SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8194

Length: 1687 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8194

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR-NBS-LRR class disease resistance protein n=4 Tax=Arabidopsis thaliana RepID=F4I270_ARATH	-	-	5.0e-25	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABU5

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 461 - 425

Fln protein: MTHVRVHDVIRGLAIHIAEMEENFSCRTGKGLMVLNQDECSGRATRILLRGNQLSSLPESWRDPKMCALLMAGNQLTEIPRKVIGSMISLKVLDLNDTSVQSLPESVGCLKQLACLRLVRVPIKRLPASLTALPNLQILDLSESSITELPSDIDRLRCLMFLNMYGCYDLQCLPSSFSGLTSLQWLDMRYCSNVWATRDKKRRWKKVASIADFSSLTQLKLLRVQNNREIISEGILGSMVQMETLELQLTSMTELPSDIFSISKLRRFSLECSHVVKMESKFSEFHNLMHLQLWNCSTLEDLPDLHKLRSLKRLDIFNCVKLRKFPKEFGEIGAFSLLEMFSLVNLEELEELPLIEEGAMPMFKIFTMMQCEVLHTLPESYLNLKTLQKVRVFSCSMVLENLQRIKLLDSKVEVITMSTRDTKEIIQKYNQVGSSIEGRSYGESWSNELWLFLQDLYRSL*

Protein Length: 462

Fln nts: CTGCAATTGTGCTTTCTCTACTTAGCTGCTGCCTTCTTAGAGGACGAAATTGTTAACGTCGAGGTTGAGTTGATTCCGTTGTTGCTGGGAGAAGGTCTGCTTGCAAGAAAGAAGCTGCAAGATCAGCCTGGCCACGAAGACCCATTCAAGATCGGAAGAATTTATGTGAAGGATTTAGCAGATCGGTGTTTGGTGGAACCCATATTCAGAGACATCGATGGGCGC_-_ATGACCCATGTGAGGGTGCATGACGTCATCCGTGGTTTGGCCATACACATTGCTGAGATGGAAGAAAACTTCTCCTGCCGCACAGGAAAGGGTTTGATGGTGCTGAATCAAGATGAGTGTTCAGGCCGCGCCACTCGGATTTTGTTGAGGGGAAACCAATTGAGTTCGCTTCCTGAATCATGGAGAGATCCAAAAATGTGTGCACTGTTGATGGCGGGGAACCAATTAACAGAGATTCCAAGAAAGGTGATTGGGAGTATGATTTCTCTCAAGGTTCTTGATTTGAATGACACGTCAGTACAGTCATTGCCAGAGAGTGTGGGGTGTTTAAAACAACTAGCATGCCTCCGATTAGTACGCGTGCCCATCAAAAGGCTACCTGCATCTCTCACAGCTCTCCCAAACCTCCAAATTCTTGACCTTTCTGAGTCCAGCATCACAGAATTACCATCTGACATCGACAGGTTGAGATGCCTGATGTTTCTGAACATGTATGGATGTTATGATTTGCAATGTTTGCCTAGTAGCTTCTCAGGACTTACCTCTTTGCAGTGGTTGGACATGAGATACTGCAGTAACGTGTGGGCAACACGTGATAAAAAGAGGAGATGGAAAAAAGTGGCTTCCATTGCGGATTTTAGTAGTCTAACACAACTAAAACTGTTACGTGTACAAAACAACAGAGAAATCATTAGTGAAGGCATACTGGGGAGCATGGTTCAAATGGAGACACTCGAGTTGCAGCTGACATCGATGACAGAGTTACCTTCCGACATATTCAGCATCTCAAAGTTGAGAAGGTTCAGTTTAGAGTGCTCCCACGTGGTTAAGATGGAAAGTAAGTTTTCGGAATTTCACAATTTGATGCATCTTCAATTGTGGAATTGTTCTACGTTGGAAGACCTTCCGGATTTGCACAAGCTCAGGAGTTTGAAGAGATTAGATATTTTTAATTGCGTAAAGTTAAGGAAATTTCCTAAAGAGTTTGGTGAGATTGGAGCATTTTCTTTATTAGAAATGTTTTCATTAGTTAATTTGGAGGAATTAGAGGAGTTACCATTAATAGAAGAGGGGGCAATGCCTATGTTTAAAATATTTACTATGATGCAATGTGAAGTATTACACACATTGCCAGAAAGTTATTTGAATCTCAAAACACTCCAAAAAGTAAGGGTGTTTAGTTGTTCAATGGTATTAGAGAATCTACAAAGAATCAAGTTACTAGATTCAAAAGTAGAGGTGATAACAATGTCTACAAGAGATACAAAAGAAATTATACAAAAGTATAATCAAGTAGGAAGTTCCATAGAAGGTCGGAGCTATGGTGAATCTTGGAGCAATGAGCTTTGGCTTTTCCTACAAGATCTTTATAGATCTCTATGATCAATATTTTCATGATCAAGATTTGTAATTTGTATTCATGGTCAATTTTGTATATATCAAAAAATGTGTTTGATAGTGT

Fln Alignment:

Contig8194___NQLSSLPESWRDPKMCALLMAGNQ-LTEIPRKVIGSMISLKVLDLNDTSVQSLPESVGCLKQLACLRLVRVPIKRLPASLTALPNLQILDLSE-SSITELPSDIDRLRCLMFLNMYGCYDLQCLPSSFSGLTSLQWLDMRYCSNVWATRDKKRR-----------WKKVASIADFSSLTQLKLLRVQNNREIISEGILGSMVQMETLELQLTSMTELPSDIFSISKLRRFSLECSHVVKMESKFSEFHNLMHLQLWNCSTLEDLP-DLHKLRSLKRLDIFNCVKLRKFPKEFGEIGAFSLLEMFSLVNXXXXXXXXXXXXGAMPMFKIFTMMQCEVLHTLPESYLNLKTLQKVRVFSCSMVLENLQ
D5ABU5______________NKFKSIPDEFKGQDVRAMLLSESKSLEDIPSSVMRTFTSIRVLDLGGTSIKALPDSFGALKQLVFLRLARAPIKKLPDSITRLKKLQILDLSHCGQLSELPYGLYKMTGLLYLDLSFCPGLNCIPCGISMLTSLQYLKMEKCWKAWQPTPQPRKTLCDLTGGRAEYKRAARFNDLHSLKHLKWLALEEFRQPFTEGIVGNMVEMRTLILRMQQMEVLPEDMKSMVELGTLVVQSSVLVKIPSWICGFQQLSCLILKSCDKLEEIPVGLEKLEWLRRLDIIGSWTLKELPDAYGKDGAFPRLESFWLDQTRVVEVFPPISPGAMPLLKKLGLVFCLNVKTLPPGLQNLQNLREVHVYNSTLILKSME

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1617		8		91	0.999807

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain