SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8208

Length: 884 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene8208 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Probable LRR receptor-like serine/threonine-protein kinase At2g16250; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Sma3	Lrr receptor protein kinase, putative	-	-	5.614e-08	-

Source	Gene names
Sma3	AT2G16250; At2g16250; GSVIVT00014610001; GSVIVT00036382001; LOC_Os03g51440; LOC_Os03g56250; LRR-RLK; OJ1499_D04.8; OSJNBb0094O03.13; Os03g0724300; Os03g0773300; Os07g0134600; OsI_13348; OsI_13696; OsI_24799; OsJ_12407; OsJ_12759; OsJ_23000; P0507H12.25; P

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G16250.1	Leucine-rich repeat protein kinase family protein chr2:7039682-7042933 REVERSE LENGTH=915	3.0e-29	45%
RefSeq	Arabidopsis thaliana	NP_179220.2	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana]	4.0e-29	45%
RefSeq	Populus trichocarpa	XP_002306107.1	predicted protein [Populus trichocarpa]	4.0e-34	49%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
127		80		20	0.999996
178	87		12		0.992554
180		12		87	0.992554
195	87		12		0.992554
258		11		88	0.923564
264	88			11	0.923564
266		12		87	0.992554
267	87	12			0.992554
268	87	12			0.992554
270		87		12	0.992554
279			85	14	0.993533
281	14			85	0.993533
284			14	85	0.993533
285	14			85	0.993533
287	14			85	0.993533
288		85	14		0.993533
290		28		71	1.0
291	85	14			0.993533
294	71		14	14	0.984337
295	83		16		0.994512
299	16			83	0.994512
301			16	83	0.994512
302	16	83			0.994512
304	83		16		0.994512
376		50		50	1.0
377		50	50		1.0
395	20	80			0.995493
396	20			80	0.995493
398		80	20		0.995493
687		33	66		0.997452
736		33		66	0.997452
759			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain