SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8236

Length: 1357 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8236

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable phytol kinase 3, chloroplastic n=2 Tax=Glycine max RepID=PHYK3_SOYBN	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Probable phytol kinase 2, chloroplastic	-	-	1.087e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.-.-	-	7.311e-25	-

Source	Gene names
Sma3	At5g04490; At5g58560; CHLREDRAFT_173650; GSVIVT00018069001; GSVIVT00024054001; GSVIVT00024056001; LOC_Os01g61560; LOC_Os11g01450; LOC_Os12g01480; MICPUCDRAFT_5805; MZN1.8; Os01g0832000; Os11g0105800; Os12g0105500; OsI_04308; OsI_37144; OsI_37159; OsJ_0396

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	phytol kinase activity	GO:0010276	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	-
Sma3	vitamin E biosynthetic process	GO:0010189	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidate cytidylyltransferase	IPR000374	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G58560.1	Phosphatidate cytidylyltransferase family protein chr5:23670513-23672570 FORWARD LENGTH=307	60%
RefSeq	Arabidopsis thaliana	NP_200664.1	putative phytol kinase 2 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002313238.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Z1

Fln msg:

Fln protein: MGTRRRHIIVATMFSPTVCTSFSKSHYHPIHPCVKLSLSSLLINVPTSYTTAKTPSTSSPIHHIRTKLPHLILFNEHSTPSTISHFGSRSARQFSESLLVRGSQFRIAMDAFQVGCSQNGGHGTCSAKAGSSMNFGWFNHGSTISAISTHNQIIHDILASGFTALVALACLRFWDEMAKRDVFDQKLNRKFVHISIGLIFMLFWPLFSTGHQASYLAALAPGLNIFRMIGLGLGILKNEAMVKSMSRHGNARELLKGPLYYASTITLVTVIFWRISPIGPVTISNLCAGDGFADIVGRRLGTVKLPYNKNKSFAGSFTMLLMGFAFSVGYMFYFASFGYYEVSTRMILSTLLISMVATVVESLPISTEMDDNLTVPLVSVLVGALLL*

Protein Length: 389

Fln nts: _-_ATGGGGACCCGCAGACGACATATAATTGTAGCAACGATGTTTTCTCCCACGGTGTGTACGAGTTTCTCTAAATCTCATTATCACCCGATTCACCCCTGTGTTAAGTTGTCGTTGTCATCACTGCTAATAAATGTTCCAACTTCTTACACCACTGCTAAAACGCCATCGACGAGCTCCCCTATCCATCATATCCGCACCAAACTCCCTCATCTCATTTTGTTTAATGAGCATTCAACTCCCTCTACTATCAGCCATTTTGGTAGTAGATCGGCAAGGCAGTTTAGTGAATCTCTGCTCGTAAGGGGCAGCCAATTCAGAATTGCCATGGATGCCTTTCAGGTGGGTTGCTCTCAGAATGGTGGACATGGGACCTGCTCTGCTAAAGCTGGCAGTTCGATGAATTTTGGATGGTTTAATCATGGCTCGACCATTTCCGCTATATCTACACACAACCAGATTATACATGATATACTAGCATCAGGGTTCACAGCTTTAGTAGCTCTTGCTTGCCTTCGGTTCTGGGACGAGATGGCCAAGCGAGATGTATTTGATCAGAAATTGAATCGCAAGTTCGTGCATATAAGCATTGGCCTCATTTTTATGCTCTTTTGGCCTCTTTTCAGCACTGGTCATCAGGCATCTTATTTGGCAGCATTAGCACCTGGACTGAATATATTCCGAATGATTGGATTGGGACTGGGAATATTGAAAAATGAGGCTATGGTCAAATCCATGAGCAGACATGGAAATGCCAGGGAACTTTTGAAGGGACCACTTTACTATGCAAGTACAATAACATTGGTTACTGTCATATTTTGGAGGATCTCCCCCATTGGTCCTGTCACAATTTCCAACTTATGTGCTGGAGATGGCTTTGCAGATATAGTAGGAAGAAGACTGGGAACTGTAAAACTTCCTTACAACAAAAACAAATCCTTTGCTGGTAGCTTTACAATGCTACTCATGGGATTCGCCTTTTCTGTAGGGTATATGTTTTATTTTGCATCTTTTGGTTATTATGAAGTCAGCACAAGAATGATTTTGTCAACTCTCCTTATATCCATGGTGGCAACTGTTGTGGAGTCTTTGCCCATCAGTACTGAAATGGATGATAATCTTACTGTTCCATTGGTTTCTGTGTTAGTTGGTGCGTTGCTATTATAA___TCTTGTCAAATCAATAAAAAATGGCGTACCTGCTTTTTTGCTACAACATGCTCTTTAGCATGTGGTCTTGAATTTGAGAATGCACAAATCAAACTAAATTGATACGCTGGTTCCCATCTAACAATATAAAGCCTGGCCCTGTATCTTAAAATAGTTATGCATAATCTATGGTGTATGTTTTTCATAATATTAT

Fln Alignment:

Contig8236___MFSPTVCTSFSKSHYHPIHPCVKLSLSSLLINVPTSYTTAKTPSTSSPIHHIRTKLPHLILFNEHSTPSTISHFGSRSARQFSESLLVRGSQFRIAMDAFQVGCSQNGGHGTCSAKAGSSMNFGWFNHGSTISAISTHNQIIHDILASGFTALVALACLRFWDEMAKRDVFDQKLNRKFVHISIGLIFMLFWPLFSTGHQASYLAALAPGLNIFRMIGLGLGILKNEAMVKSMSRHGNARELLKGPLYYASTITLVTVIFWRISPIGPVTISNLCAGDGFADIVGRRLGTVKLPYNKNKSFAGSFTMLLMGFAFSVGYMFYFASFGYYEVSTRMILSTLLISMVATVVESLPISTEMDDNLT
D5A9Z1______________MISSTVCSCFSNSHYHRIHPSAKLSLSSLLVNVPTSYPTAKTPLTRSPVYHILTIRRHLILFNEHSAPSAISHFDSRSTRYFSGYLLTRGSPFRAVMDAFQVGCSQNGGHGTCSAKTESLMNFGWFNHGSIIPIISTHNQIVHDIIASALTALVALACLRFWDEMAKRDVFDQKLNRKFVHISIGLIFMLFWPVFSTGPQAPYLAALAPGLNIFRMIGLGLGILKNEAMVKSMSRHGNARELLKGPLYYASTITLVTVIFWRISPIGPVTISNLCAGDGFADIVGRRLGTVKLPYNKNKSFAGSFTMLLMGFIFSVGYLFYFASFGYYEVSTRMILSSLLISIVATVVESLPISTELDDNLT

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
364		75		25	0.996473
818		16		83	0.999991
949	12	87			0.992554
951			12	87	0.992554
952			12	87	0.992554
953	87		12		0.992554
1005		66		33	0.997452
1019	20			80	0.995493
1023	80			20	0.995493
1075		20		80	0.995493
1191	20		80		0.999996
1205			87	12	0.992554
1207		87	12		0.992554
1298	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain