SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8133

Length: 2379 nt

UniGene Fasta

>sp_v3.0_unigene8133
CACATGAGAAACATCTAGAACTTTTGGAGTCGCTTGTGCATAATATAAAATCAATCGCTTCCCCCTCTTCATGGGGCTAGCCGTTTCATTGGTTGTTTGCTAAGAATTCAGAGTGTCATACTGCGCATCTGTTTGGCTTCCGATTCTGTTTATCTTCGTAACATTTCAAGTGTGTAATCTTCATCAGCAACGTTGCAATGGCGGACGATTTTGAACTTCCTGAAGGTGCTGGAATGATGGAAAACGAGGACTTTGGCGATACTGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGGAAGCAGGGGTTGAAGAAATTGTTGGTTAAAGAAGGGGAATCGTGGGAAACACCCGAAACCGGTGATGAAGTTGAAGTTCATTACACCGGAACTCTTCTGGACGGTACAAAGTTCGATTCTAGTCGGGATAGAGGAACTCCGTTCAAGTTCAAGCTTGGTCAAGGTCAAGTAATCAAAGGATGGGATCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCAGTCTTCACCATTCCTCCTGATCTGGCATATGGGGAATCGGGATCGCCACCTACAATTCCACCCAATGCGACTCTGAAATTTGATGTTGAATTGCTCTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGGGGCATTTTTAAGAAAATTATCAAGGAAGGGGAGAAATGGGAGCACCCAAAAGAAGCTGATGAAGTTTTGGTTAAATACGAGGCTAGACTGGAGGACAGAACTGTTGTATCAAAATCAGAGGAGGGTGTGGAGTTTTATGTAAAGGATGGATATTTCTGTCCAGCTTTTGCCATAGCTGTCAAAACAATGAAGAAGGGAGAAAAAGTATTGTTGACAGTGAAGCCTCAGTATGGTTTTGGACATCAAGGACGCGAAGCAATTGGAAATGATGTTGCCGTTCCACCAAATGCAACATTGTTGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTTACTGATGATAAGAAAGTGCTGAAGAAAATCCTGAAGCAAGGAGAAGGTTATGAACGACCTAATGATGGGGCAGTGGTTAAAGTGAAATACACGGGGAAGTTAGAGGATGGCACCATATTTGAGGAAAAGGGATCTGATGAAGAACCATTTGAGTTTATGGCTGGAGAAGAGCAAGTTGTTGATGGATTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAACTTGCCTTGGTGAGTGTGGCAGCTGAATATGGTTACCAAACTGAGATTAAGACAGACTTGGCAGTTGTTCCACCAAAGGCCACCTTGATTTATGAAGTGGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGAACACCGAGGAGAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGCAATGCATTATTTAAGGTTGGCAAGTATTTTAGGGCTTCCAAGAAATATGAAAAGGCTGCAAAGTATATTGAGTATGACACTTCATTCAGCGAGGAAGAGAAGAAGCAGTCGAAGCCCTTGAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACACAAGCAGAAAAATTATGTACAAAGGTTTTGGAGGTTGAATCGCAAAATGTTAAGGCTTTATATAGAAGAGCACAAGCATACATTCAGACAGCAGATTTGGAGCTCGCAGAGCTGGACATAAAGAAAGCACTCGAGATTGACCCAAACAACAGGGATGTGAAGCTCGAGTACAGGGCTCTCAAAGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTTTATGGCAACATGTTTGCAAGAATGAGCAAGTTGGAGGAATTAGAAAGCAGGAAATCTGGGAGCCAAAAAGTGGAGACAGCTAATAAAGAGGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTGCCTGAAGTGCTTTTGCAATAGCGATATATTTCTATGCAGTCCTTTATAGACGAGTCTACCTTTTAGCCATTCACAATGAAGATTGTAAGTCGGGTGAACTTTTTAACCACGCTAGGTTGATCTATTTGAAGACTCTTTTGCAAGATGCTTGTGCATTCATAGCAAAATTGTATGAGGGACTGGCAAGCTGAATTTGCTTGAAAGTGATGAAAGAGGTTGTATTCTTGAAGTATTGCTTTGCTCTTAATCTAATTGGCTTAGGTAATGAAGCTCTTGGTTTTTGTTGAATAATATGAAGCATGAATGTCACAACTGCATTGATAACGTTAGGCTGTGATGTTTGAAATGAAGCCGGACACATAATTTCTTTATTGCAAAATTTCGATGCTCTGAATGGGTTTAAAGTTCATTTTAATATATAGCATAAGCAAATATGTTGTACCGTTTACC

Ace file of the UniGene sp_v3.0_unigene8133

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-prolyl isomerase n=1 Tax=Zea mays RepID=B6TI78_MAIZE	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-
Sma3	protein folding	GO:0006457	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G25230.2	ROF1, ATFKBP62, FKBP62 rotamase FKBP 1 chr3:9188257-9191175 FORWARD LENGTH=562	74%
RefSeq	Arabidopsis thaliana	NP_189160.3	rotamase FKBP 1 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002301809.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUZ0

Fln msg:

Fln protein: MADDFELPEGAGMMENEDFGDTVFKVGEEKEIGKQGLKKLLVKEGESWETPETGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGQGQVIKGWDQGIATMKKGENAVFTIPPDLAYGESGSPPTIPPNATLKFDVELLSWASVKDICKDGGIFKKIIKEGEKWEHPKEADEVLVKYEARLEDRTVVSKSEEGVEFYVKDGYFCPAFAIAVKTMKKGEKVLLTVKPQYGFGHQGREAIGNDVAVPPNATLLVDLELVSWKVVDEVTDDKKVLKKILKQGEGYERPNDGAVVKVKYTGKLEDGTIFEEKGSDEEPFEFMAGEEQVVDGLDRAVMTMKKGELALVSVAAEYGYQTEIKTDLAVVPPKATLIYEVELVSFVKEKESWDMNTEEKIEAAGKKKEEGNALFKVGKYFRASKKYEKAAKYIEYDTSFSEEEKKQSKPLKVTCNLNNAACKLKLKDYTQAEKLCTKVLEVESQNVKALYRRAQAYIQTADLELAELDIKKALEIDPNNRDVKLEYRALKEKQKEYNKKEAKFYGNMFARMSKLEELESRKSGSQKVETANKEEGSDAMAVDGESA*

Protein Length: 580

Fln nts: CACATGAGAAACATCTAGAACTTTTGGAGTCGCTTGTGCATAATATAAAATCAATCGCTTCCCCCTCTTCATGGGGCTAGCCGTTTCATTGGTTGTTTGCTAAGAATTCAGAGTGTCATACTGCGCATCTGTTTGGCTTCCGATTCTGTTTATCTTCGTAACATTTCAAGTGTGTAATCTTCATCAGCAACGTTGCA_-_ATGGCGGACGATTTTGAACTTCCTGAAGGTGCTGGAATGATGGAAAACGAGGACTTTGGCGATACTGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGGAAGCAGGGGTTGAAGAAATTGTTGGTTAAAGAAGGGGAATCGTGGGAAACACCCGAAACCGGTGATGAAGTTGAAGTTCATTACACCGGAACTCTTCTGGACGGTACAAAGTTCGATTCTAGTCGGGATAGAGGAACTCCGTTCAAGTTCAAGCTTGGTCAAGGTCAAGTAATCAAAGGATGGGATCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCAGTCTTCACCATTCCTCCTGATCTGGCATATGGGGAATCGGGATCGCCACCTACAATTCCACCCAATGCGACTCTGAAATTTGATGTTGAATTGCTCTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGGGGCATTTTTAAGAAAATTATCAAGGAAGGGGAGAAATGGGAGCACCCAAAAGAAGCTGATGAAGTTTTGGTTAAATACGAGGCTAGACTGGAGGACAGAACTGTTGTATCAAAATCAGAGGAGGGTGTGGAGTTTTATGTAAAGGATGGATATTTCTGTCCAGCTTTTGCCATAGCTGTCAAAACAATGAAGAAGGGAGAAAAAGTATTGTTGACAGTGAAGCCTCAGTATGGTTTTGGACATCAAGGACGCGAAGCAATTGGAAATGATGTTGCCGTTCCACCAAATGCAACATTGTTGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTTACTGATGATAAGAAAGTGCTGAAGAAAATCCTGAAGCAAGGAGAAGGTTATGAACGACCTAATGATGGGGCAGTGGTTAAAGTGAAATACACGGGGAAGTTAGAGGATGGCACCATATTTGAGGAAAAGGGATCTGATGAAGAACCATTTGAGTTTATGGCTGGAGAAGAGCAAGTTGTTGATGGATTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAACTTGCCTTGGTGAGTGTGGCAGCTGAATATGGTTACCAAACTGAGATTAAGACAGACTTGGCAGTTGTTCCACCAAAGGCCACCTTGATTTATGAAGTGGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGAACACCGAGGAGAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGCAATGCATTATTTAAGGTTGGCAAGTATTTTAGGGCTTCCAAGAAATATGAAAAGGCTGCAAAGTATATTGAGTATGACACTTCATTCAGCGAGGAAGAGAAGAAGCAGTCGAAGCCCTTGAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACACAAGCAGAAAAATTATGTACAAAGGTTTTGGAGGTTGAATCGCAAAATGTTAAGGCTTTATATAGAAGAGCACAAGCATACATTCAGACAGCAGATTTGGAGCTCGCAGAGCTGGACATAAAGAAAGCACTCGAGATTGACCCAAACAACAGGGATGTGAAGCTCGAGTACAGGGCTCTCAAAGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTTTATGGCAACATGTTTGCAAGAATGAGCAAGTTGGAGGAATTAGAAAGCAGGAAATCTGGGAGCCAAAAAGTGGAGACAGCTAATAAAGAGGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTGCCTGA___AGTGCTTTTGCAATAGCGATATATTTCTATGCAGTCCTTTATAGACGAGTCTACCTTTTAGCCATTCACAATGAAGATTGTAAGTCGGGTGAACTTTTTAACCACGCTAGGTTGATCTATTTGAAGACTCTTTTGCAAGATGCTTGTGCATTCATAGCAAAATTGTATGAGGGACTGGCAAGCTGAATTTGCTTGAAAGTGATGAAAGAGGTTGTATTCTTGAAGTATTGCTTTGCTCTTAATCTAATTGGCTTAGGTAATGAAGCTCTTGGTTTTTGTTGAATAATATGAAGCATGAATGTCACAACTGCATTGATAACGTTAGGCTGTGATGTTTGAAATGAAGCCGGACACATAATTTCTTTATTGCAAAATTTCGATGCTCTGAATGGGTTTAAAGTTCATTTTAATATATAGCATAAGCAAATATGTTGTACCGTTTACC

Fln Alignment:

Contig8133___MADDFELPEGAGMMENEDFGDTVFKVGEEKEIGKQGLKKLLVKEGESWETPETGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGQGQVIKGWDQGIATMKKGENAVFTIPPDLAYGESGSPPTIPPNATLKFDVELLSWASVXXXXXXXXXXXXXXXXXXXWEHPKEADEVLVKYEARLEDRTVVSKSEEGVEFYVKDGYFCPAFAIAVKTMKKGEKVLLTVKPQYGFGHQGREAIGNDVAVPPNATLLVDLELVSWXXXXXXXXXXXXXXXILKQGEGYERPNDGAVVKVKYTGKLEDGTIFEEKGSDEEPFEFMAGEEQVVDGLDRAVMTMKKGELALVSVAAEYGYQTEIKTDLAVVPPKATLIYEVELVSFVKEKESWDMNTXXXXXXXXXXXXXXNALFKVGKYFRASXXXXXXXXXXXXDTSFSEEEKKQSKPLKVTCNLNNAACKLKLKDYTQAEKLCTKVLEVESQNVKALYRRAQAYIQTADLELAELDIKKALEIDPNNRDVKLEYRALKEKQKEYNKKEAKFYGNMFARMSKLEELESRKSGSQKVETANKEEGSDAMAVDGE
A9NUZ0______________MEDDFELPEGAGLMENEDLNETVFKVGEEKEIGKQGLKKLLVKEGEGWETPETGDEVEVHYTGTLLDSTKFDSSRDRGTPFKFKLGQGQVIKGWDQGIATMKKGETAVFTIPPEMAYGESGSPPTIPPNATLKFDVELLSWASVKDICKDGGIFKKIIKEGEKWENPKEADEVLVKYEARLEDGTVVSKSEEGVEFYVKDGYFCPAFAKAVKTMKKGEKVLLTVKPQYGFGHKGRQAIGNDVAVPPNATLMVDLELVSWKVVDEVTDDKKVLKKILKQGEGYERPNDGAVAKVKYTGKLEDGTVFEKKGSDEEPFEFMTGEEQVVDGLDRAVMTMKKGEVALVTVAAEYGYETEIKTDLAVVPPKSTLIYDVELVSFVKEKESWDMSTAEKIEAAGKKKEEGNALFKVGKYFRASKKYKKAAKYIEYDTSFSEEEKKQSKPLKITCNLNNAACKLKLKDYTQAEKLCTKVLEIESQNVKALYRRAQSYIQTADLELAEIDIKKALEIDPNNRDVKLEYRALKEKQKEYNKKEAKFYGNMFARMSKLEELESRKSGSQKVETVDKVEGSDAMAVNGD

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
239			42	57	1.0
384		90		10	0.90298
489		14	85		0.993533
629		12		87	0.992554
648		12		87	0.992554
674	87			12	0.992554
714	88		11		0.923564
721	10		90		0.90298
723			10	90	0.90298
724	90		10		0.90298
725	90		10		0.90298
785	15			84	0.999986
786	15			84	0.999986
788	84		15		0.999986
804		15		84	0.999986
1082	81			18	0.999994
1227			83	16	0.999991
1868	76		7		0.999983
1877	76			23	1.0
2160	2		97		0.974293
2193		3		96	0.993037
2231			9	90	1.0
2251	92		7		0.999532
2255	7	92			0.999532
2256	7		92		0.999532
2257	7			92	0.999532
2258	7			92	0.999602
2281	12		87		0.999964
2282	12	87			0.999964
2283	12	87			0.999964
2284	12		87		0.999964
2362	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain