SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8245

Length: 1201 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8245

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin n=6 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	74%
FL-Next	tr=Expansin; Pinus taeda (Loblolly pine).	-	-	74%
Sma3	Expansin	-	-	-

Source	Gene names
Sma3	AT1G69530; At1g26770; At1g69530; At2g28950; At2g37640; At2g39700; At2g40610; At3g55500; At4g01630; At5g02260; At5g05290; At5g56320; CDK3; CDK4; CDK5; CDK6; CDK7; Cs-EXPA1; Cs-EXPA2; EXP03; EXP1; EXP10; EXP11; EXP12; EXP13; EXP14; EXP15; EXP16; EXP17; EXP1

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	syncytium formation	GO:0006949	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	plant-type cell wall loosening	GO:0009828	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G40610.1	ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11, EXPA8 expansin A8 chr2:16949121-16950472 REVERSE LENGTH=253	63%
RefSeq	Arabidopsis thaliana	NP_181593.1	expansin A8 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002325925.1	hypothetical protein POPTRDRAFT_665631 [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9SWY1

Fln msg:

Fln protein: MKTFAELLVALGVAFFIVNLLPPACGDDEPTLGWKHAHATFYGGSDASGTLGGACGYGDLYSQGYGTNTVALSTALFNDGLSCGGCYEIRCRMKADPQWCLPGTSVVVTATNFCPPNYAEANDNGGWCNPPLRHFDMAMPAFEQIAKVKGGIVPVRYRRVYCAKNGGIRFTINGQRYFIMVMVTNVGRAGDVISVSVKASNSDLWEPMVRNWGQNWQTGNSQLVGQSLSFSVTTSDGNTAISPEVAPPNWQFGQTFEGNQF*

Protein Length: 263

Fln nts: CTTTGCTGGGAATCAATACCTCATTGTTCAATTATTTCTCAGTAGTACTGAGAATATTTTGGCCGGCGTTCAACGTTAATCAATCTCTGCGGTGTCGATTGTGGTTTGGTGGTTTCTCCGGCTAAATC_-_ATGAAGACATTCGCAGAGCTGCTAGTGGCGTTGGGCGTCGCATTCTTCATCGTCAATTTGCTTCCACCAGCTTGTGGAGATGATGAGCCGACGTTGGGGTGGAAACATGCTCACGCTACTTTCTATGGCGGATCAGATGCTTCGGGAACATTGGGAGGAGCCTGTGGATATGGAGATTTATACAGCCAAGGGTATGGAACGAACACTGTCGCTCTGAGTACCGCGTTGTTCAACGACGGGTTGAGCTGCGGAGGGTGCTACGAAATTCGATGCAGGATGAAGGCGGATCCACAGTGGTGCCTCCCAGGCACTTCTGTCGTTGTCACGGCCACCAATTTCTGCCCACCAAACTACGCCGAGGCCAATGACAACGGTGGGTGGTGCAACCCGCCTCTGCGCCACTTCGACATGGCCATGCCAGCTTTTGAGCAGATAGCCAAGGTCAAAGGGGGTATCGTACCTGTACGCTACAGAAGAGTGTACTGTGCGAAGAATGGAGGAATCCGATTCACAATAAATGGACAACGCTACTTCATAATGGTGATGGTGACCAACGTTGGAAGAGCGGGCGACGTTATCTCTGTATCAGTTAAAGCTTCCAACTCCGACCTGTGGGAACCAATGGTGCGCAATTGGGGCCAGAATTGGCAGACAGGCAATTCTCAGTTAGTTGGCCAAAGTCTCTCCTTCAGCGTCACCACCAGCGATGGCAACACGGCTATTTCCCCTGAAGTAGCCCCTCCTAACTGGCAGTTCGGCCAAACCTTTGAAGGAAATCAATTTTGA___ATATTCACATTTCTTCATCATCACCTCATGCTGCCTGCTCCAAAGTACAATCAGTAAATAAATATACAAATTATGTCATCTATTCTGTATGACCTGAATGGTTTTAGGCTAGGCAGGCCAATACAGACAAATTATATAGTTTGTTTTGTGAATATGTGACCAGAATAATTTGAAGCAAGGCGAGGAACTGATTGGATTGGTTTTCTTTTTGACCTGAGATTAAATTTGACTATGTAATATCTTTTTATCTAATAAAAAGTTTTTTGTTTTTCACAGCATTGGTATCC

Fln Alignment:

Contig8245___GWKHAHATFYGGSDASGTLGGACGYGDLYSQGYGTNTVALSTALFNDGLSCGGCYEIRCRMKADPQWCLPGTSVVVTATNFCPPNYAEANDNGGWCNPPLRHFDMAMPAFEQIAKVKGGIVPVRYRRVYCAKNGGIRFTINGQRYFIMVMVTNVGRAGDVISVSVKASNSDLWEPMVRNWGQNWQTGNSQLVGQSLSFSVTTSDGNTAISPEVAPPNWQFGQTFEGNQ
Q9SWY1______________GWESAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGLSCGACYEMRCN--DDPQWCLPGT-VTVTATNFCPPNNALPNDNGGWCNPPLQHFDMAEPAFLKIAKYRGGIVPILYTRVPCLRKGGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSRSG-WQPMSRNWGQNWQS-NSYLNGQSLSFQVTTSDGRTVVSNNVAPSNWQFGQTFEGSQ

SNPs (tot: 4)

Position	C %	G %	T %	Probability
64	87	12		0.992554
803	12		87	0.992554
854	87		12	0.992554
1032	93		6	0.999364

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain