SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8127

Length: 1461 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8127

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable pyridoxal biosynthesis protein PDX1 n=2 Tax=Spermatophyta RepID=PDX1_GINBI	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Pyridoxine biosynthesis protein	-	-	1.796e-15	-

Source	Gene names
Sma3	A37; At2g38210; At2g38230; At3g16050; At5g01410; B1026C12.3; B1151A10.28; ER1; F16M14.14; F16M14.16; GIP2; GSVIVT00024095001; GSVIVT00034397001; LOC_Os07g01020; LOC_Os10g01080; LOC_Os10g08220; LOC_Os10g08960; LOC_Os10g11520; LOC_Os11g48080; MICPUCDRAFT_24

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endomembrane system	GO:0012505	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	ribonuclease activity	GO:0004540	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to lipid hydroperoxide	GO:0006982	Biological Process	-
Sma3	tRNA processing	GO:0008033	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	pyridoxine biosynthetic process	GO:0008615	Biological Process	-
Sma3	thiamine biosynthetic process	GO:0009228	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	response to non-ionic osmotic stress	GO:0010335	Biological Process	-
Sma3	chlorophyll metabolic process	GO:0015994	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Vitamin B6 biosynthesis protein	IPR001852	-	-
Sma3	Ribonuclease P/MRP protein subunit	IPR002759	-	-
Sma3	Thiazole biosynthesis	IPR008867	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Indole-3-glycerol phosphate synthase	IPR013798	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G01410.1	PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 Aldolase-type TIM barrel family protein chr5:172576-173505 REVERSE LENGTH=309	56%
RefSeq	Arabidopsis thaliana	NP_195761.1	Pyridoxal biosynthesis protein PDX1.3 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002299701.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8T3

Fln msg:

Fln protein: MSGSGNAGVVALLECGSSDSKKSSSYAMKVTLAQMLRGGVIVNVNNPRQARIAEEAGAVAVTAAGPLGDAVNRMIDPGLVRRIKKSVSIPVISRARIGHFVEAQILEAVGVDFIDESETLTPADDSNFTNKHNFRCPFVCGCRDLGEALRRIAEGAAMVRTAGNGSDNVAEAVGNLRSVLGQVRRLQIIDEDELYAFAKGINAPFELVKLTKQLGRLPVIVFGFGGIATPADAAMLMQIGCDGVFVDSSVFDCEDPASRVQAFVEAVAHYNDSHILAKVSSSMADLDINYKDLVQTQQTRSSD*

Protein Length: 305

Fln nts: GCATCCAGAACACTCTAGACAAACCGACCACCTTTATACATAGCATCGCCATTCCTCTTTCATGGGCACACCCAAGTTGAAGATTCAAGCCATTTCTGTGAGAAATCCAATTCTCCGAGAAATTTTCCCCGAGTTTCGAACGCCCAACCTGTGCCTACA_-_ATGTCTGGGAGTGGAAATGCCGGTGTGGTGGCCTTGCTGGAATGTGGGAGCAGCGATTCGAAGAAATCTTCGTCATATGCTATGAAAGTTACCTTGGCCCAGATGCTCCGGGGCGGTGTGATCGTCAATGTGAATAATCCCAGGCAGGCTCGAATCGCAGAAGAGGCTGGAGCCGTAGCAGTGACAGCGGCGGGGCCGCTTGGGGACGCCGTTAACAGAATGATCGATCCGGGTCTGGTTCGGCGGATCAAGAAATCCGTCAGTATTCCTGTCATATCCCGTGCCCGAATCGGCCATTTCGTGGAGGCCCAGATCTTGGAAGCCGTGGGCGTGGATTTCATTGATGAGAGCGAGACTCTGACGCCGGCAGATGATTCTAATTTTACAAACAAACACAATTTCCGGTGTCCATTTGTCTGCGGCTGCCGGGACCTTGGGGAGGCCCTGCGTCGTATTGCGGAGGGCGCGGCGATGGTGAGGACGGCCGGGAATGGATCCGACAATGTGGCGGAGGCCGTCGGAAACTTGCGCTCGGTGCTCGGGCAGGTCAGGAGGCTGCAGATTATCGACGAGGATGAGCTTTACGCGTTCGCGAAGGGGATAAACGCCCCTTTCGAATTGGTGAAATTGACGAAGCAATTGGGGCGTTTGCCGGTGATTGTGTTTGGGTTTGGAGGGATCGCGACCCCAGCAGATGCAGCCATGTTGATGCAAATTGGGTGCGATGGGGTTTTTGTGGATTCTTCTGTCTTCGATTGTGAGGATCCGGCGTCGCGTGTTCAGGCATTCGTCGAGGCTGTGGCGCATTATAATGATTCGCATATTCTGGCGAAGGTTAGTTCCAGCATGGCCGACCTGGATATTAACTATAAGGATTTAGTTCAGACCCAGCAAACAAGGTCTTCGGATTGA___TCTTCATTAGAATTCTATGGTAACAATTTAATTCGATGAAGATGTTGTTTGTTGAATATTGTTGAGAAAATAAGAAGTGGTGGCCTGTTGTCTCCGGTAAGGGTCGATTAATGGGGTTTTTATTATAGGGTTTTGGCTGGCATTTAGGGTTTTTAGGGCGAGCAGGCTGCATTTAACTCTTTTTCTGTTCTTTGTAATTATCGGTGGGTTTTAGGTTGGGATGCTATTCAATGGGTTTTAAGAAAAATGCAGAATTATGAGAATCTTATTCCCTAGTTGTAATCATTTCTCCATTCTGAAAGGGGTTAAATTTTGCAATCTTCTTTTCAATTGTTTCACAATGTTTACCTGGAAATCTTTTTATCTTGCGTTTGATTAGTTGGACTCTTG

Fln Alignment:

Contig8127___GVVALLECGXXXXXXXXXYAMKVTLAQMLRGGVIVNVNNPRQARIXXXXXXXXXXXXXPLG------DAVNRMIDPGLVRRIKKSVSIPVISRARIGHFVEAQILEAVGVDFIDESETLTPADDSNFTNKHNFRCPFVCGCRDLGEALRRIAEGAAMVRTAGN-GSDNVAEAVGNLRSVLGQVRRLQIIDEDELYAFAKGINAPFELVKLTKQLGRLPVIVFGFGGIATPADAAMLMQIGCDGVFVDSSVFDCEDPASRVQAFVEAVAHYNDSHILAKVSSSMAD--LDINYKD
D5A8T3______________GVVTVYGNGAITDPKKSSYAVKVGLAQMLRGGVIMDVVNVEQAKIAEEAGATAVMALERVPADIRAQGGVARMSDPGLIKEIKRAVTIPVMAKARIGHFVEAQILEAIGIDYIDESEVLTVADDMHHINKHNFRMPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFTFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDPHVLAEVSCDLGEAMVGINLND

SNPs (tot: 3)

Position	C %	G %	T %	Probability
928		83	16	0.999991
1262		25	75	0.996473
1286	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain