SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8141

Length: 1629 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene8141 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os06g0130100 protein n=4 Tax=Oryza sativa RepID=Q7XB99_ORYSJ	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	Histone H1	-	-	6.355e-12	-

Source	Gene names
Sma3	AT2G26330; AT2G33170; AT5G07180; AT5G62230; AT5G63710; AT5G65700; At2g26330; At2g33170; At5g07180; At5g38560; At5g62230/mmi9_50; At5g63710; At5g65700; BISERK1; ER; ERECTA; ERECTA1; ERL1; ERL1a; ERL1b; ERL1c; ERL1d; ERL2; ERL2a; ERL2b; F6H11.170; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	stomatal complex morphogenesis	GO:0010103	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	regulation of cell adhesion	GO:0030155	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Histone H5	IPR005819	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR013091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G62230.1	ERL1 ERECTA-like 1 chr5:24996433-25002130 FORWARD LENGTH=966	57%
RefSeq	Arabidopsis thaliana	NP_001190595.1	LRR receptor-like serine/threonine-protein kinase ERL1 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002309461.1	leucine-rich repeat protein kinase [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK58

Fln msg: your sequence is longer than subject: 398 - 248

Fln protein: MGTHSSIVFACVHCCVLKSSRSCNSLRFSCDCILRIRAMASTAAENAPEEVVAVTTEEVVTAVPETKAEEPKAAKKAKAPKEKKPKAPKGSKPAPAHPPYFQMIKEAISALKEKGGSSPRAIAKYMEEKHKSVLPPNYKKMLAVQIKKLVLAGKLTKVKASFKLAEGAKKAPAKKPVKKTDSNPRIIHRDVKTSKILLDDNFEAHLSDFGIAKCIPSAKTHASTYVMGTIGYIDPEYARTLRLNEKSDVYSYGIVLLELLTGRKAVDNDSNLHQLILSKADNNMVMETVDPEVVATCIDLETVRKIFQLALLCTKRQPSDRPTMHDVARVLQSLLPASKQAPSSRVNQPAASNNYRRYLDEYTEGSHRDVRGSSTSSSTSDGQLFVRFGEVISQNIV*

Protein Length: 399

Fln nts: TAC_-_ATGGGGACTCATTCTTCGATCGTCTTCGCTTGTGTGCATTGTTGTGTGTTGAAGTCGTCACGTTCCTGCAATTCTCTGAGATTTTCTTGTGATTGCATTCTGCGAATCAGAGCCATGGCCTCCACAGCTGCCGAGAATGCACCTGAGGAAGTAGTTGCTGTTACCACCGAGGAAGTTGTTACCGCAGTTCCTGAAACAAAGGCCGAGGAGCCCAAGGCCGCCAAGAAGGCGAAGGCTCCCAAGGAAAAGAAGCCCAAGGCTCCCAAGGGATCCAAGCCTGCCCCCGCACATCCTCCATACTTCCAGATGATCAAAGAGGCGATCTCTGCCTTGAAGGAGAAGGGAGGTTCAAGTCCCAGGGCTATCGCTAAATACATGGAGGAGAAGCACAAGTCAGTTCTGCCCCCTAACTACAAGAAGATGCTCGCTGTACAGATAAAGAAGCTCGTTTTGGCTGGCAAGCTTACGAAGGTGAAAGCTTCTTTCAAGCTGGCCGAGGGAGCCAAGAAGGCTCCTGCAAAGAAGCCTGTCAAGAAGACTGACAGTAATCCACGTATTATTCACAGAGATGTAAAGACGTCCAAAATTCTCTTAGATGACAATTTTGAAGCGCATCTGTCAGATTTTGGTATTGCCAAGTGTATCCCTTCTGCAAAAACCCATGCTTCTACCTATGTTATGGGCACCATTGGTTACATTGACCCTGAATATGCAAGGACGTTGAGGCTCAACGAGAAATCCGATGTGTACAGCTATGGCATTGTTCTTTTGGAGCTACTGACTGGGAGAAAAGCTGTGGATAATGATTCTAATTTACATCAGTTGATTCTCTCTAAAGCAGACAACAACATGGTCATGGAAACTGTTGACCCGGAAGTAGTAGCAACCTGCATAGATCTTGAGACTGTAAGAAAGATCTTCCAGCTTGCACTGCTTTGCACAAAGAGACAGCCATCAGACCGTCCCACCATGCATGATGTTGCTAGGGTTTTACAGTCATTATTGCCAGCTTCTAAACAAGCTCCAAGTAGCAGAGTAAACCAACCAGCAGCCAGTAACAACTACAGGAGATACTTGGATGAGTACACTGAAGGAAGTCATAGAGATGTTAGGGGCAGCAGCACAAGCAGCAGCACTTCTGATGGGCAATTATTTGTGAGATTTGGTGAGGTTATTTCACAGAACATTGTTTGA___CAGAAACCTTTGGATTGAGCTCATGATCAAAAGTGTATCGTATTGTTGAATTCTACCTTCAGTGCAGTCATTTCATAAAAACTTAAATTTTGTAGTTTTGGGTTTTCAACAAAGTCAGCTGCCGAAAGTCTGGACTTGTTAATACAAGATTACATTGCCAAATAAACAAACCATATATGGCATGCAGTTGAAGTTGTACCCAAACATTAACTTAACGAGGTGTGAAACTTTAAATTGCTGCAAGACAGATGGTGAGAGAAGCTTTTGTTGCACCACACCCCAAGATAGAAATGCCTGTTGTTTGAATTGAAGTCCTCCCCTTCTGTCATAGCACGGCAGCAATATATACAGTTGCGATATGTTAATTATGGATGCTTGTACACGAATATTATATGTTTTACAATGAATGCGGAATTTTAACTGAGTTTTGTG

Fln Alignment:

Contig8141___YFQMIKEAISALKEKGGSSPRAIAKYMEEKHKSVLPPNYKKMLAVQIKKLVLAGKLTKVKASFKLAEG
A9NK58______________YFQMIKEAISALKEKGGSSPRAIAKYMEEKHKAVLPPNYKKMLAVQIKKLVLAGKLTKVKASFKLAEG

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
857		68		31	1.0
965	90		10		0.90298
1012	25		75		0.996473
1015			75	25	0.996473
1030		66	33		0.997452
1032			33	66	0.997452
1033		66		33	0.997452
1034			33	66	0.997452
1038	66	33			0.997452
1039		33	66		0.997452
1041	66	33			0.997452
1042	33		33	33	0.997753
1043	33		33	33	0.997753
1621		9	90		1.0
1622	90	9			1.0
1623	9		90		1.0
1625		64	8		1.0
1626	8	91			0.999766
1630			4	72	1.0
1631	20	40	40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain