SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8100

Length: 2516 nt

UniGene Fasta

>sp_v3.0_unigene8100
AACCACTCGCCATTAATAATAACACCAACCAGGTGAGATTGACCATGTTCCATTTCAGAGTGGAGGAAATCATGAATAATGATGAAAGCCTGTGTTGTGTACGTGCCTAATAAATACAATACCCTCTATTCTCTGATACTGACATGACTCATCGCACTGTCACTGTAACTCCACAGTTTGTATAATAGACACCCCTCGGCGGAGAGGCCAGCAACAATAAATTTCTCTCTTTTCTTTCCTATTTCGATCGAAATTCTTCCTGTGAAGCCTCGTTTACATGGCTTCTCTGATAGGAATAGTACCGTTGCTGCTCCTTCTGACGCTAATTCCTGCGACCGAGAGCTTCAATGATACAGAGGCATTACTCCAATTCAGAGCCCTAACGGATTCCCACGGCATTCTTGCCAAAAACTGGAGCTCGGCCGATGCCTGCACTGGGAAATGGCAGGGCATAACCTGCAATAAAGGCAGAGTCTTCTTCATTTCGCTTTCGGGCCATGAGTTACGAGGCCCTATCGATCCTCTTTCTGCGCTCGACCAGCTCCGGGTTCTTGATCTTCAGGGAAATCGGCTCAACGGCAGCTTGGATCCATTGTCAAATTGCTACAACCTCAAATTGCTCTACTTGGCTTCCAATGACTTCTCGGGTCTGATTCCTGCTGATCTTGCTCGGCTCAGGCGTCTGGTGAGGCTCGACGCTTCCGATAACAATCTCCGCGGATCGATTCCGCCGGTGATACGGAACCTTACGCGGCTGGTAACTCTGCGCCTGCAGAACAACATTCTGTCAGGGCCGTTGCCGGATCTCAGCTTCTTGCGGGACTTAAATGTTTCCAATAATGAACTTTCTGGCCAAGTACCCCGCCAGCTTCTGGAGAAGTTCCCGGCTTCGGCCTTCGCAGGCAATGCTGGGCTCTGCGGACGGAGTCCTTTTCCGGCCTGTACCATTCCGCCACCGGTGGCTGTAGTGGTGCCGTCGAATCCGAGCTCCGACCCGGGATCGAGTACTCCCGTGGACACGAGATCCAAAACTAGGGCTCTCAGCACGGGGGCCGTCATTGCCATTGTGGTCGGTGATGCTGCCGTTCTGATTTTGATAACGCTCATTTTTCTGGTGTATTACTGGAAGAAATACGTCAGGGAGGCCGAGGTTGCTGGAAAAACGGCCTCCGAGAAGATGGATTTCTCCGGTGGCGCGCAGACGCCAGAGATGGAGAGGAGTAAACTTGTGTTCTTTGATAGGAAGAAGCAGTTTGAGTTGGAGGATCTGCTGAGGGCGTCTGCCGAGATGTTGGGGAAGGGGAGCTTTGGGACTGCTTATAAAGCCGTTCTTGATGATGGCTGTGTTGTTGCTGTCAAGAGATTAAAGGACGTTAATCCTTCTGGGAAGAAGGAATTCGATCAGCACATGGAGTTGATTGGGAAATTGAGGCATCCCCACATAGTTCGTCTCAGAGCTTATTATTATGCAAAAGAGGAGAAGCTTCTGGTTTATGATTATCTTCCCAATGGGAGCTTGTATTCTCTTCTACACGGGAACAGAGGTCCAGGAAGAACACCATTGGACTGGACTACAAGAATCAGTCTAGTCTTAGGAGCTGCTCGAGGTCTTGCTTACATCCATGAAGAATATGGGTCTTTGAAGATTCCACATGGGAATATCAAATCCTCCAATATTCTCTTGGACAAGAATGGTGTTGCATGCATTTCTGATTTTGGGTTGGCCCTGCTCCTGAACCCCTCGCATATTCATGCTTCATCTAGATATGTAGGGTACAGAGCACCTGAGCAGGCAGAAACCAAAAAATTGTCCCAAAAGGCCGATGTGTACAGCTTTGGTGTGTTACTCCTTGAGGTCTTGACTGGAAAAGCTCCTATGCACTATCATTCGCAAGAAGAAGGTGTTGATCTTCCAAAATGGGTTCAGTCCATTGTCCGGGAAGAATGGACTGCTGAAGTGTTCGACCTTGAATTGATGAGGTACAAGAACATTGAGGAGGAGATGGTTTCGATGTTGCAGATTGCTTTGAGTTGTGTTTCACAGTCACCCGAACAACGTCCTAAGATGGGTGAAGTTGTTAGGTTGATTGAGGACATCAGAGTTGAGCAATCTCCTTTGGGTGAATGGGATGAGTCTTACTCTGTTTCTCCTTCTGCCTCTGAAGATGTTGTAACAAGCCACTGAAACGGATGGTTTAGCTAGATTTGGAGTGTGTCATGTTATGTTTGTTTCCCATTGTCTTGTTAGGTATCAAGAGCTATTGATAGATTTAATGTATTATATCTTGGCTTGGGTAGAGTCTGTACGTGATTGCTCGAAAGATAATTCTATGTATTGGTTATGTAGTTCCACAGCATACATTCTTTATGGTTTAAGTAATTTCAGCATTGCGGTTTATTAATGGAGTGGTGGTTCGTTGGATAATTTTTCTGCCAAGAGTTGCTCGGCATCTTTTGCTATATTGTCATAAATTACTGGTTCTAATTACTAGCTCAAGATGTATTTTGGAAGTGCA

Ace file of the UniGene sp_v3.0_unigene8100

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gb\|AAD24639.1\| putative receptor-like protein kinase [Arabidopsis thaliana] gb\|ACN59305.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AEC09269.1\| leucin	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	7.156e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	[Tau protein] kinase.	EC:2.7.11.26	-	1.561e-13	-

Source	Gene names
Sma3	8F2.11; AP2_E06.2; AT1G48480; AT1G68400; AT2G26730; AT3G08680; AT3G17840; AT3G51740; AT4G23740; AT5G05160; AT5G16590; AT5G53320; AT5G58300; At1g48480; At1g68400; At2g26730; At2g36570; At3g08680; At3g17840; At3g51740; At3g51740/T18N14.120; At4g23740; At5g0

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to symbiotic fungus	GO:0009610	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G36570.1	Leucine-rich repeat protein kinase family protein chr2:15335583-15337725 FORWARD LENGTH=672	56%
RefSeq	Arabidopsis thaliana	NP_181196.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002326408.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN40

Fln msg: your sequence is longer than subject: 636 - 340

Fln protein: MASLIGIVPLLLLLTLIPATESFNDTEALLQFRALTDSHGILAKNWSSADACTGKWQGITCNKGRVFFISLSGHELRGPIDPLSALDQLRVLDLQGNRLNGSLDPLSNCYNLKLLYLASNDFSGLIPADLARLRRLVRLDASDNNLRGSIPPVIRNLTRLVTLRLQNNILSGPLPDLSFLRDLNVSNNELSGQVPRQLLEKFPASAFAGNAGLCGRSPFPACTIPPPVAVVVPSNPSSDPGSSTPVDTRSKTRALSTGAVIAIVVGDAAVLILITLIFLVYYWKKYVREAEVAGKTASEKMDFSGGAQTPEMERSKLVFFDRKKQFELEDLLRASAEMLGKGSFGTAYKAVLDDGCVVAVKRLKDVNPSGKKEFDQHMELIGKLRHPHIVRLRAYYYAKEEKLLVYDYLPNGSLYSLLHGNRGPGRTPLDWTTRISLVLGAARGLAYIHEEYGSLKIPHGNIKSSNILLDKNGVACISDFGLALLLNPSHIHASSRYVGYRAPEQAETKKLSQKADVYSFGVLLLEVLTGKAPMHYHSQEEGVDLPKWVQSIVREEWTAEVFDLELMRYKNIEEEMVSMLQIALSCVSQSPEQRPKMGEVVRLIEDIRVEQSPLGEWDESYSVSPSASEDVVTSH*

Protein Length: 637

Fln nts: AACCACTCGCCATTAATAATAACACCAACCAGGTGAGATTGACCATGTTCCATTTCAGAGTGGAGGAAATCATGAATAATGATGAAAGCCTGTGTTGTGTACGTGCCTAATAAATACAATACCCTCTATTCTCTGATACTGACATGACTCATCGCACTGTCACTGTAACTCCACAGTTTGTATAATAGACACCCCTCGGCGGAGAGGCCAGCAACAATAAATTTCTCTCTTTTCTTTCCTATTTCGATCGAAATTCTTCCTGTGAAGCCTCGTTTAC_-_ATGGCTTCTCTGATAGGAATAGTACCGTTGCTGCTCCTTCTGACGCTAATTCCTGCGACCGAGAGCTTCAATGATACAGAGGCATTACTCCAATTCAGAGCCCTAACGGATTCCCACGGCATTCTTGCCAAAAACTGGAGCTCGGCCGATGCCTGCACTGGGAAATGGCAGGGCATAACCTGCAATAAAGGCAGAGTCTTCTTCATTTCGCTTTCGGGCCATGAGTTACGAGGCCCTATCGATCCTCTTTCTGCGCTCGACCAGCTCCGGGTTCTTGATCTTCAGGGAAATCGGCTCAACGGCAGCTTGGATCCATTGTCAAATTGCTACAACCTCAAATTGCTCTACTTGGCTTCCAATGACTTCTCGGGTCTGATTCCTGCTGATCTTGCTCGGCTCAGGCGTCTGGTGAGGCTCGACGCTTCCGATAACAATCTCCGCGGATCGATTCCGCCGGTGATACGGAACCTTACGCGGCTGGTAACTCTGCGCCTGCAGAACAACATTCTGTCAGGGCCGTTGCCGGATCTCAGCTTCTTGCGGGACTTAAATGTTTCCAATAATGAACTTTCTGGCCAAGTACCCCGCCAGCTTCTGGAGAAGTTCCCGGCTTCGGCCTTCGCAGGCAATGCTGGGCTCTGCGGACGGAGTCCTTTTCCGGCCTGTACCATTCCGCCACCGGTGGCTGTAGTGGTGCCGTCGAATCCGAGCTCCGACCCGGGATCGAGTACTCCCGTGGACACGAGATCCAAAACTAGGGCTCTCAGCACGGGGGCCGTCATTGCCATTGTGGTCGGTGATGCTGCCGTTCTGATTTTGATAACGCTCATTTTTCTGGTGTATTACTGGAAGAAATACGTCAGGGAGGCCGAGGTTGCTGGAAAAACGGCCTCCGAGAAGATGGATTTCTCCGGTGGCGCGCAGACGCCAGAGATGGAGAGGAGTAAACTTGTGTTCTTTGATAGGAAGAAGCAGTTTGAGTTGGAGGATCTGCTGAGGGCGTCTGCCGAGATGTTGGGGAAGGGGAGCTTTGGGACTGCTTATAAAGCCGTTCTTGATGATGGCTGTGTTGTTGCTGTCAAGAGATTAAAGGACGTTAATCCTTCTGGGAAGAAGGAATTCGATCAGCACATGGAGTTGATTGGGAAATTGAGGCATCCCCACATAGTTCGTCTCAGAGCTTATTATTATGCAAAAGAGGAGAAGCTTCTGGTTTATGATTATCTTCCCAATGGGAGCTTGTATTCTCTTCTACACGGGAACAGAGGTCCAGGAAGAACACCATTGGACTGGACTACAAGAATCAGTCTAGTCTTAGGAGCTGCTCGAGGTCTTGCTTACATCCATGAAGAATATGGGTCTTTGAAGATTCCACATGGGAATATCAAATCCTCCAATATTCTCTTGGACAAGAATGGTGTTGCATGCATTTCTGATTTTGGGTTGGCCCTGCTCCTGAACCCCTCGCATATTCATGCTTCATCTAGATATGTAGGGTACAGAGCACCTGAGCAGGCAGAAACCAAAAAATTGTCCCAAAAGGCCGATGTGTACAGCTTTGGTGTGTTACTCCTTGAGGTCTTGACTGGAAAAGCTCCTATGCACTATCATTCGCAAGAAGAAGGTGTTGATCTTCCAAAATGGGTTCAGTCCATTGTCCGGGAAGAATGGACTGCTGAAGTGTTCGACCTTGAATTGATGAGGTACAAGAACATTGAGGAGGAGATGGTTTCGATGTTGCAGATTGCTTTGAGTTGTGTTTCACAGTCACCCGAACAACGTCCTAAGATGGGTGAAGTTGTTAGGTTGATTGAGGACATCAGAGTTGAGCAATCTCCTTTGGGTGAATGGGATGAGTCTTACTCTGTTTCTCCTTCTGCCTCTGAAGATGTTGTAACAAGCCACTGA___AACGGATGGTTTAGCTAGATTTGGAGTGTGTCATGTTATGTTTGTTTCCCATTGTCTTGTTAGGTATCAAGAGCTATTGATAGATTTAATGTATTATATCTTGGCTTGGGTAGAGTCTGTACGTGATTGCTCGAAAGATAATTCTATGTATTGGTTATGTAGTTCCACAGCATACATTCTTTATGGTTTAAGTAATTTCAGCATTGCGGTTTATTAATGGAGTGGTGGTTCGTTGGATAATTTTTCTGCCAAGAGTTGCTCGGCATCTTTTGCTATATTGTCATAAATTACTGGTTCTAATTACTAGCTCAAGATGTATTTTGGAAGTGCA

Fln Alignment:

Contig8100___GGAQTPEMERSKLVFFDRKKQ-FELEDLLRASAEMLGKGSFGTAYKAVLDDGCVVAVKRLKDVNPSGKKEFDQHMELIGKLRHPHIVRLRAYYYAKEEKLLVYDYLPNGSLYSLLHGNRGPGRTPLDWTTRISLVLGAARGLAYIHEEYGSLKIPHGNIKSSNILLDKNGVACISDFGLALLLNPSHIHASSRYVGYRAPEQAETKKLSQKADVYSFGVLLLEVLTGKAPMHYHSQEEGVDLPKWVQSIVREEWTAEVFDLELMRYKNIEEEMVSMLQIALSCVSQSPEQRPKMGEVVRLIEDIR
B8LN40______________GSAQ--EAERNKLVFFEGSQYTFDLEDLLRASAEVLGKGSVGTAYKAVLEDGTTVVVKRLKDV-AANRKDFEQQMELVGRIRHRNLVPLRAFYYSKDEKLLVYDYMPTGSLSALLHGSRGSGRTPLDWDTRMRIALGAARGISHIHEEGGG-KFTHGNIKSSNVLLTTDLDGCVSDFGLVPLFSAAA--AANRIAGYRAPEVIETRKVTQKSDVYSFGVLLLELLTGKAPNQASLNDEGIDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQLLQIAMACVAAVPDQRPRMQDVVKMIEDMR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1238	12			87	0.992554
1300	25		75		0.996473
1302	75		25		0.996473
1304		25	75		0.996473
1313	20		80		0.995493
1314			80	20	0.995493
1766	87		12		0.992554
2224			10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain