SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8079

Length: 1154 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8079

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methionine aminopeptidase n=1 Tax=Picea sitchensis RepID=B8LQC2_PICSI	-	-	0.0	89%
FL-Next	sp=Methionine aminopeptidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	ECs	Term	Type	e value	Identity
Sma3	Methionyl aminopeptidase.	EC:3.4.11.18	-	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M24, methionine aminopeptidase	IPR001714	-	-
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Peptidase M24A, methionine aminopeptidase, subfamily 1	IPR002467	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G37040.1	MAP1D methionine aminopeptidase 1D chr4:17455175-17457085 FORWARD LENGTH=350	67%
RefSeq	Arabidopsis thaliana	NP_568014.1	methionine aminopeptidase 1D [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002306464.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQC2

Fln msg:

Fln protein: MACTSPRLFSSFFGDSVASRLPSLSTFQSNFCSRPGNISKKHVLIVSRKLSGLTDLLFNRRGWDQEQSKWQHKHARLYPGKVSPRLAVPEHILKPPYVNSRYVPEVASGSQIHDAEGIACMRDSGQLAARVLEYAGTLVKPGVTTDEIDKAVHKMIIDAGAYPSPLGYGQFPKSVCTSVNECICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDTSKTFFCGNMSEEANQLVKVTEECFHKAITICGPRVEFKKIGETINDHADKFHYGVVQQFVGHGVGKVFHSDPMILHFRNNKPGRMVIGQTFTIEPMLTIGSIDHIMWNDNWTVVTADGSLSAQFEHTLLITENGVEILTQC*

Protein Length: 357

Fln nts: ATGGGACACACATTTGTATCTCTGTGGATTGTCTCTGGCAAGGGAGGCCCAAAGAATCGAATCCCTCTGGCCTCTTGCATATTCA_-_ATGGCTTGCACATCGCCTCGGCTCTTCTCGTCCTTCTTCGGGGATTCTGTAGCCTCCCGTCTTCCGTCCTTGTCCACATTTCAATCAAATTTCTGCTCCCGCCCAGGAAACATATCCAAGAAACATGTTTTGATAGTTTCAAGGAAATTATCTGGTTTAACTGATCTTCTATTTAACAGGAGAGGTTGGGACCAAGAGCAATCAAAGTGGCAACACAAGCATGCGAGATTATATCCTGGAAAAGTATCACCTCGATTGGCTGTTCCAGAACACATATTAAAGCCACCTTATGTGAATTCAAGATATGTTCCTGAGGTTGCAAGTGGATCACAAATACATGATGCTGAGGGTATAGCATGTATGCGAGATTCGGGTCAACTAGCTGCAAGGGTTTTGGAGTATGCTGGGACATTAGTTAAGCCAGGAGTAACTACAGATGAAATTGACAAAGCAGTTCACAAGATGATCATTGATGCCGGAGCATATCCCTCACCACTTGGTTATGGTCAATTTCCAAAGAGCGTCTGCACATCAGTGAATGAATGCATTTGTCATGGCATACCAGACTCACGTCCGTTGGAGGATGGTGACATTGTTAATATTGATGTAACAGTTTACTTGAATGGATATCATGGGGATACATCAAAGACTTTCTTTTGTGGAAATATGTCAGAGGAAGCTAATCAACTTGTAAAGGTCACTGAAGAATGTTTTCATAAAGCAATAACAATTTGTGGACCAAGAGTGGAGTTTAAGAAAATTGGGGAAACAATAAATGACCATGCAGATAAATTCCACTATGGTGTTGTACAACAATTTGTTGGTCATGGTGTTGGGAAGGTTTTCCATTCTGACCCAATGATACTTCATTTCCGTAACAATAAACCTGGCCGCATGGTGATTGGTCAAACTTTCACAATTGAGCCTATGTTAACAATCGGTAGCATTGATCATATTATGTGGAATGACAACTGGACAGTTGTTACAGCTGACGGTAGCTTGTCTGCACAGTTTGAGCATACTTTGTTGATCACCGAGAATGGTGTGGAAATTTTAACACAATGTTAA___A

Fln Alignment:

Contig8079___MACTSPRLFSSFFGDSVASRLPSLSTFQSNFCSRPGNISK-KHVLIVSRKLSGLTDLLFNRRGWDQEQSKWQHKHARLYPGKVSPRLAVPEHILKPPYVNSRYVPEVASGSQIHDAEGIACMRDSGQLAARVLEYAGTLVKPGVTTDEIDKAVHKMIIDAGAYPSPLGYGQFPKSVCTSVNECICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDTSKTFFCGNMSEEANQLVKVTEECFHKAITICGPRVEFKKIGETINDHADKFHYXXXXXXXXXXXXXXXXSDPMILHFRNNKPGRMVIGQTFTIEPMLTIGSIDHIMWNDNWTVVTADGSLSAQFEHTLLITENGVEILTQC
B8LQC2______________MACTSPRLFSSLFGDPVASRLQSLSTFQLNFSSRQGNISKSKHVLIVSRKLSGLTDLLFNRRGRDQEQSKWQHKHARLNPGKVSPRLPIPEHILKPPYVNSRHVPEVASGSQIHDAEGIACMRASGQLAARVLEYAGTLVKPGITTDEIDKAVHKMIIDAGAYPSPLGYGQFPKSVCTSVNECICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDTSKTFFCGNTPEEANQLVKVTEESLHKAITICGPRVEFKKIGETINDYADKFHYGVVQQFVGHGVGKVFHSDPMILHFRNNKPGRMVIGQTFTIEPMLTIGSIDPVMWNDNWTVVTADGSLSAQFEHTLLITENGVEILTQC

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
281	16		83		0.994512
753		22		77	0.999999
799			42	57	1.0
865	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain