SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8231

Length: 3701 nt

UniGene Fasta

>sp_v3.0_unigene8231
ATGGGGGTATGTATGCATGTAAGATGGACGCAAGGGGATTTCATTTTGACCCTGGTTAAACGTCATAGTTGGTTGGCTAGACGTGACCATTCCCGTCACTCGGGAATGGTGGTTGCCGTCGGTTGTGGAATTCTGTAGAGGGAGAGAGAGTGAGAATTGCAGTCTGAATATCGCTCTGTAATTTGCATTTTGCGTTTCTTCTTCCATAGAGGAACCGAAGTTACTGCTGACATGCTCTCTTTTCCTCTGCATTCTTCCCTCATATTGCATTTGTGTTCCATTAAATTCGTTTCATTGCAGGAACTGACATTTTCATTTGCAAATCGAACCAGGCATCGCTCACTGCAACCCTAGCTTGCGCTGGGATCTTTTCTAGGGTTTCTTGCGCTTCTGTGGCGATTATTTTGCGTTGCAGAGGAATGTAGGATTGCAGGTTATGTAAGTTAGGCGTGGTGAAAAGAAGAATGGCGTTTGCAGGCCACAGAAGCAGCGGGGGTTCGAACATGGGAGGTAAGGGGACTGTGAGACTAGAGAGACCGCCGTCTATTAATACTTTGTCGTCGAATAGATCGAATACTGGTGTCGTGGCGTCCAGTGCTCCCTCGTCGTCGGTTCCGCCTGCAGGCCGGCCGAAGTCATCGTCTTCTTCGCCGTCCTTCTCTAGGCGCAACAGCATAGGGTCGCCTCGCAATGGCAAAGATGATTGTGGAGTGCCAGGACGAGTGAGAGTAGCTGTAAGACTGCGTCCTAGGAATCCAGAGGAGCTTGTTGCAGATGCAGATTTTGCAGATTGCGTGGAGCTTCAGCCAGAGCTCCAACGGTTGAAGTTGCGAAGGAACAATTGGGATTCTGACACATATCAGTTTGATGAAGTTCTTACTGAAGTTGCCTCTCAGAAGCGTGTTTATGAAGTTGTAGCAAAGCCTGTTGTTGAGAGTGTATTGGAAGGGTACAATGGAACTGTGATGGCATATGGGCAGACTGGTACAGGAAAAACATTTACTCTTGGTCAACTAGGGGATGGAGATACTGCAGAACGGGGAATTATGGTGCGGGCAATGGAAGACATTCTAGCAGACATTTCTCCAGAGCATGATTCTGTAACAGTCTCATATCTGCAGCTTTATATGGAGACTGTGCAAGATCTCCTCACTCCTGGTAACTACAACATTCCTATTGTAGAAGATCCAAAGTCAGGGGATGTATCAGTGCCTGGTGCAACTGTTGTTGAAATAAGAGATCAACAGAGTTTTGTAGAATTATTGCGGACAGGGGAAGCACACCGATTTGCAGCCAACACTAAATTAAATACGGAATCTTCTCGAAGTCACGCAATCTTGATGGTAAATGTCAAAAGAGTGATGTATGGAAGGCAAGATAAAGAGTCAGCTCTGTCAAATGAGAATGGGAATGGTGTTAATCTACTCAAGGGTATTCGTGCTCCGGTGGTCAGAAAGAGCAAGTTGGTAGTGGTTGACTTGGCAGGTTCAGAGCGGATAGACAAATCAGGAAGTGAAGGGCATGCATTAGAGGAAGCCAAATCCATCAATTTATCTTTAAGTGCTCTTGGAAAGTGCATTAATGCTCTTGCAGAGAGCAGTTCACATGTACCTATTCGAGATTCAAAGCTGACAAGATTGCTTCGTGATTCATTTGGAGGAACTGCAAGGACTTCATTGGTTGTGACAGTTGGGCCTTCACCACGTCATCGAGGAGAGACAGCAAGTACCATAAGTTTTGGACAAAGGGCAATGAAAGTTGAGAACATGGTAAAGCTCAGGGAGGAATTCGATTACAAAAGCCTTTGTAGAAGATATGAGATACAGATCGAGAAGTTGATTGCTGAGAATGAAAGGAGTGCTAAGGCTTTGCAGAATGCTGAAGAAGAGCGGGATAGAATGGTCAGAGAAGCACAGGACTGTGCCATCGAGGCACAAAATAAACTTTCTAGTGCATTAGAGAAAATGGCTGCAGAAAAATCAAGTTATCAGAAAGAGTACATTGATGCATTGCAGAAGCTTGAAGTTCGAGAGAAACATGTACAACAACAAAAAGCAGCGATGGAGGCTAAGCTGAAGGATAAAAGTGCAGATTCTTGGAAAGAGGGTCAGGTTAATGGAACTGGTGAAGAACTTGCACAAGTGAAATGGTTGCTGCAGAAAGAAATCCAGATGAGGGAACACGCTGAAGAAGAGGTTAAAATACTCAAAAGCAAAATCATTCCAAGTGTTAATACGGAGATGTTGGAAAACGCTGAAGTTGTAAAGCTTACTAAAAGGTTGGAGGATGAAGTTAAGCAGAAGAGTAAATTAGAAGAGGAAATTAAGAGTTTGAAACACCAGCTATTACAATTGAGTTTTGAAGCCGATGAGACAAGGAGGGTTCTTGACAGAGGAGGATCGGGAAGGAACTCAACTAGCTCAGATACTGCAATGAACACATTTAAGACAAACCAAGTAAGAGATGCAGCAAATGGACAGAAAGCTACTATTGCCAAACTTTTTGAACAAGTTGGATTGCAAAAGATATTGTCATTGCTTGAATCAGAGGATGTTGATGTTCGGGTGCATGCAGTCAAAGTTGTTGCAAACCTGGCGGCTGAAGAGGCAAATCAAGAGAGGATTGTTGAGGCAGGCGGTCTTAATTCCCTGTTGATGCTTTTGAGGAGCTCAGAGGATGAGACCATACGAAGGGTATCTGCTGGGGCCATTGCAAATCTGGCTATGAATGAGACCAACCAGGAGCTTATCATGAATCATGGGGGCATTGGTTTGTTATCAAGGACAGCAGATGAGGCAGAAGACCCTCAAACTCTTCGAATGGTAGCTGGAGCAATCGCAAATTTATGTGGCAATGATAAATTGCAAATAAAACTTAGAAGTGAAGGTGGCATCAGGGCATTGCTGGGAATGGTTAGATGTGGTCATCCAGACGTCCTTGCACAGGTTGCTCGTGGAATTGCAAACTTTGCAAAGTGCGAGTCTCGAGCATCTACACAAGGAATTAAAACTGGAAGGTCTCTTCTAATCGATGATGGGACATTACCTTGGATTGTGCAAAATGCAAACAATGAGGCCTCTCCTATTAGACGCCATATTGAGCTTGCACTTTGCCACTTGGCACAACATGAAGTGAATGCTAAGGATCTAATTGCTGGAGGAGCATTGTGGGAGCTTGTTCGCATATCAAGAGATTGCTCACGTGAAGACATTCGAAATCTTGCCCATCGTACAATTGTTTCTAGTCCTATTTTCCAGACTGAGTTACGACGATCACATACAGAATTCTGAAGCGACTGATGTTTCTTACATTTCACCACTTGGTTGTTAACTCTGTATATTTGTTCTGATGGAGGAAAGCTTAGCTGATATTTTGTATCATTTCTATATTGGATTGGGCCATCTCACAAGTCTGTGGTCTGCATGTATAATGGTGATGTTTGTCTATAATGTCTTGAACAGGCTGAAGAATGGGATGTTTTGGAGTTTACCTTCAGAGAAAGTTTTGGAGGGTTTCATATTTATTGTGTTTCAAATTACTTGAGGAAATTGTAGTTTTGTCTCGAGGAGGATGATAGCTTCACTTAATGATTACAAGTTATCATAGAGACTTTAACGCTTCTTATGATGTAACATTTGTAACATTTCTGATCTGTATTGCTTCATCAATAAAGTGCTTAAAGTAATTTTATCTTTAGGTAC

Ace file of the UniGene sp_v3.0_unigene8231

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Armadillo repeat-containing kinesin-like protein 2 dbj\|BAD68466.1\| putative kinesin [Oryza sativa Japonica Group] gb\|EAY99569.1\| hypothetical protein OsI_21543 [Oryza sativa Indica Group]	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Sma3	Kinesin-II 85 kDa subunit, putative	-	-	1.895e-08	-

Source	Gene names
Sma3	ARK1; ARK2; ARK3; At1g01950; At1g12430; At3g54870; F22M8.8; F28P10.150; F5O11.15; GSVIVT00001024001; GSVIVT00018145001; GSVIVT00026364001; LOC_Os03g05820; LOC_Os06g04560; MRH2; OSTLU_44108; Os03g0152900; Os06g0137100; OsI_10058; OsI_21543; OsJ_09448; OsJ_

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	regulation of microtubule polymerization or depolymerization	GO:0031110	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	root hair cell tip growth	GO:0048768	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G12430.2	-	70%
RefSeq	Arabidopsis thaliana	NP_563908.1	armadillo repeat-containing kinesin-like protein 3 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002304445.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: your sequence is longer than subject: 942 - 509

Fln protein: MAFAGHRSSGGSNMGGKGTVRLERPPSINTLSSNRSNTGVVASSAPSSSVPPAGRPKSSSSSPSFSRRNSIGSPRNGKDDCGVPGRVRVAVRLRPRNPEELVADADFADCVELQPELQRLKLRRNNWDSDTYQFDEVLTEVASQKRVYEVVAKPVVESVLEGYNGTVMAYGQTGTGKTFTLGQLGDGDTAERGIMVRAMEDILADISPEHDSVTVSYLQLYMETVQDLLTPGNYNIPIVEDPKSGDVSVPGATVVEIRDQQSFVELLRTGEAHRFAANTKLNTESSRSHAILMVNVKRVMYGRQDKESALSNENGNGVNLLKGIRAPVVRKSKLVVVDLAGSERIDKSGSEGHALEEAKSINLSLSALGKCINALAESSSHVPIRDSKLTRLLRDSFGGTARTSLVVTVGPSPRHRGETASTISFGQRAMKVENMVKLREEFDYKSLCRRYEIQIEKLIAENERSAKALQNAEEERDRMVREAQDCAIEAQNKLSSALEKMAAEKSSYQKEYIDALQKLEVREKHVQQQKAAMEAKLKDKSADSWKEGQVNGTGEELAQVKWLLQKEIQMREHAEEEVKILKSKIIPSVNTEMLENAEVVKLTKRLEDEVKQKSKLEEEIKSLKHQLLQLSFEADETRRVLDRGGSGRNSTSSDTAMNTFKTNQVRDAANGQKATIAKLFEQVGLQKILSLLESEDVDVRVHAVKVVANLAAEEANQERIVEAGGLNSLLMLLRSSEDETIRRVSAGAIANLAMNETNQELIMNHGGIGLLSRTADEAEDPQTLRMVAGAIANLCGNDKLQIKLRSEGGIRALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGIKTGRSLLIDDGTLPWIVQNANNEASPIRRHIELALCHLAQHEVNAKDLIAGGALWELVRISRDCSREDIRNLAHRTIVSSPIFQTELRRSHTEF*

Protein Length: 943

Fln nts: ATGGGGGTATGTATGCATGTAAGATGGACGCAAGGGGATTTCATTTTGACCCTGGTTAAACGTCATAGTTGGTTGGCTAGACGTGACCATTCCCGTCACTCGGGAATGGTGGTTGCCGTCGGTTGTGGAATTCTGTAGAGGGAGAGAGAGTGAGAATTGCAGTCTGAATATCGCTCTGTAATTTGCATTTTGCGTTTCTTCTTCCATAGAGGAACCGAAGTTACTGCTGACATGCTCTCTTTTCCTCTGCATTCTTCCCTCATATTGCATTTGTGTTCCATTAAATTCGTTTCATTGCAGGAACTGACATTTTCATTTGCAAATCGAACCAGGCATCGCTCACTGCAACCCTAGCTTGCGCTGGGATCTTTTCTAGGGTTTCTTGCGCTTCTGTGGCGATTATTTTGCGTTGCAGAGGAATGTAGGATTGCAGGTTATGTAAGTTAGGCGTGGTGAAAAGAAGA_-_ATGGCGTTTGCAGGCCACAGAAGCAGCGGGGGTTCGAACATGGGAGGTAAGGGGACTGTGAGACTAGAGAGACCGCCGTCTATTAATACTTTGTCGTCGAATAGATCGAATACTGGTGTCGTGGCGTCCAGTGCTCCCTCGTCGTCGGTTCCGCCTGCAGGCCGGCCGAAGTCATCGTCTTCTTCGCCGTCCTTCTCTAGGCGCAACAGCATAGGGTCGCCTCGCAATGGCAAAGATGATTGTGGAGTGCCAGGACGAGTGAGAGTAGCTGTAAGACTGCGTCCTAGGAATCCAGAGGAGCTTGTTGCAGATGCAGATTTTGCAGATTGCGTGGAGCTTCAGCCAGAGCTCCAACGGTTGAAGTTGCGAAGGAACAATTGGGATTCTGACACATATCAGTTTGATGAAGTTCTTACTGAAGTTGCCTCTCAGAAGCGTGTTTATGAAGTTGTAGCAAAGCCTGTTGTTGAGAGTGTATTGGAAGGGTACAATGGAACTGTGATGGCATATGGGCAGACTGGTACAGGAAAAACATTTACTCTTGGTCAACTAGGGGATGGAGATACTGCAGAACGGGGAATTATGGTGCGGGCAATGGAAGACATTCTAGCAGACATTTCTCCAGAGCATGATTCTGTAACAGTCTCATATCTGCAGCTTTATATGGAGACTGTGCAAGATCTCCTCACTCCTGGTAACTACAACATTCCTATTGTAGAAGATCCAAAGTCAGGGGATGTATCAGTGCCTGGTGCAACTGTTGTTGAAATAAGAGATCAACAGAGTTTTGTAGAATTATTGCGGACAGGGGAAGCACACCGATTTGCAGCCAACACTAAATTAAATACGGAATCTTCTCGAAGTCACGCAATCTTGATGGTAAATGTCAAAAGAGTGATGTATGGAAGGCAAGATAAAGAGTCAGCTCTGTCAAATGAGAATGGGAATGGTGTTAATCTACTCAAGGGTATTCGTGCTCCGGTGGTCAGAAAGAGCAAGTTGGTAGTGGTTGACTTGGCAGGTTCAGAGCGGATAGACAAATCAGGAAGTGAAGGGCATGCATTAGAGGAAGCCAAATCCATCAATTTATCTTTAAGTGCTCTTGGAAAGTGCATTAATGCTCTTGCAGAGAGCAGTTCACATGTACCTATTCGAGATTCAAAGCTGACAAGATTGCTTCGTGATTCATTTGGAGGAACTGCAAGGACTTCATTGGTTGTGACAGTTGGGCCTTCACCACGTCATCGAGGAGAGACAGCAAGTACCATAAGTTTTGGACAAAGGGCAATGAAAGTTGAGAACATGGTAAAGCTCAGGGAGGAATTCGATTACAAAAGCCTTTGTAGAAGATATGAGATACAGATCGAGAAGTTGATTGCTGAGAATGAAAGGAGTGCTAAGGCTTTGCAGAATGCTGAAGAAGAGCGGGATAGAATGGTCAGAGAAGCACAGGACTGTGCCATCGAGGCACAAAATAAACTTTCTAGTGCATTAGAGAAAATGGCTGCAGAAAAATCAAGTTATCAGAAAGAGTACATTGATGCATTGCAGAAGCTTGAAGTTCGAGAGAAACATGTACAACAACAAAAAGCAGCGATGGAGGCTAAGCTGAAGGATAAAAGTGCAGATTCTTGGAAAGAGGGTCAGGTTAATGGAACTGGTGAAGAACTTGCACAAGTGAAATGGTTGCTGCAGAAAGAAATCCAGATGAGGGAACACGCTGAAGAAGAGGTTAAAATACTCAAAAGCAAAATCATTCCAAGTGTTAATACGGAGATGTTGGAAAACGCTGAAGTTGTAAAGCTTACTAAAAGGTTGGAGGATGAAGTTAAGCAGAAGAGTAAATTAGAAGAGGAAATTAAGAGTTTGAAACACCAGCTATTACAATTGAGTTTTGAAGCCGATGAGACAAGGAGGGTTCTTGACAGAGGAGGATCGGGAAGGAACTCAACTAGCTCAGATACTGCAATGAACACATTTAAGACAAACCAAGTAAGAGATGCAGCAAATGGACAGAAAGCTACTATTGCCAAACTTTTTGAACAAGTTGGATTGCAAAAGATATTGTCATTGCTTGAATCAGAGGATGTTGATGTTCGGGTGCATGCAGTCAAAGTTGTTGCAAACCTGGCGGCTGAAGAGGCAAATCAAGAGAGGATTGTTGAGGCAGGCGGTCTTAATTCCCTGTTGATGCTTTTGAGGAGCTCAGAGGATGAGACCATACGAAGGGTATCTGCTGGGGCCATTGCAAATCTGGCTATGAATGAGACCAACCAGGAGCTTATCATGAATCATGGGGGCATTGGTTTGTTATCAAGGACAGCAGATGAGGCAGAAGACCCTCAAACTCTTCGAATGGTAGCTGGAGCAATCGCAAATTTATGTGGCAATGATAAATTGCAAATAAAACTTAGAAGTGAAGGTGGCATCAGGGCATTGCTGGGAATGGTTAGATGTGGTCATCCAGACGTCCTTGCACAGGTTGCTCGTGGAATTGCAAACTTTGCAAAGTGCGAGTCTCGAGCATCTACACAAGGAATTAAAACTGGAAGGTCTCTTCTAATCGATGATGGGACATTACCTTGGATTGTGCAAAATGCAAACAATGAGGCCTCTCCTATTAGACGCCATATTGAGCTTGCACTTTGCCACTTGGCACAACATGAAGTGAATGCTAAGGATCTAATTGCTGGAGGAGCATTGTGGGAGCTTGTTCGCATATCAAGAGATTGCTCACGTGAAGACATTCGAAATCTTGCCCATCGTACAATTGTTTCTAGTCCTATTTTCCAGACTGAGTTACGACGATCACATACAGAATTCTGA___AGCGACTGATGTTTCTTACATTTCACCACTTGGTTGTTAACTCTGTATATTTGTTCTGATGGAGGAAAGCTTAGCTGATATTTTGTATCATTTCTATATTGGATTGGGCCATCTCACAAGTCTGTGGTCTGCATGTATAATGGTGATGTTTGTCTATAATGTCTTGAACAGGCTGAAGAATGGGATGTTTTGGAGTTTACCTTCAGAGAAAGTTTTGGAGGGTTTCATATTTATTGTGTTTCAAATTACTTGAGGAAATTGTAGTTTTGTCTCGAGGAGGATGATAGCTTCACTTAATGATTACAAGTTATCATAGAGACTTTAACGCTTCTTATGATGTAACATTTGTAACATTTCTGATCTGTATTGCTTCATCAATAAAGTGCTTAAAGTAATTTTATCTTTAGGTAC

Fln Alignment:

Contig8231___VRAMEDILADIS-----PEHDSVTVSYLQLYMETVQDLLTPGNYNIPIVEDPKSGDVSVPGATVVEIRDQQSFVELLRTGEAHRFAANTKLNTESSRSHAILMVNVKRVMYGRQDKESALSNENGNGVNLLKGIRAPVVRKSKLVVVDLAGSER-IDKSGSEGHALEEAKSINLSLSALGKCINALAESSSHVPIRDSKLTRLLRDSFGGTARTSLVVTVGPSPRHRGETASTISFGQRAMKVENMVKLREEFDYKSL
D5ACB2______________LRASEDILKLMNRPFYREQGFRLWLSFFEIYGGKLYDLL--GDRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKE----------------LKGGRTV----GKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNLKKDQSASSL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
2657	33		66		1.0
3213	66		33		0.997452
3218	66			33	0.997452
3219	66		33		0.997452
3221		33		66	0.997452
3226		66	33		0.997452
3228		66		33	0.997452
3229	66		33		0.997452
3232	33		66		0.997452
3233		33		66	0.997452
3234	66			33	0.997452
3294	66	33			1.0
3295	33		66		1.0
3296		66		33	1.0
3298	66		33		1.0
3299		66	33		1.0
3318	90		10		0.90298
3319		80		20	0.999996
3324		20		80	0.999996
3325	20		80		0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain