SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8113

Length: 2731 nt

UniGene Fasta

>sp_v3.0_unigene8113
ATGGGGCTCCTGTACCTCATATGGCCGTGGTGCTCATTGTAGGGTTTGAATTTTGACAGTTGTCGCCATTTGTTATTTCCATTTGAGAGCAGGGTTGTTTTATCAGTGGTATTTTGTGTTTGCGCAGAACAGAAGGTTTGAAGATAAGGATACTGTAATTTGGCTGAAGGCTTTGGAGCCTTCGTAGCGGTGTTGAAAGCTTACAGGGGTTTGATAATTTTACCAGACATTTGACGCGTTGGTAATTATATAGGGTTCGCATTTTGCCGGGTCTGATAGATTCGGTCGTTATTCTTTTTATTGTGACTTGAAGCTCACGAGGGTTGATTGTGAACTTCAATACATTTTACCCAATTTGAGCGTTTAAGGGTGTGAAGCCTACAGGGTTTAATATTCTGTGGTCTGGTTGAGTCATTGGGTGTTTGCATCTCAAAGGGTTTGGTGTTTTAGGCCTTTTGAGCTTTCAGGGTTTGAACATTTCAGGTCTCGATAATTTCCGTTGCTGAAAGCTCCGAGTTTGAAGCTTGGGTAGAATGGGTTCCATAGCTGGCCAGCCGCAGTTCCGGTACACTCAACCACCATCGAAGGTTCTGCACCTTAGAAATTTGCCGTGGGAGTGCACAGAGGAAGAGCTTATTGAACTGGGGAAGCCGTTCGGGAAAATTGTCAACACCAAGGTTAATGTTGGATCGAATCGCAACCAGGCGTTTGTGGAATTTGCGGATTTGAATCAAGCTATTGCAATGGTTTCATATTATGCTTCATCGCCAGAACAGGCTCAGGTACGCGGCAAAACTGTGTACCTACAATACTCCAATAGGCATGAAATCGTCAACAGCAAGAATTCCGGGGATGAAGCAAGCAATGTATTGCTGGTGACAATTGAGGGTGTAGAAGCTGGTGATGTCAGCATAGATGTTCTGCATTTGGTATTCTCAGCATTTGGTTTTGTACATAAAATTGCCACTTTTGAAAAAAGTGCTGGTTTTCAGGCACTGGTGCAGTTTAGTGATTTAGATACAGCATCCTCTGCAAGATCTGCTTTAGATGGAAGAAGCATTCCAAGGTATTTACTAGCGGAACATGTTGGGCCATGTCACCTGCGAATTTCGTTTTCTGCTCACACTGACTTGAATGTCAAATTCCAGAGTCATCGAAGCAGGGATTATACAAATCCAAATTTGCCTGTTGCCCCTTCTGCCATAGATGGAACTGGGCAGTTTGGCATTGGGCCTGATGGGCAAAGAAGAGAGCCAGAGAGTAATGTTCTTCTTGCATCTATTGAAAACATGCTATATGCTGTAACTGTTGATGTTTTGCATACGGTATTCTCAGCATTTGGTACAGTTCAGAAAATTGCAATGTTTGAGAAGAATGCAGGATGGCAGGCTTTAATTCAGTATGCAGATATACCAACTGCAGTAGTTGCCAAAGAGGCATTAGAAGGACATTCTATATATGACGGAGGCTATTGCAAACTACACCTCTCTTATTCACGCCACACAGACCTCAATGTTAAGGTTAATAATGATCGGAGCAGAGACTACACACTTCCAAAAGTAGGCGTTTTACAAAATCAACTGCCACTTATTGGTCAGCAGCTCTCTAGTCTGCCTGCTGGAGTTGGTGGACAGCCTCCATCTGCACCATATATGTATCCAGGGAATCATTTTGTGTCTGGTGTGCATCCACCACAACCAGCTAGTATGGCTGGACCTGTATCACAAACAACGGGATCACTGATTCAAGGAACTGCACCAAATCAAATTTACATGACCTCCCCTGCTCAGCTTGCCACATCATTAGGCATGTCCTCAGGATTTCCAGGACAAGCTCAGTTGTCAGTTCCACCTTACTCTTCTGCTACATATTTCTCAGGCCCTACTCCCATGCAGAATCCCGGACATTATACAAGCCCTATGGGTTCAGGTATGCCACCGCTAGCCAGTCAGAATCCTCATGGTGGCACAGCTTTTCCAATGCCTGCATACAGACAGCAGCCAATGCATATGCAAACGCCTGTGGGAAGAGTTCCTGCAAGTGCTTCTTCGACGTACTATATATAAATATCTGTGTAGCATTCCTCTGCCTCTCAGAAGCTGTTATTGGTATTGCTGTTTAAACGCCACTACATTTTATGGAGCGTTGGACCGAATCAGTCTTTAAATGAATCATGCATTGAGCATACTTATCGATTCTCCCCGTGCTGTGTTCAGACGGCCATGCCTTTTATGTTCTGGTATCTTTTTGTAAAATACTTTTTTTAATACTTAATTTCTTTGTGGTATTCCACAGTTGCATTGTTGTTACTGTAAACAGATTGTAATAGTTTCCAGCCGGAGATGAAATTATATGAAAGGCAGCCAGATTTGATGAATTAAATGGGCATCTTGGTGATTTAATTGTATTCAATTTCATTATATTCAACGAAGATGAGAATTTGGAAAATTTTCACCAAATCAGATGGCAAGAAACATTGAAGAGTGACCGACTTGGTAAGAAACATCGAAGAGTGACCACAGTCTCTCACCACTGCACTTTTCAGTGCACTATATCCCTAAAAGGATGTAAATGATGGGATCGACGAGGCTTGAACCCACGATTACATCGTGACAAGGTGGTGTTCTAACTAATTGAACTACACTCTCGATACAGTGTAATTTAATTTAGTGTGACACTTAATTCTCTCGAGCCTTGTTTAATAATAATAACAAGAATATAATCCGATGTT

Ace file of the UniGene sp_v3.0_unigene8113

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	polypyrimidine tract-binding protein 2 [Arabidopsis thaliana] sp\|Q9FGL9.1\|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2 dbj\|BAB08421.1\| polypyrimidine tract-binding RNA transport protein-like [Arabidopsis thaliana] gb\|AAU90050.1	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Putative polypyrimidine tract-binding protein	-	-	9.453e-09	-

Source	Gene names
Sma3	At3g01150; At5g53180; B1040D09.15-1; B1040D09.15-2; GSVIVT00006509001; GSVIVT00020992001; GSVIVT00020993001; LOC_Os03g25980; MFH8.12; OSJNBb0048D20.1; Os01g0619000; Os03g0376900; Os08g0436000; OsI_02887; OsI_02889; OsI_11790; OsI_29352; OsJ_02633; OsJ_110

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-
Sma3	pollen germination	GO:0009846	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G53180.1	ATPTB2, PTB2 polypyrimidine tract-binding protein 2 chr5:21568393-21571537 REVERSE LENGTH=429	65%
RefSeq	Arabidopsis thaliana	NP_200130.1	polypyrimidine tract-binding protein 2 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002324068.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA11

Fln msg:

Fln protein: MGSIAGQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKIVNTKVNVGSNRNQAFVEFADLNQAIAMVSYYASSPEQAQVRGKTVYLQYSNRHEIVNSKNSGDEASNVLLVTIEGVEAGDVSIDVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDLDTASSARSALDGRSIPRYLLAEHVGPCHLRISFSAHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGTGQFGIGPDGQRREPESNVLLASIENMLYAVTVDVLHTVFSAFGTVQKIAMFEKNAGWQALIQYADIPTAVVAKEALEGHSIYDGGYCKLHLSYSRHTDLNVKVNNDRSRDYTLPKVGVLQNQLPLIGQQLSSLPAGVGGQPPSAPYMYPGNHFVSGVHPPQPASMAGPVSQTTGSLIQGTAPNQIYMTSPAQLATSLGMSSGFPGQAQLSVPPYSSATYFSGPTPMQNPGHYTSPMGSGMPPLASQNPHGGTAFPMPAYRQQPMHMQTPVGRVPASASSTYYI*

Protein Length: 512

Fln nts: ATGGGGCTCCTGTACCTCATATGGCCGTGGTGCTCATTGTAGGGTTTGAATTTTGACAGTTGTCGCCATTTGTTATTTCCATTTGAGAGCAGGGTTGTTTTATCAGTGGTATTTTGTGTTTGCGCAGAACAGAAGGTTTGAAGATAAGGATACTGTAATTTGGCTGAAGGCTTTGGAGCCTTCGTAGCGGTGTTGAAAGCTTACAGGGGTTTGATAATTTTACCAGACATTTGACGCGTTGGTAATTATATAGGGTTCGCATTTTGCCGGGTCTGATAGATTCGGTCGTTATTCTTTTTATTGTGACTTGAAGCTCACGAGGGTTGATTGTGAACTTCAATACATTTTACCCAATTTGAGCGTTTAAGGGTGTGAAGCCTACAGGGTTTAATATTCTGTGGTCTGGTTGAGTCATTGGGTGTTTGCATCTCAAAGGGTTTGGTGTTTTAGGCCTTTTGAGCTTTCAGGGTTTGAACATTTCAGGTCTCGATAATTTCCGTTGCTGAAAGCTCCGAGTTTGAAGCTTGGGTAGA_-_ATGGGTTCCATAGCTGGCCAGCCGCAGTTCCGGTACACTCAACCACCATCGAAGGTTCTGCACCTTAGAAATTTGCCGTGGGAGTGCACAGAGGAAGAGCTTATTGAACTGGGGAAGCCGTTCGGGAAAATTGTCAACACCAAGGTTAATGTTGGATCGAATCGCAACCAGGCGTTTGTGGAATTTGCGGATTTGAATCAAGCTATTGCAATGGTTTCATATTATGCTTCATCGCCAGAACAGGCTCAGGTACGCGGCAAAACTGTGTACCTACAATACTCCAATAGGCATGAAATCGTCAACAGCAAGAATTCCGGGGATGAAGCAAGCAATGTATTGCTGGTGACAATTGAGGGTGTAGAAGCTGGTGATGTCAGCATAGATGTTCTGCATTTGGTATTCTCAGCATTTGGTTTTGTACATAAAATTGCCACTTTTGAAAAAAGTGCTGGTTTTCAGGCACTGGTGCAGTTTAGTGATTTAGATACAGCATCCTCTGCAAGATCTGCTTTAGATGGAAGAAGCATTCCAAGGTATTTACTAGCGGAACATGTTGGGCCATGTCACCTGCGAATTTCGTTTTCTGCTCACACTGACTTGAATGTCAAATTCCAGAGTCATCGAAGCAGGGATTATACAAATCCAAATTTGCCTGTTGCCCCTTCTGCCATAGATGGAACTGGGCAGTTTGGCATTGGGCCTGATGGGCAAAGAAGAGAGCCAGAGAGTAATGTTCTTCTTGCATCTATTGAAAACATGCTATATGCTGTAACTGTTGATGTTTTGCATACGGTATTCTCAGCATTTGGTACAGTTCAGAAAATTGCAATGTTTGAGAAGAATGCAGGATGGCAGGCTTTAATTCAGTATGCAGATATACCAACTGCAGTAGTTGCCAAAGAGGCATTAGAAGGACATTCTATATATGACGGAGGCTATTGCAAACTACACCTCTCTTATTCACGCCACACAGACCTCAATGTTAAGGTTAATAATGATCGGAGCAGAGACTACACACTTCCAAAAGTAGGCGTTTTACAAAATCAACTGCCACTTATTGGTCAGCAGCTCTCTAGTCTGCCTGCTGGAGTTGGTGGACAGCCTCCATCTGCACCATATATGTATCCAGGGAATCATTTTGTGTCTGGTGTGCATCCACCACAACCAGCTAGTATGGCTGGACCTGTATCACAAACAACGGGATCACTGATTCAAGGAACTGCACCAAATCAAATTTACATGACCTCCCCTGCTCAGCTTGCCACATCATTAGGCATGTCCTCAGGATTTCCAGGACAAGCTCAGTTGTCAGTTCCACCTTACTCTTCTGCTACATATTTCTCAGGCCCTACTCCCATGCAGAATCCCGGACATTATACAAGCCCTATGGGTTCAGGTATGCCACCGCTAGCCAGTCAGAATCCTCATGGTGGCACAGCTTTTCCAATGCCTGCATACAGACAGCAGCCAATGCATATGCAAACGCCTGTGGGAAGAGTTCCTGCAAGTGCTTCTTCGACGTACTATATATAA___ATATCTGTGTAGCATTCCTCTGCCTCTCAGAAGCTGTTATTGGTATTGCTGTTTAAACGCCACTACATTTTATGGAGCGTTGGACCGAATCAGTCTTTAAATGAATCATGCATTGAGCATACTTATCGATTCTCCCCGTGCTGTGTTCAGACGGCCATGCCTTTTATGTTCTGGTATCTTTTTGTAAAATACTTTTTTTAATACTTAATTTCTTTGTGGTATTCCACAGTTGCATTGTTGTTACTGTAAACAGATTGTAATAGTTTCCAGCCGGAGATGAAATTATATGAAAGGCAGCCAGATTTGATGAATTAAATGGGCATCTTGGTGATTTAATTGTATTCAATTTCATTATATTCAACGAAGATGAGAATTTGGAAAATTTTCACCAAATCAGATGGCAAGAAACATTGAAGAGTGACCGACTTGGTAAGAAACATCGAAGAGTGACCACAGTCTCTCACCACTGCACTTTTCAGTGCACTATATCCCTAAAAGGATGTAAATGATGGGATCGACGAGGCTTGAACCCACGATTACATCGTGACAAGGTGGTGTTCTAACTAATTGAACTACACTCTCGATACAGTGTAATTTAATTTAGTGTGACACTTAATTCTCTCGAGCCTTGTTTAATAATAATAACAAGAATATAATCCGATGTT

Fln Alignment:

Contig8113___MGSIAGQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKIVNTKVNVGSNRNQAFVEFADLNQAIAMVSYYASSPEQAQVRGKTVYLQYSNRHEIVNSKNSGDEASNVLLVTIEGVEAGDVSIDVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDLDTASSARSALDGRSIPRYLLAEHVGPCHLRISFSAHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGTGQFGIGPDGQRREPESNVLLASIENMLYAVTVDVLHTVFSAFGTVQKIAMFEKNAGWQALIQYADIPTAVVAKEALEGHSIYDGGYCKLHLSYSRHTDLNVKVNNDRSRDYTLPKVGVLQNQLPLIGQQLSSLPAGVGGQPPSAPYMYPGNHFVSGVHPPQPASMAGPVSQTTGSLIQGTAPNQIYMTSPAQLATSLG-MSSGFPGQAQLSVPPYSSATYFSGPTPMQNPGHYTSPMGSGMPPLASQNPHGGTAFPMPAYRQQPMHMQTPVGRVP
D5AA11______________MGSVAGQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKIVNTKVNVGSNRNQAFVEFAELNQAIAMVSYHASSPEQAQVRGKTVYLQYSNRHEIVNSKNSGDEASNVLLVTIEGVEAGDVSIDVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDVDTASSARSALDGRSIPRYLLAEHVGPCHLRISFSAHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGTGQFGIGPDGQRREPASNVLLASIENMQYAVTVDVLHTVFSAFGIVQKIAMFEKNAGWQALIQYADIPTAVIAKEALEGHFIYAGGYCKLHLSYSRHTDLNVKVNNDRSRDYTLPKVGILQNQLSILGQQPSSLPAGLGGQPTSAPYMYPGNHFVTGVHPPQPTSIAGSVSQTTGSLIQGYAPNQMYMTSPAQLATPLGTTSAGFPGQAHLSIPPYSSATYLSGPPPMQNPGHYTSPMGSGMPPFASQSPHGGPAFSMPPYSHQPMHMQMPVGRVP

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
176		50	50		1.0
205		60	40		1.0
309	16			83	0.994512
317		83		16	0.994512
447			50	50	1.0
681		12		87	0.992554
713		14		85	0.993533
768	16		83		0.994512
1487		90		10	0.90298
1488		90		10	0.90298
1647			87	12	0.992554
1751	80			20	0.995493
1752			80	20	0.995493
1860		10		90	0.90298
2020		80		20	0.999996
2130	10	90			0.90298
2132		90		10	0.90298
2138	12			87	0.992554
2140	14			85	0.993533
2242	20		80		0.995493
2332	20		80		0.995493
2333		20		80	0.995493
2380	66		33		0.997452
2446			75	25	0.996473
2447		25	75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
2700	2711	TAA TAA TAA TAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain