SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8070

Length: 1976 nt

UniGene Fasta

>sp_v3.0_unigene8070
TTGTTTGTAACAAAGTTTTATCACTTCCTCAATATAGGAAACAAAGTTTTATCGCTTCCTCAATATAGGAACCCATGATCACACGTCAGATGTATATCCCCATCTTCACACGTCACTGTGAAAAGTTCATATATAAATCGGCGCTCAGTAATTTATCGGCGCCGGATGTCTGCATTTTATATACAGATTATCTCTTCTGATTGGGGTGATAGTTGTACTCTATATATTAATTACTCTTCTCTTTGGTCGTATTCTGGAATTTTCCTCTCTGGGACTTGTCAAAAATTCAGCTTATTAGAGCAAAGCAATGGCCGATGATCGAAGATCTCATTTGGGTTTACCGGCGATGGATATTTCGCAGGCTTTTCCTCAGGCTACTCCGGCTTCCAAGTTCCCTCCCTGTGTATCCGATTATTTTCAGTTAGATGCTTTTCTAACCCCTGAAGAGCGGTCTATTCGTAAGAAAGTCAGGGAATTTGCAGAAACAGAAATTGCTCCGATAATTGTTAAGTACTGGGAACGAGCGGAATTTCCATTTGAGCTTGTGCCAAAGCTTGCGAATCTTAAAGTATCTGGAGCCACCATTAAGGGATATGGCTGCCCTGGTCTATCTATTCTTGGGAGTGCTCTTGCATTGGCTGAGGTTGCAAGGGTAGATGCTAGCTGTTCTACATTTTTGTTGGTTCACACTTGCTTGGCGATGCTTACAATTTCAATGTGTGGAAGCGAGGATCAAAAGACAAAATACCTACCTTCTTTAGCTCGACTTGATACTATATCATGTTGGGCTTTGACTGAACCCAACTTTGGCAGCGATGCAAGCTCTTTGAACACAACAGCAACCAAGGTTGTAGGTGGTTGGAAGTTGAATGGCCAAAAACGTTGGATAGGAAACAGTACCTTTGCAGACATACTAGTTGTTTTTGCCAGGAATACAACCACAAATCAAATCAATGGGTTTATTGTGAAAAAAGGTACTCCTGGACTGAGGGTAACCAAAATAGAAAATAAAATTGGGCTGAGGTGTGTTCAAAATGGGGACATTCTTTTGAAAGAAGTTTTTGTTGCTGACGGGGATAGATTGCCAGGCATTGATTCCTTTGAAGACACAAGAAAGGTGCTTGCTGTATCACGTGTAATAGTTTCTTGGCAGCCCATCGGTATCGCGATGGGTGTCTACGATATTTGTCACAGGTATTTACAGGAAAGAAAGCAGTTTGGAGTGTCATTAAGTTCTTTCCAAATCAGCCAAGAAAAACTTACTCGTATGTTGGGTAACATTCAAGCGATGAACTTAATGGGATGGCGACTGTGCAAGTTGTATGATGATGGGAAGATGACTCCAGGACACGCCAGCTTAACCAAGGCCTGGAATACCTTGAAAGCAAGGGAGGTAGTGTCTTTGGGACGAGAATTGCTTGGTGGCAATGGAATCTTGACGGACTTTCTGGTGGCTAAGGCATTTTGTGATTTGGAACCTATATACTCATATGAAGGAACGTATGAAGTCAATTCACTGGTCACTGGGCGAGAAGTTACTGGAATTGCAAGTTTTAAAGCACCCCCGGCTCGTAAACAATTAACTGCAAAGTTGTAGGTACAATTCAGCTACGATGGAAAACTTCATTGTCAGTATTGCTGGTTATCTAGAGGCGTTACTGACAAGGCATAAATTTAGGGTGAGTTGAAAAGGGCAATGCAGCCCTAAAACTCTAGCAGCAAATAATTATGGACCAGCCTTTGTACGATGTTTTATGATAGAACGATCCCCTAAAACTCTAGCAGCAAATAATTATGGACCAGCCTTTGTACGATGTTTTATGATAGAACGATTCCTAAATGAGTGACTTCCAAAATGGATAAACATGGAATTGAGATAGGCATCCAAAGCAAGAATCCAAATGCAGGCCCATTTGAGTTATATGTGTGTTATTGATTAATTTTCATCTCCTCTTATGTAGTCATTTTACAAGTAA

Ace file of the UniGene sp_v3.0_unigene8070

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 pdb\|2IX6\|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 pdb\|2IX6\|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, A	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-
Sma3		IPR013764	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51840.1	ACX4, ATSCX, ATG6 acyl-CoA oxidase 4 chr3:19225653-19229008 REVERSE LENGTH=436	72%
RefSeq	Arabidopsis thaliana	NP_190752.1	acyl-coenzyme A oxidase 4 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002322987.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUS2

Fln msg:

Fln protein: MADDRRSHLGLPAMDISQAFPQATPASKFPPCVSDYFQLDAFLTPEERSIRKKVREFAETEIAPIIVKYWERAEFPFELVPKLANLKVSGATIKGYGCPGLSILGSALALAEVARVDASCSTFLLVHTCLAMLTISMCGSEDQKTKYLPSLARLDTISCWALTEPNFGSDASSLNTTATKVVGGWKLNGQKRWIGNSTFADILVVFARNTTTNQINGFIVKKGTPGLRVTKIENKIGLRCVQNGDILLKEVFVADGDRLPGIDSFEDTRKVLAVSRVIVSWQPIGIAMGVYDICHRYLQERKQFGVSLSSFQISQEKLTRMLGNIQAMNLMGWRLCKLYDDGKMTPGHASLTKAWNTLKAREVVSLGRELLGGNGILTDFLVAKAFCDLEPIYSYEGTYEVNSLVTGREVTGIASFKAPPARKQLTAKL*

Protein Length: 431

Fln nts: TTGTTTGTAACAAAGTTTTATCACTTCCTCAATATAGGAAACAAAGTTTTATCGCTTCCTCAATATAGGAACCCATGATCACACGTCAGATGTATATCCCCATCTTCACACGTCACTGTGAAAAGTTCATATATAAATCGGCGCTCAGTAATTTATCGGCGCCGGATGTCTGCATTTTATATACAGATTATCTCTTCTGATTGGGGTGATAGTTGTACTCTATATATTAATTACTCTTCTCTTTGGTCGTATTCTGGAATTTTCCTCTCTGGGACTTGTCAAAAATTCAGCTTATTAGAGCAAAGCA_-_ATGGCCGATGATCGAAGATCTCATTTGGGTTTACCGGCGATGGATATTTCGCAGGCTTTTCCTCAGGCTACTCCGGCTTCCAAGTTCCCTCCCTGTGTATCCGATTATTTTCAGTTAGATGCTTTTCTAACCCCTGAAGAGCGGTCTATTCGTAAGAAAGTCAGGGAATTTGCAGAAACAGAAATTGCTCCGATAATTGTTAAGTACTGGGAACGAGCGGAATTTCCATTTGAGCTTGTGCCAAAGCTTGCGAATCTTAAAGTATCTGGAGCCACCATTAAGGGATATGGCTGCCCTGGTCTATCTATTCTTGGGAGTGCTCTTGCATTGGCTGAGGTTGCAAGGGTAGATGCTAGCTGTTCTACATTTTTGTTGGTTCACACTTGCTTGGCGATGCTTACAATTTCAATGTGTGGAAGCGAGGATCAAAAGACAAAATACCTACCTTCTTTAGCTCGACTTGATACTATATCATGTTGGGCTTTGACTGAACCCAACTTTGGCAGCGATGCAAGCTCTTTGAACACAACAGCAACCAAGGTTGTAGGTGGTTGGAAGTTGAATGGCCAAAAACGTTGGATAGGAAACAGTACCTTTGCAGACATACTAGTTGTTTTTGCCAGGAATACAACCACAAATCAAATCAATGGGTTTATTGTGAAAAAAGGTACTCCTGGACTGAGGGTAACCAAAATAGAAAATAAAATTGGGCTGAGGTGTGTTCAAAATGGGGACATTCTTTTGAAAGAAGTTTTTGTTGCTGACGGGGATAGATTGCCAGGCATTGATTCCTTTGAAGACACAAGAAAGGTGCTTGCTGTATCACGTGTAATAGTTTCTTGGCAGCCCATCGGTATCGCGATGGGTGTCTACGATATTTGTCACAGGTATTTACAGGAAAGAAAGCAGTTTGGAGTGTCATTAAGTTCTTTCCAAATCAGCCAAGAAAAACTTACTCGTATGTTGGGTAACATTCAAGCGATGAACTTAATGGGATGGCGACTGTGCAAGTTGTATGATGATGGGAAGATGACTCCAGGACACGCCAGCTTAACCAAGGCCTGGAATACCTTGAAAGCAAGGGAGGTAGTGTCTTTGGGACGAGAATTGCTTGGTGGCAATGGAATCTTGACGGACTTTCTGGTGGCTAAGGCATTTTGTGATTTGGAACCTATATACTCATATGAAGGAACGTATGAAGTCAATTCACTGGTCACTGGGCGAGAAGTTACTGGAATTGCAAGTTTTAAAGCACCCCCGGCTCGTAAACAATTAACTGCAAAGTTGTAG___GTACAATTCAGCTACGATGGAAAACTTCATTGTCAGTATTGCTGGTTATCTAGAGGCGTTACTGACAAGGCATAAATTTAGGGTGAGTTGAAAAGGGCAATGCAGCCCTAAAACTCTAGCAGCAAATAATTATGGACCAGCCTTTGTACGATGTTTTATGATAGAACGATCCCCTAAAACTCTAGCAGCAAATAATTATGGACCAGCCTTTGTACGATGTTTTATGATAGAACGATTCCTAAATGAGTGACTTCCAAAATGGATAAACATGGAATTGAGATAGGCATCCAAAGCAAGAATCCAAATGCAGGCCCATTTGAGTTATATGTGTGTTATTGATTAATTTTCATCTCCTCTTATGTAGTCATTTTACAAGTAA

Fln Alignment:

Contig8070___MADDRRSHLGLPAMDISQAFPQATPASKFPPCVSDYFQLDAFLTPEERSIRKKVREFAETEIAPIIVKYWERAEFPFELVPKLANLKVSGATIKGYGCPXXXXXXXXXXXXEVARVDASCSTFLLVHTCLAMLTISMCGSEDQKTKYLPSLARLDTISCWALTEPNFGSDASSLNTTATKVVGGWKLNGQKRWIGNSTFADILVVFARNTTTNQINGFIVKKGTPGLRVTKIENKIGLRCVQNGDILLKEVFVADGDRLPGIDSFEDTRKVLAVSRVIVSWQPIGIAMGVYDICHRYLQERKQFGVSLSSFQISQEKLTRMLGNIQAMNLMGWRLCKLYDDGKMTPGHASLTKAWNTLKAREVVSLGRELLGGNGILTDFLVAKAFCDLEPIYSYEGTYEVNSLVTGREVTGIASFKAPPARKQLTAKL
A9NUS2______________MANDRTSHLGLPAMDISLAFPQATPASKFPPCVSDYFQLDAFLTPEERDIRKKVREVAETEIAPIIVKYWERAEFPFEIVPKLATLKVSGGTIKGYGCPGLSTLGSALALSEVARVDASCSTFLMVHTCLAMLTISMCGSEDQKTKYLPSLAQLHTISCWALTEPNYGSDASSLNTIATKVEGGWKLDGQKRWIGNSTFADILVVFARNITTNQINGFIVRKGTPGLRVTKIENKIGLRCVQNGDILLKGVFVADEDRLPGIDSFQDTSKVLAVSRIMVSWQPIGIAMGVYDMCHRYLQERKQFGVSLNSFQISQEKLIRMLGNIQAMNLMGWRLCKLYDDGKMTPGHASLTKAWNTLKAREVVSLGRELLGGNGILTDFLVAKAFCDLEPIYSYEGTYEVNSLVTGREVTGTASFKAPPARKLLTAKL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
364		66		33	0.997452
545		16		83	0.994512
1048		16		83	0.994512
1441		90		10	0.90298
1733	12		88		1.0
1798			75	25	1.0
1801	12	87			0.992554
1808		33		66	1.0
1897	75		25		1.0
1919		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain