SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8177

Length: 1654 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8177

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-coumarate--CoA ligase-like 5 n=3 Tax=Arabidopsis RepID=4CLL5_ARATH	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Acyl:coa ligase	-	-	2.838e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	5.927e-32	-
Sma3	Ligases, Forming carbon-sulfur bonds, Acid--thiol ligases.	EC:6.2.1.-	-	0.0	-

Source	KEGGs	Term	Type	Identity
Sma3	Geraniol degradation	00281		%
Sma3	Tyrosine metabolism	00350		%
Sma3	Benzoate degradation	00362		%
Sma3	Fluorobenzoate degradation	00364		%
Sma3	alpha-Linolenic acid metabolism	00592		%
Sma3	Aminobenzoate degradation	00627		%
Sma3	Propanoate metabolism	00640		%
Sma3	Ethylbenzene degradation	00642		%
Sma3	Carbon fixation pathways in prokaryotes	00720		%
Sma3	Limonene and pinene degradation	00903		%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		%
Sma3	Biosynthesis of plant hormones	01070		%
Sma3	Metabolic pathways	01100		%
Sma3	Biosynthesis of secondary metabolites	01110		%
Sma3	4-coumarate--CoA ligase.	EC:6.2.1.12	-	-

Source	KEGGs	Term	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	%
Sma3	Phenylalanine metabolism	00360	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	4CL; 4CL-1; 4CL-2; 4CL-2a; 4CL1; 4CL2; 4CL3; 4CL4; 4CLL1; 4CLL2; 4CLL3; 4CLL4; 4CLL5; 4CLL6; 4CLL7; 4CLL8; 4CLL9; 4cl; ABG-1; ACLL13; ACLL14; ACLL15; ACLL16; ACLL18\|Ptr4CL13; ACLL20; ACLL21; At1g20480; At1g20490; At1g20500; At1g20510; At1g62940; At3g21230

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-
Sma3	phenylpropanoid biosynthetic process	GO:0009699	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20510.1	OPCL1 OPC-8:0 CoA ligase1 chr1:7103645-7105856 REVERSE LENGTH=546	55%
RefSeq	Arabidopsis thaliana	NP_564115.1	OPC-8:0 CoA ligase1 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002327955.1	acyl:coa ligase [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP93

Fln msg: your sequence is shorter than subject: 493 - 548

Fln protein: MGALAAGLHGLGVRKGDVVLVISPNSIALPCIYLAILSIGAILTTANPLSTEAEISRQVEDSKPVIIFTPANLIKKVRATQSPVILIEGNTEEGSGRGCISTLNLLLQSDISGLPAVDIKQEDTATLLYSSGTTGKSKGVISTHRSLIAMISGALSRWDEMEGGEKICLFIIPLFHVFGFFCTLSCIAAGSNIVVLPKFDLAEMLSAIQKYRVKSLPAAPPILVALNKSPIVANYDLTSLHTIGCGGAPIGKDIIDNFAARFPTVQIKQGYGLTESNGTVSSTITDEENRHYGTAGLLAAHVEAKVVDTATGRAMPPNHKGELWLRGPTIMKGYFGNVEATELTLDLEGWLKTGDLCYIDEEGFLFVVDRIKELIKYKAFQVAPAELEELLLSNPDITDAAVIPYPDHEAGQIPMAFVVKKSNSNFCEEDVINFVAKQVSPYKKIRRVAFVNSIPKSPTGKILRKDLIHQALSTSRSDSHSQTISLCEAVIC*

Protein Length: 494

Fln nts: ATGGGGGCCCTCGCTGCCGGATTGCATGGCCTCGGGGTTCGAAAAGGCGACGTGGTGCTGGTGATTTCCCCCAATTCCATCGCCCTTCCATGTATTTACCTCGCCATCCTCTCCATCGGAGCAATCCTCACAACCGCCAATCCGCTCAGCACAGAGGCAGAGATTTCAAGGCAGGTTGAGGATTCCAAACCCGTAATTATCTTCACACCAGCAAATCTGATCAAGAAGGTCCGTGCAACGCAATCGCCTGTCATTCTCATAGAGGGAAACACAGAGGAAGGATCGGGCAGGGGCTGTATTTCTACTTTAAACCTCCTCTTGCAGTCTGACATTAGCGGCCTCCCTGCAGTGGACATCAAACAGGAAGACACTGCCACGCTTCTCTACTCGTCGGGTACAACGGGCAAAAGCAAGGGAGTCATCTCCACCCATAGAAGTCTCATTGCCATGATATCTGGAGCTCTGAGCAGATGGGACGAGATGGAGGGAGGGGAGAAGATATGTTTATTCATCATCCCGCTGTTTCATGTTTTCGGATTTTTCTGTACACTTTCTTGCATTGCAGCTGGGAGTAACATTGTGGTCCTGCCCAAATTCGATTTGGCTGAAATGCTTTCGGCCATACAGAAGTACAGAGTGAAGTCCCTGCCTGCTGCTCCGCCTATTTTGGTCGCTTTAAATAAGTCTCCTATTGTTGCCAATTACGATTTGACTTCGCTTCACACGATCGGCTGCGGTGGAGCACCAATTGGCAAAGACATCATCGACAACTTCGCTGCTCGATTTCCAACTGTTCAAATTAAACAGGGTTATGGATTGACAGAGTCTAACGGGACAGTATCCTCGACTATAACCGATGAAGAAAACAGACATTATGGAACAGCGGGCTTGCTTGCAGCTCATGTGGAAGCTAAAGTGGTGGACACAGCTACTGGCAGAGCTATGCCTCCCAACCACAAAGGGGAGCTCTGGTTACGAGGACCTACAATCATGAAAGGATATTTTGGTAATGTTGAAGCTACTGAGTTAACTTTAGACTTGGAAGGATGGCTGAAAACTGGGGATCTATGTTACATCGATGAGGAAGGCTTCCTTTTTGTTGTGGACAGAATAAAGGAGTTGATCAAGTACAAAGCATTTCAGGTTGCTCCAGCGGAATTAGAGGAGTTGCTCCTCTCGAACCCAGATATTACTGATGCTGCTGTTATTCCGTATCCTGATCATGAAGCAGGTCAAATACCGATGGCATTTGTTGTGAAGAAGTCAAACAGCAATTTCTGCGAAGAGGATGTCATAAATTTCGTTGCAAAACAGGTTTCACCATACAAGAAGATACGTCGAGTAGCATTTGTCAATTCAATTCCCAAGTCCCCCACGGGCAAAATCCTAAGAAAAGATTTGATTCATCAGGCTCTGTCCACCTCCAGAAGTGACTCCCACAGTCAAACCATTAGTCTTTGTGAAGCAGTCATCTGCTAG___TTTTTAATTTAAACAGCATATTTTGTAAGCATGTGTCCAGGTGATACAATCTCATAAAGCTGGTTATGAAAATCGAATTATTGATCAGCCTGTTTGATCATTTGTATCACGCAGAGTATAGTTTTGTATTCCGACTTCCTCGGCATTGACAGGTATAGGTAGTAGAAATTTGAAA

Fln Alignment:

Contig8177___VRKGDVVLVISPNSIALPCIYLAILSIGAILTTANPLSTEAEISRQVEDSKPVIIFTPANLIKKVRATQSPVILIEGNTEEGSGRGCISTLNLLLQSDISGLPAVDIKQEDTATLLYSSGTTGKSKGVISTHRSLIAMISGALSRWDEMEGGEKICLFIIPLFHVFGFFCTLSCIAAGSNIVVLPKFDLAEMLSAIQKYRVKSLPAAPPILVALNKSPIVANYDLTSLHTIGCGGAPIGKDIIDNFAARFPTVQIKQGYGLTESNGTVSSTITDEENRHYGTAGLLAAHVEAKVVDTATGRAMPPNHKGELWLRGPTIMKGYFGNVEATELTLDLEGWLKTGDLCYIDEEGFLFVVDRIKELIKYKAFQVAPAELEELLLSNPDITDAAVIPYPDHEAGQIPMAFVVKKSNSNFCEEDVINFVAKQVSPYKKIRRVAFVNSIPKSPTGKILRKDLIHQALSTSR
B8LP93______________IRKGDVVLVISSNSIALPCIHLAILSIGAILTTANPLSTEREIVTQVKDSKPVIAFTLSHLIHKLRATQIPIILIQGTLESR----CVTTLHDLLQSDLKDMPSIDIKQDDTATLLYSSGTTGKSKGVVSTHGNYIATIAGNRVRYETE--GCKMYICSMPLFHIYGLRFLVCTLAAGATIVVPPKFDMEEILRSIERYRVTLLPTVPSVLAALAKSTGAQKYDLGSLQQISLGGAPLGKDVTLTFNAKFPRIQIRQGYGLTETTGAIAYTNSDEENRRNGTVGLLSDVVEAKVVDPDSAKPLPPNQRGELWLRGPTVMKGYFGNEHATATTLDSEGWLRTGDLCYFDEEGFLFVVDRLKDLIKYKAYQVAPAELEELLLSHPEISEAAVIPYPDQEAGQIPMAFVARSPSSNLSESDVIKFVAEQVVHYKKIRRVAFTNSIPKNASGKILRKDLIEKNVPTSR

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
734		80	20		0.995493
786	28	71			1.0
795	83		16		0.994512
874	22		77		0.999999
933	12		87		0.992554
943	12		87		0.992554
980	83		16		0.994512
1045		16		83	0.994512
1088	25		75		0.996473
1089		25	75		0.996473
1091	75			25	0.996473
1092			75	25	0.996473
1115	20		80		0.995493
1133			83	16	0.994512
1142	66	33			0.997452
1257	20		80		0.995493
1258		20		80	0.995493
1259	20			80	0.995493
1260			80	20	0.995493
1282	25			75	0.996473
1285			75	25	0.996473
1296	33		66		0.997452
1475		25		75	0.996473
1511			25	75	0.996473
1515		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain