SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8219

Length: 2442 nt

UniGene Fasta

>sp_v3.0_unigene8219
ATGGGGGTCGTTTGAACGAAATCAATGCAGAGAATGACGCTGTTGCCATGAAGAGACTGATTTCTAGTCCATCCAAAAGTCCTCCTCTTGTTTTTTTTGAAGCGGCCGTCGGCAAATACAAATATATTGAGCCACTGTTTTCTGAAGCCGTCGTTTGAACGAAATCAACACAGAGAATGACGCTGTTGCCATGAAGAGACTGCCGTGAAGCAATGCTGCGTGAGTCCTCCTGCACGCAGAGAGAAAGGGAAAGCCGCAGAAGAATAAAGCAGCAGAAGAATTTGTCTCGGTCTGTTTGAAGTCAGACGGAAAGAAAGTCCGAGCTGCTGCCGCCTGCCGCTGCCGCTGGAGAGTGAGGGCCATTCAAGAAGGGAATCGAGGCATTGACTTTCTTTTTAGCCGCAAAGAAGGGCCCTCGAAACTGCGTGAAAAAAAGAACGCTGTTTATGAGCCCGCCAGCCGAGTTGGAGGAACCCACACTGCCAGAAACCCCAGCCGGACGAGCAAGATCCTCCCGCCATTGTGAAGAGGAAGAGAGCTCTTGTTAAGAGCCGAGCCTGACAGAGAACGAGCTGTTTCCGCTTGCTGGAGCTGTCCGCTGCAGAGCCGTCAGCCGAGAGTGACTGCCTGGTGGAAGATTTAAAAAAAATAATTTTTTAGAGCCTTAGAGCCGGCTTGGAGCAGAGTCGAGTTTTTTGTTTACAGAACCGGTTGGATACACAGCCAAGTCACCGGTTTTTAATGGCGAGTCTTAGAACTGCAGGGTATCCTTCAGCTATTCATTTGCAGGAGACCAAACAACAAATTGGGTTGGCAGTCCAGAACTCAACTTACCTGCAAACCTCTGCCACAAAAAAGAATAGGCTTTGTTTTGTATCATACAAACACAATATTTTAGGAGACAGGACAACTGGCCTATACTACATGGACTGCCGGGCATCAGTTTCACCTGCAACCCCTGTGACAGATGAAAAACCAATGACTGGAGATTCATTCATTCGTCCCCACTTAAGGGAGTTGGCTGCTTACCAACCTATATTGCCTTTTGAGGTATTGTCTGCGCGGCTTGGAAGAAAACCTCAAGACATAATTAAGCTGGATGCAAATGAAAATCCATATGGCCCACCACCAGAGGTTATGGAAGCATTGGGAAATATTGAGTTTCCTTATATATATCCTGATCCAGCGAGTCGGCGCTTACGAGCTGCACTTGCTGAGGATTCAGGTCTTGATGCATCTTATTTACTTGCAGGATGTGGAGCAGATGAACTTATCGATCTCATCATGCGGTGTGTGCTTGATCCTGGTGACAAGATTATTGATTGCCCACCCACATTTACTATGTATGAGTTTGATGCCTGTGTGAATGGGGCAACTGTGATAAAGGTTCCAAGACTAGCTTATTTCCATTTGGATGTTTCTGGTATTATTGAAACTGTGAAGAAAGAGAAGCCAAAATGCATCTTCTTAACTTCTCCAAACAATCCAGATGGCAGCATTATTAATGATGAGGACCTTCTGGCGATTCTTCGCCTACCAATCTTGGTCGTGCTGGATGAAGCATACATTGAATTTTCAGGAAAAGAATCCAGGATGGCCTGGGTGAAAGAACATGAGAATCTGATTGTTTTGCGGACATTCAGTAAAAGAGCCGGTTTAGCCGGCCTTCGAGTAGGATATGGAGCTTTTCCATTGAGCATTATTGAATACCTATGGAGAGCAAAGCAACCATACAATGTTTCTGTTGCAGCAGAAGTTGCTGCCTGTGCGGCACTTAAAAATCCAGCTTATTTACAGAAAGTGAAAGAAGCACTGATGAATGAAAAGGGGAGACTATATTCCTTGCTGCAAGAAGTGCCGTTTTTGGAACCTTATCCTAGCTACTCAAATTTCATTCTTTGTGCAGTCACTCATGGAAAGGATGCCAAAAAAGTAAAGGAGGATCTTTCTCAAGCAGGAGTCATGATACGCCATTACAATAACAAAGAACTGAAGGGGTATGTTCGTATTTCTGTGGGGAAGCCAGAACACACGGATGCTTTAATGAGAGCTCTAAGACTAATAGCTTGATCAGCATCCACTACATTTGACAGAGCAGATTTTGGATCAATCATTCAAAGTAATTGACCGAGAGATCTCTTCAAAATATCTTCTTGTTTTTTGATTTCTGTGAAAGTTAATCTTATTATCAATAGCATGCCTTACAATTTTTTGAAACACTGTACAATATGTTTGGTGTTGGTTTTTAGAGTACATATGCATGAGAAACGACACAAGATGTAGGGAATAATCTTGCTTCTATTTGATGGTATTTAATTGTAGAAGATATATATTTTATGATACAAAATTGCTTCAAAAAGAGATTGCCAAAGGTAAGGATAGATCTTCAGCATTTCCAAACCATTTTTCCCTATCCTAATATAACGTTTGGCTTTTCTTTGC

Ace file of the UniGene sp_v3.0_unigene8219

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative histidinol-phosphate transaminase [Oryza sativa Japonica Group] gb\|EEE57663.1\| hypothetical protein OsJ_08102 [Oryza sativa Japonica Group]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	histidinol-phosphate transaminase activity	GO:0004400	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	histidine biosynthetic process	GO:0000105	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Histidinol-phosphate aminotransferase family	IPR005861	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G10330.1	EMB2196, HPA1, HISN6A, ATHPA1 histidinol phosphate aminotransferase 1 chr5:3248027-3249858 REVERSE LENGTH=417	77%
RefSeq	Arabidopsis thaliana	NP_001154467.1	Histidinol-phosphate aminotransferase [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002327236.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX10

Fln msg:

Fln protein: MASLRTAGYPSAIHLQETKQQIGLAVQNSTYLQTSATKKNRLCFVSYKHNILGDRTTGLYYMDCRASVSPATPVTDEKPMTGDSFIRPHLRELAAYQPILPFEVLSARLGRKPQDIIKLDANENPYGPPPEVMEALGNIEFPYIYPDPASRRLRAALAEDSGLDASYLLAGCGADELIDLIMRCVLDPGDKIIDCPPTFTMYEFDACVNGATVIKVPRLAYFHLDVSGIIETVKKEKPKCIFLTSPNNPDGSIINDEDLLAILRLPILVVLDEAYIEFSGKESRMAWVKEHENLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALKNPAYLQKVKEALMNEKGRLYSLLQEVPFLEPYPSYSNFILCAVTHGKDAKKVKEDLSQAGVMIRHYNNKELKGYVRISVGKPEHTDALMRALRLIA*

Protein Length: 444

Fln nts: ATGGGGGTCGTTTGAACGAAATCAATGCAGAGAATGACGCTGTTGCCATGAAGAGACTGATTTCTAGTCCATCCAAAAGTCCTCCTCTTGTTTTTTTTGAAGCGGCCGTCGGCAAATACAAATATATTGAGCCACTGTTTTCTGAAGCCGTCGTTTGAACGAAATCAACACAGAGAATGACGCTGTTGCCATGAAGAGACTGCCGTGAAGCAATGCTGCGTGAGTCCTCCTGCACGCAGAGAGAAAGGGAAAGCCGCAGAAGAATAAAGCAGCAGAAGAATTTGTCTCGGTCTGTTTGAAGTCAGACGGAAAGAAAGTCCGAGCTGCTGCCGCCTGCCGCTGCCGCTGGAGAGTGAGGGCCATTCAAGAAGGGAATCGAGGCATTGACTTTCTTTTTAGCCGCAAAGAAGGGCCCTCGAAACTGCGTGAAAAAAAGAACGCTGTTTATGAGCCCGCCAGCCGAGTTGGAGGAACCCACACTGCCAGAAACCCCAGCCGGACGAGCAAGATCCTCCCGCCATTGTGAAGAGGAAGAGAGCTCTTGTTAAGAGCCGAGCCTGACAGAGAACGAGCTGTTTCCGCTTGCTGGAGCTGTCCGCTGCAGAGCCGTCAGCCGAGAGTGACTGCCTGGTGGAAGATTTAAAAAAAATAATTTTTTAGAGCCTTAGAGCCGGCTTGGAGCAGAGTCGAGTTTTTTGTTTACAGAACCGGTTGGATACACAGCCAAGTCACCGGTTTTTA_-_ATGGCGAGTCTTAGAACTGCAGGGTATCCTTCAGCTATTCATTTGCAGGAGACCAAACAACAAATTGGGTTGGCAGTCCAGAACTCAACTTACCTGCAAACCTCTGCCACAAAAAAGAATAGGCTTTGTTTTGTATCATACAAACACAATATTTTAGGAGACAGGACAACTGGCCTATACTACATGGACTGCCGGGCATCAGTTTCACCTGCAACCCCTGTGACAGATGAAAAACCAATGACTGGAGATTCATTCATTCGTCCCCACTTAAGGGAGTTGGCTGCTTACCAACCTATATTGCCTTTTGAGGTATTGTCTGCGCGGCTTGGAAGAAAACCTCAAGACATAATTAAGCTGGATGCAAATGAAAATCCATATGGCCCACCACCAGAGGTTATGGAAGCATTGGGAAATATTGAGTTTCCTTATATATATCCTGATCCAGCGAGTCGGCGCTTACGAGCTGCACTTGCTGAGGATTCAGGTCTTGATGCATCTTATTTACTTGCAGGATGTGGAGCAGATGAACTTATCGATCTCATCATGCGGTGTGTGCTTGATCCTGGTGACAAGATTATTGATTGCCCACCCACATTTACTATGTATGAGTTTGATGCCTGTGTGAATGGGGCAACTGTGATAAAGGTTCCAAGACTAGCTTATTTCCATTTGGATGTTTCTGGTATTATTGAAACTGTGAAGAAAGAGAAGCCAAAATGCATCTTCTTAACTTCTCCAAACAATCCAGATGGCAGCATTATTAATGATGAGGACCTTCTGGCGATTCTTCGCCTACCAATCTTGGTCGTGCTGGATGAAGCATACATTGAATTTTCAGGAAAAGAATCCAGGATGGCCTGGGTGAAAGAACATGAGAATCTGATTGTTTTGCGGACATTCAGTAAAAGAGCCGGTTTAGCCGGCCTTCGAGTAGGATATGGAGCTTTTCCATTGAGCATTATTGAATACCTATGGAGAGCAAAGCAACCATACAATGTTTCTGTTGCAGCAGAAGTTGCTGCCTGTGCGGCACTTAAAAATCCAGCTTATTTACAGAAAGTGAAAGAAGCACTGATGAATGAAAAGGGGAGACTATATTCCTTGCTGCAAGAAGTGCCGTTTTTGGAACCTTATCCTAGCTACTCAAATTTCATTCTTTGTGCAGTCACTCATGGAAAGGATGCCAAAAAAGTAAAGGAGGATCTTTCTCAAGCAGGAGTCATGATACGCCATTACAATAACAAAGAACTGAAGGGGTATGTTCGTATTTCTGTGGGGAAGCCAGAACACACGGATGCTTTAATGAGAGCTCTAAGACTAATAGCTTGA___TCAGCATCCACTACATTTGACAGAGCAGATTTTGGATCAATCATTCAAAGTAATTGACCGAGAGATCTCTTCAAAATATCTTCTTGTTTTTTGATTTCTGTGAAAGTTAATCTTATTATCAATAGCATGCCTTACAATTTTTTGAAACACTGTACAATATGTTTGGTGTTGGTTTTTAGAGTACATATGCATGAGAAACGACACAAGATGTAGGGAATAATCTTGCTTCTATTTGATGGTATTTAATTGTAGAAGATATATATTTTATGATACAAAATTGCTTCAAAAAGAGATTGCCAAAGGTAAGGATAGATCTTCAGCATTTCCAAACCATTTTTCCCTATCCTAATATAACGTTTGGCTTTTCTTTGC

Fln Alignment:

Contig8219___MASLRTAGYPSAIHLQETKQQIGLAVQNSTYLQTSATKKNRLCFVSYKHNILGDRTTGLYYMDCRASVSPATPVTDEKPMTGDSFIRPHLRELAAYQPILPFEVLSARLGRKPQDIIKLDANENPYGPPPEVMEALGNIEFPYIYPDPASRRLRAALAEDSGLDASYLLAGCGADELIDLIMRCVLDPGDKIIDCPPTFTMYEFDACVNGATVIKVPRLAYFHLDVSGIIETVKKEKPKCIFLTSPNNPDGSIINDEDLLAILRLPILVVLDEAYIEFSGKESRMAWVKEHENLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNXXXXXXXXXXXXLKNPAYLQKVKEALMNEKGRLYSLLQEVPFLEPYPSYSNFILCAVTHGKDAKKVKEDLSQAGVMIRHYNNKELKGYVRISVGKPEHTDALMRALRLIA
A9NX10______________MASLRTAGYPSAIYLQETKQQIGLAAQNSTYLQTPATNKSRLFCVSNKHSIFRHRTTSLYYMNCRASISPAAPVTDEKPMTGDSFIRPHLRELAAYQPILPFEVLSARLGRKPQDIIKLDANENPYGPPPEVMEALGNMEFPYIYPDPESRRLRAALAEDSGLDASYLLAGCGADELIDLIMRCVLDPGDKIIDCPPTFTMYEFDAGVNGATVIKVPRLSYFSLDVSGIIETVKKEKPKCIFLTSPNNPDGSIINDEDLLAILHLPILVVLDEAYIEFSGKESRMAWVKKHENLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEIAACAALKNPTYLQKVKEALVNEKERLYSLLQEVPFLEPYPSYSNFILCAVTNGKDAKKVKEDLSQAGVMIRHYNKKELMGYIRISVGKPEHTDALMKALRLIS

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
508	50		50		1.0
526		50		50	1.0
533	85			14	0.993533
554	88	11			0.923564
557		55		44	1.0
560		33	66		1.0
562		55	44		1.0
599		33		66	1.0
980	33	66			0.997452
983	66		33		0.997452
988			33	66	0.997452
989			66	33	0.997452
1156	80		20		0.995493
1285		11		88	0.923564
1300	11		88		0.923564
1583			87	12	0.992554
1584			87	12	0.992554
1590	85		14		0.993533
1619			85	14	0.993533
1629	14			85	0.993533
1657		28		71	1.0
1909	76			23	1.0
1929	13	86			0.999973
1932	85			14	0.999981
1933	85			14	0.999981
1988	90		10		0.90298
2087	90	10			0.90298
2102			44	55	1.0
2150	40		60		1.0
2213		50		50	1.0
2294	60		40		1.0
2295		10		90	0.90298
2308	11			88	0.923564
2309		11	88		0.923564
2312			88	11	0.923564
2313	25		75		1.0
2326		12	87		0.992554
2328	87			12	0.992554
2329			87	12	0.992554
2357		20		80	0.995493
2360	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain