTTTTCTGGGATTTTGAGCTAACAAAGCTCAGGGCTTAAACATAACCCTATGCTTATTAGACACTTACTTTCTCGCCATGGCTTCGGAGGTCCACAGCTGATCGGATTGTATACTTTCTATCAAAATTCTCAGCTGCCCACTAACTCATGTGTTGTACACCTTTGTTTCACCTAAAAAGTGAGGAGATCACCAAGGTTGTATCATCCAAACGAATGCAGCATGATCAAGCCCCTACTTCAATTAGTGTTCTCAGGAATGGTTTACTTATGTGCGTACTCAGTACTTATATTTATTATTATTTCTTTTAGTTTTGATGTAGCTAAGTGAAATTTGAAAATACAAGTGCAAGGGATGTCTTGGGTTATTGCGTGTTTTTAATACAAATCATACAGTAGATTGCTTATA

Ace file of the UniGene sp_v3.0_unigene8252

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF641 domain containing protein	-	-	8.0e-38	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Gene names
Sma3	AT4g33320; AT4g34080; At2g45260; At4g33320; At4g34080; F17M5.80; GSVIVT00026382001; Os10g0378400; OsI_34263; OsJ_32107; POPTRDRAFT_650190; RCOM_1610860; RCOM_1611200;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF641, plant	IPR006943	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC56

Fln msg: Overlapping hits, possible frame ERROR between 1539 and 1491, your sequence is longer than subject: 511 - 214

Fln protein: MESPVKTPNISGMLHRFARSCKLRSIEFLAELNDFPEGYPNPPLLEQVDGDGAEPNEKAQQPSSQSHQSSFTKVHSVEDSPPSPAQGRSANLSSNKGCEPPVFPRNPNEYASKKVAQPTSAGNFQGPNLNSEAMEAMVSNLFSNISAFKAAYVQLQTAHTPLDVHNIQAADRAVIAQLQKLSELKRCYKNGCKEAPPDTHLQAQVHERQCMLRTYEMMLNRLESEIEMKDTEVDMIREQIKKTKETNARLEKKLQEPEMVLNTQMFVKSVQEASKEVHGFAKILINQMKSAEWDLDSAANSIHPDIRYAKRTHKKFAFESYVCNGMFGGFENEDFYINGGLSSIIDPEKHRLECFTEYQDLKSQDPFAFLASAPPDCLFGQS*HKKSLxxxxxxxxxxxxxxxxxxQRDHVVNGIHPKTDFYEAFLKLAKAIWLVHRLAFSFDPVVSIFQVRRGTDFSVVYMESVVHGVLSGYDALDGRPKVGFTVMPGFRVSKAVIQCQVYLTGIKGRD*

Protein Length: 512

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTACACCCGTCGCCTCCTATGTCACTTTAACTCAAAACGTACTGCCGACTTTGACAAAAGAAACGAACCAGGAATAAGCCCTCTTGCAATCCATTCCTTCCTTCCTGTCCAAGCCTCGCACTGCAGGTGGGTGCTCCATATTTGCCCCGTATTTAATGCGGATTGCAATCATCAATGGTAAAACGGGCCTGGAAAAACCCGTGATTCCTGTTGCAGAATTCTTTAAAATGGCCTTAATACCCAGTTCATCCTAGCCCTCCACCATGAATTCTTCTTAGAATTCTTAGACCGATTAGCA_-_ATGGAGTCTCCTGTTAAAACTCCCAATATCTCCGGAATGCTCCACCGCTTTGCCCGGAGCTGCAAGTTGCGATCAATCGAATTCCTTGCCGAGCTCAACGACTTCCCGGAAGGATACCCCAATCCCCCTTTGCTCGAACAGGTCGATGGAGATGGAGCCGAGCCTAATGAAAAAGCTCAACAACCCTCATCCCAATCTCACCAATCATCATTCACGAAGGTTCATTCTGTTGAGGATTCCCCCCCAAGTCCCGCGCAGGGCCGTAGCGCAAACCTAAGTTCAAATAAAGGGTGTGAGCCCCCAGTTTTCCCTCGAAACCCAAATGAATACGCTTCTAAAAAAGTGGCTCAACCCACATCCGCAGGAAATTTTCAAGGACCTAATTTGAATTCTGAGGCCATGGAGGCCATGGTTTCGAATCTCTTCTCTAATATCTCGGCTTTCAAGGCCGCCTATGTACAGCTACAGACCGCCCACACGCCCTTGGATGTGCACAACATCCAGGCCGCCGACAGGGCCGTCATAGCTCAGCTCCAGAAGCTCTCGGAACTCAAGCGCTGTTACAAAAATGGATGCAAGGAGGCTCCACCCGATACCCACCTGCAGGCTCAGGTCCATGAGCGCCAGTGCATGCTCAGAACATATGAGATGATGCTCAACAGGCTTGAGTCCGAGATTGAAATGAAAGACACAGAGGTTGACATGATTAGGGAACAGATTAAGAAAACTAAGGAGACGAATGCGAGATTGGAGAAGAAATTGCAGGAGCCAGAGATGGTTTTGAACACTCAGATGTTTGTTAAATCTGTGCAGGAGGCATCCAAGGAAGTCCATGGATTCGCTAAGATTTTGATTAATCAGATGAAGTCTGCAGAGTGGGATTTGGATTCTGCTGCAAATTCAATCCATCCTGATATCAGGTATGCTAAGAGAACCCATAAAAAGTTCGCTTTTGAGTCCTATGTTTGCAATGGAATGTTTGGGGGTTTTGAGAATGAGGATTTTTATATAAATGGAGGGTTGTCTTCAATCATAGATCCCGAAAAACACAGGCTTGAGTGCTTTACCGAGTACCAGGACTTGAAATCTCAGGACCCTTTTGCGTTTTTGGCCTCGGCACCCCCTGATTGCCTGTTTGGGCAATCCTGACATAAGAAGTCACTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAAAGGGACCATGTTGTCAATGGCATACATCCGAAAACGGACTTCTATGAAGCCTTCTTGAAGCTTGCCAAGGCAATCTGGCTTGTGCACAGATTGGCATTTTCCTTTGACCCTGTTGTCAGTATATTTCAGGTTAGGAGGGGGACTGACTTTTCAGTGGTGTATATGGAGAGTGTTGTACATGGAGTGTTGTCTGGTTACGATGCTTTGGATGGGAGGCCTAAGGTGGGTTTTACTGTTATGCCGGGTTTCCGTGTCAGCAAGGCCGTGATCCAGTGCCAAGTTTATCTCACAGGCATAAAAGGCAGGGATTAG___TTGGAAGGATTGGAAGGACTCTGTGTCAATCGCATGAATTAGCCTTGTTATCTAAACCCATTTGTTTGAATTTAGGTCAAAACAGAGACTGATTTACACACAGATCAGAATGCATAGAGAAGCCAGTTAGGTATTCGTTGTAGTTTTTGAGAATTTCTCATAAACTGCCCATGTAGAAAGCCTTAATATTTCAGAACATTATCTGGAAGTAAAGCCAACCTCATAATGAATGCTAATATATTTTAGGCAACAGAGTTCCTGTGGTTTTCTTCATGATCTGGTTTTCGGCATGTATAATGTTAATGCGAGGGCTTTGAGCGGAGCATAGATTCAAATTTGACAGTCGGGCCCAGTCATCAATGCGCAGAGCTTCTTTGAATATGTAGGGCAGTTCCGGACAATGTTTAGCTTCAAAAGTTGCCAAGGCAACAGTTACAGTATATGAAGCTGTGCAGAATGTGTTCAAATTGTGTCCGTGACTTGAGGTGTAGAAATGAGCACTGATCTTGTTGGATCAGGAAAAATAATCTGCGATGGCTATTGACATCAGCCCTTTTTATCTATGTTAGGAGGCCACCCTTGGTGGAAATGTATCGTTTAAAATAATTAGATTATGTGCAGAAGGCAGTATAATTCATGACTCTCAAGATGGTGCTACAGTAAGTGAGTCTTCTGCCTGTAAAGTTGAGGGCTTTCAACATTGTTTGAGATGGATACTTATGCAGAGGAAGCTGAATTTTTTTCAAAAGTACTTTTTCTGGGATTTTGAGCTAACAAAGCTCAGGGCTTAAACATAACCCTATGCTTATTAGACACTTACTTTCTCGCCATGGCTTCGGAGGTCCACAGCTGATCGGATTGTATACTTTCTATCAAAATTCTCAGCTGCCCACTAACTCATGTGTTGTACACCTTTGTTTCACCTAAAAAGTGAGGAGATCACCAAGGTTGTATCATCCAAACGAATGCAGCATGATCAAGCCCCTACTTCAATTAGTGTTCTCAGGAATGGTTTACTTATGTGCGTACTCAGTACTTATATTTATTATTATTTCTTTTAGTTTTGATGTAGCTAAGTGAAATTTGAAAATACAAGTGCAAGGGATGTCTTGGGTTATTGCGTGTTTTTAATACAAATCATACAGTAGATTGCTTATA

Fln Alignment:

Contig8252___MFGGFENEDFYINGGLSSIIDPEKHRLECFTEYQDLKSQDPFAFLASAPPDCLFGQS*HKKSLIxxxxxxxxxxxxxxxxDQRDHVVNGIHPKTDFYEAFLKLAKAIWLVHRLAFSFDPVVSIFQVRRGTDFSVVYMESVVHGVLSGYD-----ALDGRPK----------VGFTVMPGFRV-SKAVIQCQVYL
D5AC56______________MFNGFENENFYLTGSLSSIIDPEKHRNDCFTQFLDMQNMEPSELVSNITPDCLFGKFCMKKFL-xxxxxxxxxxxxxxxxEHRDQIAKGLHPKSQFYSLFLKFAKSVWLVHRLAFSFAPPVSIFHVKRGVDFHDSYMDS-LNSVNMNHDVANNVATEGNTQEHPEKQNPTIIGFTVMPGFRVGKKAIVKCQVYV

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
182	80			20	0.995493
185		80	20		0.995493
188	80		20		0.995493
263	87		12		0.992554
264		12		87	0.992554
265	87			12	0.992554
266		87	12		0.992554
267		87		12	0.992554
270		12	87		0.992554
272		12		87	0.992554
273	12	87			0.992554
282		87		12	0.992554
455		14		85	0.993533
533		80		20	0.995493
630	33		66		0.997452
631	33			66	0.997452
633			33	66	0.997452
863			83	16	0.994512
864	83		16		0.994512
865	83		16		0.994512
935		33		66	0.997452
1007	66	33			0.997452
1010			66	33	0.997452
2027		83		16	0.994512
2128	14	85			0.993533
2129	14			85	0.993533
2131		85	14		0.993533
2132	85			14	0.993533
2208		50		50	1.0
2332			16	83	0.999991
2461	87		12		0.992554
2601		33		66	1.0
2602	33			66	1.0
2636		85		14	0.993533
2696			14	85	0.993533
2701	85			14	0.993533
2799			85	14	0.993533
2819		83		16	0.994512
2894			85	14	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
120	132	TTCC TTCC TTCC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain