SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8154

Length: 1240 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8154

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylcoumaran benzylic ether reductase-like protein n=1 Tax=Populus trichocarpa RepID=B9HHE0_POPTR	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-
Sma3	NmrA-like	IPR008030	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002310455.1	phenylcoumaran benzylic ether reductase -like protein [Populus trichocarpa]	0.0	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKF2

Fln msg:

Fln protein: MNRVLIVGGTGYTGKYMAKASVSQGYPTYVLVRPATAAAPDSFKAKLLQQFKDIGIHILQGSLDDHNSLVDAIKQVDIVISAVAIPQHLDQFNIIRAIQEVGIANIKRFVPSEFGNEVDTVQALPPFQTVCDNKRKIRRAIEEAGIPFTFFSANTYAMYFIDYFFHPRQKPQPEEVVIYGDGLSKAFMNSEEDIAALTIMMANDPRTMNRLVIYRPPNNIICQSELVSLWEKKIGRSLKRVFLPEAEMVRLSETLPRPEQNIPVSILHNIFVKGEQTKFELGEEDLEACELYPEYKHTTIDELLDISVVDPPETKPASFI*

Protein Length: 322

Fln nts: TATTGGGGTAGAGCTGAGGAGTGTTCTGCACCATTTTGTAAGCCCCATTTTGTGTTCTTTAGCTGATTCTCTATCAATTGGGTTCTTAAGCTTCAAG_-_ATGAATAGGGTTTTGATTGTTGGAGGCACCGGATACACTGGGAAATACATGGCAAAAGCCAGTGTTTCACAGGGCTATCCAACCTACGTTCTTGTCCGTCCTGCTACAGCAGCTGCTCCTGATTCGTTCAAGGCAAAATTACTTCAGCAATTCAAAGATATTGGCATTCATATTCTTCAAGGATCTTTAGATGACCACAATAGCCTTGTGGATGCAATCAAGCAAGTAGACATAGTAATATCAGCAGTTGCCATTCCTCAGCATTTGGATCAGTTTAACATCATAAGGGCCATTCAAGAAGTTGGAATTGCAAATATAAAGAGGTTCGTTCCCTCAGAGTTTGGCAACGAGGTCGACACAGTACAAGCTCTCCCTCCCTTTCAGACAGTGTGTGACAATAAAAGGAAGATTCGCAGGGCCATTGAAGAGGCCGGCATTCCATTCACCTTCTTTTCTGCAAATACTTATGCCATGTATTTTATTGATTATTTCTTTCATCCCCGTCAAAAACCGCAGCCAGAGGAAGTTGTCATCTATGGGGATGGTCTCAGCAAAGCGTTTATGAATTCAGAAGAGGACATTGCAGCTCTCACGATAATGATGGCAAACGATCCCAGAACAATGAATAGGCTTGTGATTTACAGGCCACCAAACAACATAATCTGCCAGAGTGAGCTTGTCTCGTTGTGGGAAAAGAAGATTGGAAGAAGTCTGAAGAGAGTTTTTCTGCCCGAGGCCGAGATGGTTAGACTCTCAGAGACTCTGCCTCGTCCAGAGCAGAACATTCCTGTCTCGATTTTGCACAACATTTTTGTGAAAGGAGAGCAGACAAAGTTTGAGTTGGGAGAGGAAGACCTGGAGGCGTGTGAACTGTATCCAGAGTACAAGCACACCACCATAGACGAATTGCTTGACATCTCCGTTGTGGATCCACCAGAAACAAAACCTGCATCATTCATATGA___GGGATTATATTTAGTCATCATTATAGATTTATATTCAAGTTTAATGTATAGGAATGATTTATTTTGAAGTTTCCCATTTGAATTCCATGTTCATCGTCGTCTCACATTTAAATTGGCAGTAGTCTAACCAGACTTAGAGGCATGTGAACTGTATCCAGGGTACAAGACATTACCATAGAC

Fln Alignment:

Contig8154___MNRVLIVGGTGYTGKYMAKASVSQGYPTYVLVRPATAAAPDSFKAKLLQQFKDIGIHILQ-GSLDDHNSLVDAIKQVDIVISAVAIPQHLDQFNIIRAIQEVGIANIKRFVPSEFGNEVDTVQALPPFQTVCDNKRKIRRAIEEAGIPFTFFSANTYAMYFIDYFFHPRQKPQPEEVVIYGDGLSKAFMNSEEDIAALTIMMANDPRTMNRLVIYRPPNNIICQSELVSLWEKKIGRSLKRVFLPEAEMVRLSETLPRPEQNIPVSILHNIFVKGEQTKFELGEEDLEACELYPEYKHTTIDELLDISVVDPPETKPASFI
A9NKF2______________MNRILIIGGTGYIGKYMAKASVSLGYPTYILVRPTTAAAPDSFKAKLLQEFKDIGIHVLQEGSLDDHKSLVDAIKQVDVVISAVAIPQHLDRFNIIKAIKDVGITNIKRFVPSEFGNEVDTVQALPPFQRVCDNKKKFRRAIEEAGIPFTFFSANSYAKYFIDCFFHPRQKPQPEEVVIYGDGLTKAFMNSEDDIAALTIMMANDRRTMNRLVIYRPTSNIISQSELVSLWEKKTGRNLKRVFLPEAEMVRLSEILPRPDQNIPVSILHNIFVKGDQTNFEMGEKDLEACELYPGYRHTSIDELLAISVVDPPETKLASFI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1147	20	80			0.995493
1235		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain