SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8152

Length: 2318 nt

UniGene Fasta

>sp_v3.0_unigene8152
CGTCGTGACCTTGGCTGTCACTCAGCTGGTTCCCAGAAGTTGGAGAATGAACGATAGAATGCCCCTCTATCTGCTCTATGTATTCTACTGTCTAGCTATATTCGTTATTCCAACTGAGGCTGGGAGAGAATGGAATTCTATTGGTATCAACTATGTTCGTGCAGGGAAAAATCGTCTCTCCCCTACCGAGGCTGTTTCACTCATGAAAGCCCTTAAAATAGGCAGAGTGAAGCTGTATGATTCTGACCCAGAAGTTCTCACTGCGTTGGCCAACTCGGGTCTTTCTGTTGTAATAGCTGTGAAGAATGAGGAGATTCCAACCGTTGCTTCCAGCATATTGAATGCTGATGAGTGGGTTAAACAAAGTGTTTTAGCACACTATCCTGCAACCAGAATTAATGCCATAACTGTTGGAAACGAAATCCTCACCGACTACAATAATCAGGATAGATGGTCTAAGCTGGTTCCTGCTATGCAGAACATTCACAGTTCACTTGTACGTTGGAATCTTAATAAAAGGATTAAGGTGACTACAACTGTAGCCATGGATGCTCTTAACTCCTCATCAGCTCCTTCTTTGGCAAGGTTCAGGGATGACATTGCAGAAAGTGTGATGAAACCTCTGCTACGCTTCATGTCCAATTCAAAATCCTTCTATTTTGTCAACGCTTATCCATATTTTGCATGGGCAGCCAATGCCAATAAAGTTCCTGTAGATTATGCTATATTTGGAGCAGCTAAGGAAGCAGTCCAAGATGGAGGATTGAAGTATACAGACATGCTTTCTGCTCAGTTGGATGCCAATTTAGCTGCCATGGAAAAATTGGGATACCCCCATGTGAAAATTGCAATTAGCGAAACAGGTTGGCCTGCATCAGGAGGTCCTGGAGCAAATGTTGATTTGGCAGCCACATACAACAGAAGGGTAGTTGTAAGAATGCTGGCAAATCCACCTTTGGGTACTCCTAGAAGGCCTAGAACTTTTGTACCCACTTATCTCTTTGCTCTATTTGATGCAGATAATAATAAACGTGGCACAACAAGAAACTGGGGTATGCTGTACCCAAATGGGTCTCAGGTATATCCCATAGACATGACTGACAAACTTACCGATTCGGAATTTGAATCCCTCAAGTCCATCAGGCCTTTCCCTGCCCAGCCAACTCCTATCCGCTCATCTATCAGTAGGTCTTCCCCTTTAACTGGGAGTTATCCAAGTCCTGTTCCCTCATATTACTCTGGTCCTCCTATATTAGTCAATCCTCCAGCGGCTTCACCCAGTACCGATAATATACCTTTCAGTTCCCCAATACCTTCTGTGCATCCTAATCCTCATCCAACTATCCATGTGCCACCATACTCACCATCTCCTATTTCTACAAGCCTTCCTACTTTTCCTCCTCCTATTGCAAACTATCCACCCCACTGTATGCCCTATCCTCCTACCACGCCTATTACTACGCCTCCATTTGCACCCTATCCACCTTCAAATCCCACAGTTCCATACACTCCTAGTCCCCCACCAACTACTCCCTACTCACCTTATCCTCCCAGCACACCATCTACACCGTCAGGTCAATCCCTCTGGTGTGTAGCAAAACCTACTGTGCCAAATTCAGTCTTGCAGCAGGCTATGAACTATGCATGTGGAGCGGGTGCTGACTGTAAATCTATCCAGCCAAACGGACTATGCTTTTCACCTGACACAATGGTTGCACATGCTTCTTTTGCTTTCAACAGCTATTGGCAAAAGAATAAAGGTATTGGTGGGACCTGTGATTTCGGAGGGACTGCCATGCTGATTACAATGGACCCAAGTTATGAAGGTTGCCACTTTGGTTTAAACTAAGGAATAAACATTGAGTTATTCTCCAATATAGCAATTAAGGTCAAAATCATCACAATCTTCCTGTAAAACAGAATCTACAGATTTGCAGTTCAGTTTTGGGGATGTTCTGTCGAGGGAATCAGTGCATGCCAACTGGTTTTGTTCATAGCAGAAGTCATAACAAAGTGTTGTTACTGCACTGCAATATCTGGTTATTTTGTAGGGGTATTTCACAGGCTCTTAGGTTGGAATTTGAATCACTTGTGTGTGACTTTTATATCTTCACTCTTGCACACAAGAATTGTTCGGTGTATTATATCTTAGAGTTCTGTGACTAAGATTTTCATCATTAATATCTATTTTGTTACTCTTCAATATGTTTTGTCTCCAGTAAAATTGTAACCTGGTCAGAAAGTGGCAACTGTAATTTCTATAATAGTTGTTTATCTTATTTAATTGTAATCGATGACCACCATAAGAGATGGATGGA

Ace file of the UniGene sp_v3.0_unigene8152

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative glucan endo-1,3-beta-glucosidase A6 [Arabidopsis thaliana] sp\|Q06915.1\|EA6_ARATH RecName: Full=Probable glucan endo-1,3-beta-glucosidase A6; AltName: Full=(1->3)-beta-glucan endohydrolase; Short=(1->3)-beta-glucanase; AltName: Full=Anther-specifi	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Glucan endo-1,3-beta-glucosidase, putative	-	-	4.399e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	4.501e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		4.501e-08	%

Source	Gene names
Sma3	A6; AT4g26830; At1g79480; At3g07320; At3g07320/T1B9_1; At3g23770; At4g14080; At4g26830; B29; BoA6; BrA6; F10M23.170; F21O3.3; GSVIVT00025946001; GSVIVT00033506001; Glu2; Gns9; LOC_Os03g62860; LOC_Os10g07290; NtEIG-E76; OJ1191_A10.121; OJ1353_F08.18; OJ161

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	X8	IPR012946	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14080.1	MEE48 O-Glycosyl hydrolases family 17 protein chr4:8118697-8120292 REVERSE LENGTH=478	45%
RefSeq	Arabidopsis thaliana	NP_193144.1	putative glucan endo-1,3-beta-glucosidase A6 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002298669.1	predicted protein, partial [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAN5

Fln msg: your sequence is longer than subject: 601 - 462

Fln protein: MNDRMPLYLLYVFYCLAIFVIPTEAGREWNSIGINYVRAGKNRLSPTEAVSLMKALKIGRVKLYDSDPEVLTALANSGLSVVIAVKNEEIPTVASSILNADEWVKQSVLAHYPATRINAITVGNEILTDYNNQDRWSKLVPAMQNIHSSLVRWNLNKRIKVTTTVAMDALNSSSAPSLARFRDDIAESVMKPLLRFMSNSKSFYFVNAYPYFAWAANANKVPVDYAIFGAAKEAVQDGGLKYTDMLSAQLDANLAAMEKLGYPHVKIAISETGWPASGGPGANVDLAATYNRRVVVRMLANPPLGTPRRPRTFVPTYLFALFDADNNKRGTTRNWGMLYPNGSQVYPIDMTDKLTDSEFESLKSIRPFPAQPTPIRSSISRSSPLTGSYPSPVPSYYSGPPILVNPPAASPSTDNIPFSSPIPSVHPNPHPTIHVPPYSPSPISTSLPTFPPPIANYPPHCMPYPPTTPITTPPFAPYPPSNPTVPYTPSPPPTTPYSPYPPSTPSTPSGQSLWCVAKPTVPNSVLQQAMNYACGAGADCKSIQPNGLCFSPDTMVAHASFAFNSYWQKNKGIGGTCDFGGTAMLITMDPSYEGCHFGLN*

Protein Length: 602

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTGGTTCCCAGAAGTTGGAGA_-_ATGAACGATAGAATGCCCCTCTATCTGCTCTATGTATTCTACTGTCTAGCTATATTCGTTATTCCAACTGAGGCTGGGAGAGAATGGAATTCTATTGGTATCAACTATGTTCGTGCAGGGAAAAATCGTCTCTCCCCTACCGAGGCTGTTTCACTCATGAAAGCCCTTAAAATAGGCAGAGTGAAGCTGTATGATTCTGACCCAGAAGTTCTCACTGCGTTGGCCAACTCGGGTCTTTCTGTTGTAATAGCTGTGAAGAATGAGGAGATTCCAACCGTTGCTTCCAGCATATTGAATGCTGATGAGTGGGTTAAACAAAGTGTTTTAGCACACTATCCTGCAACCAGAATTAATGCCATAACTGTTGGAAACGAAATCCTCACCGACTACAATAATCAGGATAGATGGTCTAAGCTGGTTCCTGCTATGCAGAACATTCACAGTTCACTTGTACGTTGGAATCTTAATAAAAGGATTAAGGTGACTACAACTGTAGCCATGGATGCTCTTAACTCCTCATCAGCTCCTTCTTTGGCAAGGTTCAGGGATGACATTGCAGAAAGTGTGATGAAACCTCTGCTACGCTTCATGTCCAATTCAAAATCCTTCTATTTTGTCAACGCTTATCCATATTTTGCATGGGCAGCCAATGCCAATAAAGTTCCTGTAGATTATGCTATATTTGGAGCAGCTAAGGAAGCAGTCCAAGATGGAGGATTGAAGTATACAGACATGCTTTCTGCTCAGTTGGATGCCAATTTAGCTGCCATGGAAAAATTGGGATACCCCCATGTGAAAATTGCAATTAGCGAAACAGGTTGGCCTGCATCAGGAGGTCCTGGAGCAAATGTTGATTTGGCAGCCACATACAACAGAAGGGTAGTTGTAAGAATGCTGGCAAATCCACCTTTGGGTACTCCTAGAAGGCCTAGAACTTTTGTACCCACTTATCTCTTTGCTCTATTTGATGCAGATAATAATAAACGTGGCACAACAAGAAACTGGGGTATGCTGTACCCAAATGGGTCTCAGGTATATCCCATAGACATGACTGACAAACTTACCGATTCGGAATTTGAATCCCTCAAGTCCATCAGGCCTTTCCCTGCCCAGCCAACTCCTATCCGCTCATCTATCAGTAGGTCTTCCCCTTTAACTGGGAGTTATCCAAGTCCTGTTCCCTCATATTACTCTGGTCCTCCTATATTAGTCAATCCTCCAGCGGCTTCACCCAGTACCGATAATATACCTTTCAGTTCCCCAATACCTTCTGTGCATCCTAATCCTCATCCAACTATCCATGTGCCACCATACTCACCATCTCCTATTTCTACAAGCCTTCCTACTTTTCCTCCTCCTATTGCAAACTATCCACCCCACTGTATGCCCTATCCTCCTACCACGCCTATTACTACGCCTCCATTTGCACCCTATCCACCTTCAAATCCCACAGTTCCATACACTCCTAGTCCCCCACCAACTACTCCCTACTCACCTTATCCTCCCAGCACACCATCTACACCGTCAGGTCAATCCCTCTGGTGTGTAGCAAAACCTACTGTGCCAAATTCAGTCTTGCAGCAGGCTATGAACTATGCATGTGGAGCGGGTGCTGACTGTAAATCTATCCAGCCAAACGGACTATGCTTTTCACCTGACACAATGGTTGCACATGCTTCTTTTGCTTTCAACAGCTATTGGCAAAAGAATAAAGGTATTGGTGGGACCTGTGATTTCGGAGGGACTGCCATGCTGATTACAATGGACCCAAGTTATGAAGGTTGCCACTTTGGTTTAAACTAA___GGAATAAACATTGAGTTATTCTCCAATATAGCAATTAAGGTCAAAATCATCACAATCTTCCTGTAAAACAGAATCTACAGATTTGCAGTTCAGTTTTGGGGATGTTCTGTCGAGGGAATCAGTGCATGCCAACTGGTTTTGTTCATAGCAGAAGTCATAACAAAGTGTTGTTACTGCACTGCAATATCTGGTTATTTTGTAGGGGTATTTCACAGGCTCTTAGGTTGGAATTTGAATCACTTGTGTGTGACTTTTATATCTTCACTCTTGCACACAAGAATTGTTCGGTGTATTATATCTTAGAGTTCTGTGACTAAGATTTTCATCATTAATATCTATTTTGTTACTCTTCAATATGTTTTGTCTCCAGTAAAATTGTAACCTGGTCAGAAAGTGGCAACTGTAATTTCTATAATAGTTGTTTATCTTATTTAATTGTAATCGATGACCACCATAAGAGATGGATGGA

Fln Alignment:

Contig8152___MPLYLLYVFYCL-AIFVIPTEAGREWNSIGINYVRAGKNRLSPTEAVSLMKALKIGRVKLYDSDPEVLTALANSGLSVVIAVKNEEIPTVASSILNADEWVKQSVLAHYPATRINAITVGNEILTDYNNQDRWSKLVPAMQNIHSSLVRWNLNKRIKVTTTVAMDALNSSSAPSLARFRDDIAESVMKPLLRFMSNSKSFYFVNAYPYFAWAANANKVPVDYAIFG-AAKEAVQDGGLKYTDMLSAQLDANLAAMEKLGYPHVKIAISETGWPASGG---PGANVDLAATYNRRVVVRMLANPPLGTPRRPRTFVPTYLFALFDADNNKR--GTTRNWGMLYPNGSQVYPIDMTDKLTDSEFESL
D5AAN5______________MPIPAPKVFWLLLAILGVIIHAYAEDYTIGVDYGQLGDNLPSTQEAIHLIQRMKAGRVKIYDTNPEILKALSHTGIKVSVMVKNEDIANVSSNQSFANKWVKNNVVYFYPATRINIILVGNEILSDYSNNQTWYQLVPAMLRIRRALLRYKLH-HIKVGTPLAMDVLNTSFPPSSGIFRDDVAETVMKPMLEFLSRTRSYFFIDVYPYFAWSSDSNNISLEYANFGDHDKNYTDPNGLVYTNLLDQQLDAVIAAMSKLGYEDIRLVIAETGWPNAGDLNQLGANIFNAAHYNRRIIRRMLADPPLGTPRRPNQFIPTYIFSLFN-ENQKTGLGTERHWGLLYPNGSRLYEIDLTGELQDSEYKPL

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
654	16			83	0.994512
679	80		20		0.995493
681			25	75	0.996473
1016	12		87		0.992554
1020		87		12	0.992554
1025	87		12		0.992554
1212	11		88		0.923564
1214			11	88	0.923564
1215	88			11	0.923564
1263	88	11			0.923564
1265		88	11		0.923564
1266	11	88			0.923564
1267			11	88	0.923564
1268	11	88			0.923564
1270	88			11	0.923564
1360	75			25	0.996473
1364			25	75	0.996473
1438		20		80	0.995493
1852	66			33	0.997452
1882	75	25			0.996473
1884		75		25	0.996473
1885	75	25			0.996473
1886	75		25		0.996473
1888			25	75	0.996473
1890	75	25			0.996473
1891		25	75		0.996473
1892			75	25	0.996473
1894		75	25		0.996473
1895	75		25		0.996473
1896	75	25			0.996473
1897	75			25	0.996473
1898	75		25		0.996473
1901	80	20			0.995493
1904	80		20		0.995493
1905		60		20	0.99255
1906	80		20		0.995493
1908		20		80	0.995493
1912		75	25		0.996473
1917	75	25			0.996473
1919	75	25			0.996473
1920	75			25	0.996473
2077	40			60	1.0
2190	84			15	0.999986
2191	18			81	0.999994
2203		37		62	1.0
2214			25	75	0.996473
2251		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain