SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8230

Length: 1930 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8230

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycosyl hydrolases family 17 domain-containing protein [Arabidopsis thaliana] gb\|AEE31176.1\| glycosyl hydrolases family 17 domain-containing protein [Arabidopsis thaliana]	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Glucan endo-1,3-beta-glucosidase, putative	-	-	1.784e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	131L1.7; 134P10.1; 311G2.1; AT3G13560; AT4g18340; AT4g26830; At1g30080; At1g32860; At2g01630; At2g05790; At2g16230; At2g26600; At2g26600/T9J22.27; At2g27500; At2g27500/F10A12.18; At3g07320; At3g07320/T1B9_1; At3g13560; At4g18340; At4g26830; At4g29360; At4

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	plasmodesma	GO:0009506	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell communication	GO:0007154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30080.1	Glycosyl hydrolase superfamily protein chr1:10551231-10553167 REVERSE LENGTH=408	53%
RefSeq	Arabidopsis thaliana	NP_174300.2	glycosyl hydrolases family 17 domain-containing protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002306003.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRW3

Fln msg: your sequence is longer than subject: 447 - 405

Fln protein: MTIASARKSSLPFTSFIDFRCDTSALTETRALPLRCVQCRRLMGFGISCRMAMVFIVWALMAFLSVGLEDSKALAITGSTVGINYGQIADNLPSPAKVAELLKALKVTKVKLYDWNPAILKAFANSDVELVVGIGNPFVAGLVDTQAAFSWVTQNIQPYISSTKVTGLSVGNEVYTGDDAALKANLVPAMRSIHTALVSLGLDSAIKISSAHSLSVLTSSYPPSAGAFDPAIMQLLREHLDFLAVTGAPFWINAYPFFAYKDNAGKISLDYALFKPSAGSDDPNTHLHYDNMLYAMVDAVYSALGAMGYGNLEVRISETGWPSKGDADELGASLQNAATYNRNLLQRLLKNQGTPMKPNSALQAYIFALFNEDLKNGPTSERNYGLFKPDETMVYNIGLEGGLTVEFSAYTSSAQRRYNGAALSIALSLLLSGLCTVYFVLPRLDF*

Protein Length: 448

Fln nts: ATGGGAGGAAGGAAGGTAGCGAGTGGGCGACAGTGAGGGAGGGAAAGGCAAGAAAGGGATCGCGGAGGGCGAACGAAGGCGCTCTGAGATATATTTTAAGTTCAAAGGAAGGGAAGAAGCATCA_-_ATGACAATAGCATCTGCAAGAAAATCTTCCCTTCCATTCACTTCATTTATTGATTTTCGATGTGATACGAGTGCTCTTACAGAAACCAGAGCGCTGCCGTTACGTTGCGTTCAGTGCCGCCGGCTTATGGGATTTGGGATTAGTTGCAGAATGGCTATGGTGTTCATTGTCTGGGCTCTCATGGCGTTTCTATCAGTTGGGTTGGAGGATTCGAAGGCACTGGCCATTACTGGCAGCACAGTGGGGATTAATTACGGACAAATAGCCGACAATTTGCCCTCGCCGGCTAAAGTAGCAGAGCTTCTGAAGGCCTTAAAGGTAACCAAAGTGAAGCTCTATGACTGGAACCCTGCGATCCTGAAGGCCTTTGCCAATTCGGATGTTGAGCTGGTAGTGGGCATCGGCAACCCGTTTGTGGCGGGACTCGTGGACACGCAGGCGGCCTTTTCTTGGGTAACGCAGAACATCCAGCCTTATATTAGCAGTACCAAAGTCACGGGGCTCTCGGTGGGCAACGAGGTCTACACGGGCGACGATGCTGCCCTCAAGGCGAACCTGGTGCCTGCAATGCGGAGCATCCATACGGCCCTGGTGAGCCTCGGTTTGGACTCTGCAATCAAAATCTCGTCGGCCCATTCGCTCTCGGTGCTCACCAGCAGTTACCCGCCCTCCGCCGGTGCCTTCGATCCTGCTATTATGCAGCTCCTGAGGGAGCACCTGGACTTCCTGGCGGTCACCGGAGCTCCGTTCTGGATCAACGCGTACCCTTTTTTTGCCTACAAGGACAACGCTGGGAAAATCTCTCTGGACTACGCGCTGTTCAAACCCAGCGCCGGAAGTGATGACCCCAACACGCATCTGCACTACGATAACATGCTGTACGCCATGGTGGACGCGGTTTACTCTGCTCTCGGCGCCATGGGGTATGGGAATCTGGAGGTCAGAATTTCAGAGACCGGGTGGCCTTCCAAAGGGGACGCCGATGAATTAGGGGCCTCCCTTCAGAACGCCGCGACGTATAACAGGAACCTGCTCCAGCGCCTTTTGAAGAATCAGGGCACTCCCATGAAGCCCAACTCTGCTCTCCAGGCTTATATTTTCGCCCTCTTCAATGAAGACCTGAAGAACGGCCCTACATCTGAGAGAAATTATGGGCTCTTTAAGCCCGATGAAACCATGGTCTATAATATCGGTCTTGAAGGAGGACTCACAGTTGAATTCTCCGCTTACACTTCTTCAGCTCAGAGAAGATATAATGGCGCTGCACTGTCCATCGCCCTCTCGCTCCTGCTTTCAGGCCTTTGCACAGTTTATTTCGTTCTACCTCGATTAGATTTCTAG___CTGTATATTCAATGTCATTCTGCATTTATTGCTTGCAATCCTGGGCAAGCAGTGAATTGAATCCAATGATCAGCCATTGAAGCAATATGCAGATGATCTCAATCTTAACACACACAGAGGCCGTGGACTATAAAGTCAGATGGACGACCCTTCTCTTTTAACATGACATTGCCCATTCGATTATGCGCAGCTCTTGTAATGGTTATGGCCGCTCTGCTCTTGAACAAGGCGTGGCAATTGAGGATTCAATTCAAAATAATATTTCATGTTGCCTGCGGCCGAATAACAGCAGCGTGGGATATCTCTGTTACAAGCTCTGATTTAGGCATTATAAACAAATTACGATGATTTGTACCATACATGAATACCTAACCAAAAACCTGTTAGTCCATGTTTTCCTACATGTATTTTATTACAAAAATTGATTAAGTTGATAAAAAATCTGGCTTGCATGATTTCTTAAAA

Fln Alignment:

Contig8230___VWALMAFLSVGLEDSKALAITGSTVGINYGQIADNLPSPXXXXXXXXXXXXXXXXXYDWNPAILKAFANSDVELVVGIGNPFVAGLVDTQAAFSWVTQNIQPYISSTKVTGLSVGNEVYTGDDAALKANLVPAMRSIHTALVSLGLDSAIKIXXXXXXXXXXXXYPPSAGAFDPAIMQLLREHLDFLAVTGAPFWINAYPFFAYKDNAGKISLDYALFKPSAGSDDPNTHLHYDNMLYAMVDAVYSALGAMGYGNLEVRISETGWPSKGDADELGASLQNAATYXXXXXXXXXXXXGTPMKPNSALQAYIFALFNEDLKNGPTSERNYGLFKPDETMVYNIGLEGGLT
B8LRW3______________LWALVLLSGLALSNS-ASNTSASTTGINYGQVADNLPSPEVVVGLLQANNINKVKLFSANETVLKAFANTGIELIVGIGNENVGNMTDPTKATEWVNENIRTYLPATKIIGIAVGNEVYTGTDTQLMANLVPAMKNIHSALVSIGADMNIQITTPHSLAVLGNSYPPSAGSFVSDLNSLMKPLLDFLSQIGSPFFINIYPYFAYKSNPSQVSLDYVLFQPNAGVIDPNNNIRYNNMLYAQVDAVYSALSALGYANLEVTVSETGWPSMGDASEAGATLQNAQTYNGNLLQLLAQNQGTPLRPKLVLQAYLFALFNEDMKTGPTSERNFGLFKPDGTAVYNLGLTGTLS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
709	66		33		0.997452
710		66	33		0.997452
946		50		50	1.0
956	50		50		1.0
958		50	50		1.0
1035			80	20	0.995493
1129		50	50		1.0
1137		50		50	1.0
1270	66	33			0.997452
1340			20	80	0.995493
1341			20	80	0.995493
1411		75	25		1.0
1433		87		12	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain