SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8212

Length: 1545 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8212

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH:ubiquinone oxidoreductase subunit-17.2 [Arabidopsis thaliana] gb\|AAL86298.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91689.1\| unknown protein [Arabidopsis thaliana] gb\|AEE85277.1\| NADH:ubiquinone oxidoreductase subunit-17.2 [Arabidopsis thaliana	-	-	8.99998e-41	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%

Source	Gene names
Sma3	At4g26965; GSVIVT00027317001; Os09g0500200; OsI_31916; OsJ_29900; PHYPADRAFT_94062; POPTRDRAFT_640541; POPTRDRAFT_757458; RCOM_0082530;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	IPR007763	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002304472.1	predicted protein [Populus trichocarpa]	0.0	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9G9

Fln msg:

Fln protein: MAKLVSRIMGWLRPSTLAGIDKSGNRYFTRTEDMDGALKERRSVKFKSDSDPTTLPVEWISWLTGRRKEAPTPQEMLELEAQRERVKMNAAILQKEEEKRRFRAKSLQQSMDSGDVGPPNLARFIQDFSDASIAHDEGGDAEKISHGTHENADRVSEPVGTGSSFRPGTWQPPESSEPTGTGQSFQPGTWQPPK*

Protein Length: 196

Fln nts: ATGGGAACGGGAAACGGCATTGGGCAGTTTTTGAAGAGGCAACCATGTCCTCAAGGTATGATCCGTGAAACCACAGAAACTTTGGATTTTTCGATCTCAGGGAGCACCTGGCAAATTCAATACCCTCCAGTTCTATCATTAATCACCCGTGGGACCTTTCATACTCGCAAATATTCGATTCTCGCCATTTCTTAATGCACCTCTGAAAAGGCAACAATATCATCAAGAGAGTAGAAGAAGCC_-_ATGGCGAAGCTGGTATCAAGGATCATGGGCTGGTTACGCCCCAGCACCCTGGCTGGGATTGACAAGTCGGGCAACCGCTACTTCACCAGAACTGAGGATATGGATGGAGCTTTAAAAGAACGGAGGTCGGTAAAGTTTAAAAGTGATTCAGACCCCACTACACTACCAGTCGAGTGGATAAGCTGGTTAACAGGACGGAGGAAAGAAGCTCCAACTCCACAGGAAATGCTGGAGTTAGAAGCACAACGTGAGCGTGTCAAAATGAATGCTGCAATTCTGCAGAAAGAAGAGGAGAAAAGGAGATTCAGAGCAAAGAGTCTTCAGCAGAGCATGGACAGTGGTGATGTTGGTCCTCCAAACTTGGCAAGGTTCATTCAGGATTTCAGTGATGCTTCTATTGCACATGATGAAGGTGGAGATGCGGAGAAAATATCACACGGAACACACGAAAATGCTGACAGGGTTTCAGAACCAGTGGGGACAGGAAGTTCTTTTCGGCCTGGAACCTGGCAGCCCCCCGAGTCATCGGAGCCAACAGGGACAGGGCAGTCTTTTCAGCCAGGAACTTGGCAACCGCCAAAGTGA___GGTGTTACGATGACCCTGCTTCAAACTTATCTAGGGTCATTTATTTGAATATTTTGGCATTTTTGTGTGGGAGAGGTAGATATTTTCTCGAAAATGTACCCTTCTAATTTCATTTATTTATTCACCTTGAAAATTCAATTATAATATTGGATGTAGCCCTAACTTTCCTGGTCCATTAACAAGGAAAGGTGAGCTGTAAGAAACTTTGAAATAGAAAGCCATCTACACACAAGCACAATTTCAAGGTCTTTTTCTCGAGGCTCATCAATATTACAGAAGGGGTCAAGTATGACTGATTTTTCATGGAAAATAACAATGACTCTTTTCACAGTTGATCATTTTTGGGAATCTCGTGCACTAGAGGATACGAAAGGAACAAGGGTTGGAAGAACGCATACGAATATGGATAAGGGTCTATTATTAAAGATGGAAGGGGATGAACAAAACAAGGGAAGCAAACCTAAGCTCAGTGTAATCGGCTGGCCATGACAGTAGAAATTTTGTAATTCAATCTAAAAGGGACAATAGGGACAATTTTAAAGTATTAAAATGGATAGTATCGCATAATTTTAATATTATTCAAAGCAAGCCTTGTCAATAGAAAAATCTATAGAAAGCATTGAAGTTTGGAGAATTAGATCTATTTCTTGTTTTAGCATTGAATCTGAAATATATATTGCACTGGTATATGTTTGACCTCTGTTCAATCCAATTCACT

Fln Alignment:

Contig8212___MAKLVSRIMGWLRPSTLAGIDKSGNRYFTRTEDMDGALKERRSVKFKSDSDPTTLPVEWISWLTGRRKEAPTPQEMLELEAQRERVKMNAAILQKEEEKRRFRAKSLQQSMDSGDVGPPNLARFIQDFSDASIAHDEGGDAEKISHGTHENADRVSEPVGTGSSFRPGTWQPPESSEPTGTGQSFQPGTWQPPK
D5A9G9______________MAKLVSRIVGWFRPNTMVGIDKSGNRYFTRTEDLDGFLKERRSVKFKSDSDPTTLPVEWISWLTGRRKEAPTPQEMLELEAQRERVKMNASILQKEEEKRRFRAKSLQQSMDSGDVGPPDLARFIQDFSDASIAHGEGGDVEKVSHETHENADRVSEPTGTGSSFRPGTWQPPESSEPTGTGQSFQPGTWQPPK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
153	33		66		0.997452
184	33		66		0.997452
185		66		33	0.997452
312	20		60	20	0.99255
463		85	14		0.993533
503	85		14		0.993533
537		16	83		0.994512
682	10		90		0.90298
705	14		85		0.993533
869		25		75	0.996473
1270		28		71	1.0
1283	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain