SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8185

Length: 2672 nt

UniGene Fasta

>sp_v3.0_unigene8185
ACATGGGGGAGGTACGAGAATTGGGTATCTGCGGCCTGCCTCATTGGATTGCAGGAAGGTCTCTGTAAGCAAGTTCCATAAGAAGAGCCCAAACCAGTGGTTTCTTTCATCCTGTTTTCTCCAGCCATTCCCTTTTTCTGTAAACTCATTTCCGCTTCTTCTGCTGCTGCAATTCGAGCTTTGCTTTTCTCTTCGCAGCAACATACACCAACATGTCGACCAGTTGCTTGAGCGAAAGGTTGTTAATGTCCAGGTTAATGCAAGGCGATTTCAGTGAAGTCCCGCCGGAGCCCTTTGCCAGCAGCGACGAGGATGTCGAACAGGAGGCCAGCACAGACATGACGATTTCATACTACGAGAATGTGGCGCCGATGGCCTCGAGCCGCGACTTTTTGTCAAACAACAACAACGAGGGGGAAGGCATCATGCACCACGCCTCAAGCTGCATTGATGAGTCGTACAATCAGGAAGTCCGCCCGCTGCTGGATGTAGTGGACAAGCTGCGTAATATGGATATTACTAAGGAGGGCATCGAGCTCCCCACCATAGTTGTTGTTGGAGATCAGTCCAGTGGAAAATCAAGCGTGTTAGAATCTCTCGCCGGGGTCAGACTCCCCAGAGGCCAAGGTATTTGTACGCGAGTCCCGCTCGTTATGTGCCTAAAAAGTTGCAAAGATGGATCGCAAGCTTCCATTTCTATTAAATACCCGGGCAAGGAAGAGCGAATTCAAGAATACGAGATAACAGAGAAAATAAAAAATGCTACAAACGCCATCGCGGGAAAAGGGTGTTGCATAAGCGACAATCCGATAACGCTTGAGATTGTAAGAGAGGGAGCTCCGGATTTGACACTGGTGGACTTGCCAGGTATTACCCGGGTGCCCATATCAGGTCAGCCGCCGGATATATATGAACATATTTCAGAAATCATAATGCGTTACATAATTCCAGAGGAAAGCATTATTCTGAATGTCATAACCGCAGATGTGGATTTTTCCACCTGCGATTCAATCAAAAAGTCCAAATATGTGGACGAACGCGGCGAACGAACTTTGGCCGTCGTCACCAAATGCGACCGCGCTCCTGAAGGGCTTCTGGAGAAGGTCACCATGAACGCCGTCGACATACGCCTGGGATATGTCTGCGTCATAAACCGCATCGGCGACGAAACCAACGAGCAGGCGCGGAAGAACGAGAAGGTATTTTTCGAGAGCCATCCAAAGCTCAAAAAGATCGACAAGTCCATGGTGGGCATCCCTGTTTTGGCCAAGAAATTGATGCAAATTCAAGGGAAAAGCATCAACAAATCTATGCCGACTGTTGTGAAGAAAATAGCGGCCATGCTCTCGGAACGGCAGGTGGAGCTGACCAATCTGCCGCAGCATCTTTGCAGTCCGGGTGAGGCCAACGTGCTGTTCTACAAGCGGCTGAAGTCAATGGAAGAAAGTCTCAACAAGATTCTGATCGAGGGGGATTTCAAGGAGTTCCAGAATGACCGGAAAATGCACTGCACGGCTCGGCTCTGGGAGATGTTTGAAGGCTACTACGCCGATCTCCACGAGACGGGCTCGATGAGTGGAAAGTTTCTGGCGAAGGAGACGGAGATGCTGGATGAGGCTAAGGGCGTTGGGCTTCCCAACTTCTTGTCACGCCCAGTGTTCAAGAATCTGTTGGAGGCTCTGGTGGACCAGATCGCCGACAGGAGCTTGGAGCTGGTCTTCAGTGTCTGGGAATACATGGAAACTGTCTTACTGCGAGTAATTGACTGCTATTGCCGTTTCCATCCGCGGCTGCAGGGCGAGGCACGGAGAGTTGCCCAGGATCTTGTTGTGAAGAAGAAGAATGATTGCGAGAAGCATGTGAGGGAGACCATCGAAATGGAGAAATTGGTGGACTCCACTCTCAGTCCTTCATACATGGAAGAATACGGCAGGCTGCTCACATTCAAGAGCCAGTTCTTTGACAGACTCAGTAATGCCAGGCGCAATGGTTACGCCATGGTTGAACTGGATGGAATTGATGTGGATGTGTTGGACATACTGGATTTTCCTCCTGAACGCGTGGTAGCGGCTTACGATATGCAGATGAGCGTGATGGCTTACTGGAGGGTGGTTACTCTGAGGATGGGCGATGGAATTCCTTTGCGTCTACAATTCATGTGCAAAAAATTGGTGATGACTGAGTTTACCAGTGAGTTTCTCACCCAAGTGGGAGGTCCCAAATATGGTTCCATGGAGGAGATAATGGAAGAGAGTCCGGAGGTTGCGAATAAGAGGAGTAGCTTGACCAACAGCATCGGTATGCTTACAGAGTCCAAGAACACTGTTGAGGCTATCATGGACCGGATTACAAAGGTTTGAAACATCATATTTCCAACTTTGATCGGATTACTCTTCTTTTTTCTTGCCATAACGACCAGTCGTGCAGTCCCGTCGAAAGTTTATCCAGCGTAAATTATGTATCCAGGGCATTAGCTATGTACCGTCTCCCTTGATTTCATGGTGATACGATATTTTATTTTCCGAAGTAGCAGTGAACCTGTTGTAGTCAAGTCAATAATGTACAGTCTACCTTAATTCCCGTTAATATGAAGGTTTTGTCATGGTGATGCCATGATTTTTGTTGTTATCTCTTACATCTTACATTTTTAACTTTTATAAATCGTACATATT

Ace file of the UniGene sp_v3.0_unigene8185

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dynamin related protein 4C [Arabidopsis thaliana] gb\|AAB71966.1\| similar to 'Mx' GTP-binding proteins [Arabidopsis thaliana] gb\|AEE33694.1\| Dynamin related protein 4C [Arabidopsis thaliana]	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%
Sma3	Interferon-induced GTP-binding protein mx, putative	-	-	1.176e-08	-

Source	Gene names
Sma3	At1g60500; At1g60530; F8A5.5; F8A5.7; F8A5.8; LOC_Os03g15420; OSIGBa0103I21.1; OSIGBa0131J24.8; OSJNBb0080H08.3; Os03g0260000; Os04g0129900; OsI_10825; OsI_14698; OsJ_10209; OsJ_13631; PHYPADRAFT_41676; PHYPADRAFT_41680; PHYPADRAFT_41695; PHYPADRAFT_41701

Source	GOs	Term	Type	e value	Identity
Sma3	GTPase activity	GO:0003924	Molecular Function	0.0	-
Sma3	GTP binding	GO:0005525	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-
Sma3	Interferon-induced Mx protein	IPR015577	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60500.1	DRP4C Dynamin related protein 4C chr1:22291582-22293822 FORWARD LENGTH=669	47%
RefSeq	Arabidopsis thaliana	NP_176252.1	Dynamin related protein 4C [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002304086.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLP8

Fln msg: your sequence is longer than subject: 716 - 608

Fln protein: MSTSCLSERLLMSRLMQGDFSEVPPEPFASSDEDVEQEASTDMTISYYENVAPMASSRDFLSNNNNEGEGIMHHASSCIDESYNQEVRPLLDVVDKLRNMDITKEGIELPTIVVVGDQSSGKSSVLESLAGVRLPRGQGICTRVPLVMCLKSCKDGSQASISIKYPGKEERIQEYEITEKIKNATNAIAGKGCCISDNPITLEIVREGAPDLTLVDLPGITRVPISGQPPDIYEHISEIIMRYIIPEESIILNVITADVDFSTCDSIKKSKYVDERGERTLAVVTKCDRAPEGLLEKVTMNAVDIRLGYVCVINRIGDETNEQARKNEKVFFESHPKLKKIDKSMVGIPVLAKKLMQIQGKSINKSMPTVVKKIAAMLSERQVELTNLPQHLCSPGEANVLFYKRLKSMEESLNKILIEGDFKEFQNDRKMHCTARLWEMFEGYYADLHETGSMSGKFLAKETEMLDEAKGVGLPNFLSRPVFKNLLEALVDQIADRSLELVFSVWEYMETVLLRVIDCYCRFHPRLQGEARRVAQDLVVKKKNDCEKHVRETIEMEKLVDSTLSPSYMEEYGRLLTFKSQFFDRLSNARRNGYAMVELDGIDVDVLDILDFPPERVVAAYDMQMSVMAYWRVVTLRMGDGIPLRLQFMCKKLVMTEFTSEFLTQVGGPKYGSMEEIMEESPEVANKRSSLTNSIGMLTESKNTVEAIMDRITKV*

Protein Length: 717

Fln nts: ACATGGGGGAGGTACGAGAATTGGGTATCTGCGGCCTGCCTCATTGGATTGCAGGAAGGTCTCTGTAAGCAAGTTCCATAAGAAGAGCCCAAACCAGTGGTTTCTTTCATCCTGTTTTCTCCAGCCATTCCCTTTTTCTGTAAACTCATTTCCGCTTCTTCTGCTGCTGCAATTCGAGCTTTGCTTTTCTCTTCGCAGCAACATACACCAAC_-_ATGTCGACCAGTTGCTTGAGCGAAAGGTTGTTAATGTCCAGGTTAATGCAAGGCGATTTCAGTGAAGTCCCGCCGGAGCCCTTTGCCAGCAGCGACGAGGATGTCGAACAGGAGGCCAGCACAGACATGACGATTTCATACTACGAGAATGTGGCGCCGATGGCCTCGAGCCGCGACTTTTTGTCAAACAACAACAACGAGGGGGAAGGCATCATGCACCACGCCTCAAGCTGCATTGATGAGTCGTACAATCAGGAAGTCCGCCCGCTGCTGGATGTAGTGGACAAGCTGCGTAATATGGATATTACTAAGGAGGGCATCGAGCTCCCCACCATAGTTGTTGTTGGAGATCAGTCCAGTGGAAAATCAAGCGTGTTAGAATCTCTCGCCGGGGTCAGACTCCCCAGAGGCCAAGGTATTTGTACGCGAGTCCCGCTCGTTATGTGCCTAAAAAGTTGCAAAGATGGATCGCAAGCTTCCATTTCTATTAAATACCCGGGCAAGGAAGAGCGAATTCAAGAATACGAGATAACAGAGAAAATAAAAAATGCTACAAACGCCATCGCGGGAAAAGGGTGTTGCATAAGCGACAATCCGATAACGCTTGAGATTGTAAGAGAGGGAGCTCCGGATTTGACACTGGTGGACTTGCCAGGTATTACCCGGGTGCCCATATCAGGTCAGCCGCCGGATATATATGAACATATTTCAGAAATCATAATGCGTTACATAATTCCAGAGGAAAGCATTATTCTGAATGTCATAACCGCAGATGTGGATTTTTCCACCTGCGATTCAATCAAAAAGTCCAAATATGTGGACGAACGCGGCGAACGAACTTTGGCCGTCGTCACCAAATGCGACCGCGCTCCTGAAGGGCTTCTGGAGAAGGTCACCATGAACGCCGTCGACATACGCCTGGGATATGTCTGCGTCATAAACCGCATCGGCGACGAAACCAACGAGCAGGCGCGGAAGAACGAGAAGGTATTTTTCGAGAGCCATCCAAAGCTCAAAAAGATCGACAAGTCCATGGTGGGCATCCCTGTTTTGGCCAAGAAATTGATGCAAATTCAAGGGAAAAGCATCAACAAATCTATGCCGACTGTTGTGAAGAAAATAGCGGCCATGCTCTCGGAACGGCAGGTGGAGCTGACCAATCTGCCGCAGCATCTTTGCAGTCCGGGTGAGGCCAACGTGCTGTTCTACAAGCGGCTGAAGTCAATGGAAGAAAGTCTCAACAAGATTCTGATCGAGGGGGATTTCAAGGAGTTCCAGAATGACCGGAAAATGCACTGCACGGCTCGGCTCTGGGAGATGTTTGAAGGCTACTACGCCGATCTCCACGAGACGGGCTCGATGAGTGGAAAGTTTCTGGCGAAGGAGACGGAGATGCTGGATGAGGCTAAGGGCGTTGGGCTTCCCAACTTCTTGTCACGCCCAGTGTTCAAGAATCTGTTGGAGGCTCTGGTGGACCAGATCGCCGACAGGAGCTTGGAGCTGGTCTTCAGTGTCTGGGAATACATGGAAACTGTCTTACTGCGAGTAATTGACTGCTATTGCCGTTTCCATCCGCGGCTGCAGGGCGAGGCACGGAGAGTTGCCCAGGATCTTGTTGTGAAGAAGAAGAATGATTGCGAGAAGCATGTGAGGGAGACCATCGAAATGGAGAAATTGGTGGACTCCACTCTCAGTCCTTCATACATGGAAGAATACGGCAGGCTGCTCACATTCAAGAGCCAGTTCTTTGACAGACTCAGTAATGCCAGGCGCAATGGTTACGCCATGGTTGAACTGGATGGAATTGATGTGGATGTGTTGGACATACTGGATTTTCCTCCTGAACGCGTGGTAGCGGCTTACGATATGCAGATGAGCGTGATGGCTTACTGGAGGGTGGTTACTCTGAGGATGGGCGATGGAATTCCTTTGCGTCTACAATTCATGTGCAAAAAATTGGTGATGACTGAGTTTACCAGTGAGTTTCTCACCCAAGTGGGAGGTCCCAAATATGGTTCCATGGAGGAGATAATGGAAGAGAGTCCGGAGGTTGCGAATAAGAGGAGTAGCTTGACCAACAGCATCGGTATGCTTACAGAGTCCAAGAACACTGTTGAGGCTATCATGGACCGGATTACAAAGGTTTGA___AACATCATATTTCCAACTTTGATCGGATTACTCTTCTTTTTTCTTGCCATAACGACCAGTCGTGCAGTCCCGTCGAAAGTTTATCCAGCGTAAATTATGTATCCAGGGCATTAGCTATGTACCGTCTCCCTTGATTTCATGGTGATACGATATTTTATTTTCCGAAGTAGCAGTGAACCTGTTGTAGTCAAGTCAATAATGTACAGTCTACCTTAATTCCCGTTAATATGAAGGTTTTGTCATGGTGATGCCATGATTTTTGTTGTTATCTCTTACATCTTACATTTTTAACTTTTATAAATCGTACATATT

Fln Alignment:

Contig8185___LPTIVVVGDQSSGKSSVLESLAGVR-LPRGQGICTRVPLVMCLKSCKDGSQASISIKYPGKEERIQEYEITEKIKNATNAIAGKGCCISDNPITLEIVREGAPDLTLVDLPGITRVPISGQPPDIYEHISEIIMRYIIPEESIILNVITADVDFSTCDSIKKSKYVDERGERTLAVVTKCDRAPEGLLEKVTMNAVDIRLG--------YVCVINRIGDETNEQ-----ARKNEKVFFESHPKLKKIDKSMVGIPVLAKKLMQIQGKSINKSMPTVVKKIAAMLSERQVELTNLPQHLCSPGEANVLFYKRL-----KSMEESLNKILIEGDFKEFQNDRKMHCTARLWEMFEGYYADLHETGSMSGKFLAKET--EMLDEAKGVGLPNFLSRPVFKNLLEALVDQIADRSLELVFSVWEYMETVLLRVID--CYCRFHPRLQGEARRVAQDLVVKKKNDCEKHVRETIEMEKLVDSTLSPSYMEEYGRLLTFKSQFFDRLSNARRNGYAMVEXXXXXXXXXXXXXFPPERVVAAYDMQMSVMAYWRVVTLRMGDGIPLRLQFMCKKLVMTEFTSEFLTQVGGPKYGSMEEIMEESPEVANKRSSLTNSIGMLTESKNTVEAI
B8LLP8______________LPSIAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDEGSRDYAEFLHQPRKKFTDFAQVRKEIADETDRITGRSKQVSSVPIHLSIYSPNVVNLTLIDLPGLTKVAIEGQAESVVADIENMVRSYIEKPNSIILAISPANQDLATSDAIKISREVDPKGERTFGVLTKVD-----LMDKGT-NAVDILEGKAYRLQFPWVGVVNRSQADINKSVDMVVARRREREYFSSNPDYKHLAHRM-GSEHLAKILSKHLETVIKSRIPSLQSLINKTLAEIESELSRLGKPIAADAGGQLYAILEICRAFDQIFKEHLDGVRPGGD--------------RIYNVFDNQLPAALKRLSFE-KHLSMENVRKRITEADGYQPHLIAPEQGYRHLIETSLSTIRGPAEATVDAIHYVLKDLAHKAVSETAELKQYPSLRIEVGNAAIDALEKLRDESRKSALKLVDME--------CSYL---------TVDFFRKLPQDLEKG-----------GNPSQSVFDRYNETYLHRIGNNVLAYVNMVCGYLRNAIPKSVVHCQVREAKRSLLDHFFTELGKKEGKQLSTMLDEDPAVMERRAGLAKRLELYKSAQAEIDAV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
898	16		83		0.994512
1142	25		75		0.996473
2523		6		93	0.999264
2619	8			79	1.0
2623	11			88	0.999952
2626	8			66	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
399	410	AAC AAC AAC AAC	12
1832	1843	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain