SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8059

Length: 2129 nt

UniGene Fasta

>sp_v3.0_unigene8059
ATGGGGAACAAAATCCATATCACTTACCCTCTCCTTTGGACCATAGTGAAAATAATAAGCCCGAAAAACCGCTTACAGCACGAAATTCAAATTCAATTTCACGGGACTTCAAACAAGCCGTCTTTCACTGCATACTCCCTTTCCCGCAAAACACAAACCAAACACGTTAAACTCTAACCCAAAGCTTCTCGCAATTCTTACCAAATACAGTTACTCTGAGCCAAAACCCTTGGCGGGAAAACCCCAGTTAGGAGCTTCCGGCCATGGCGAAGGACGAAGAAGAATTCCGCGGCGAGATGGAGGAGCGCCTGGTGAACGAAGAGTACAAAATCTGGAAGAAAAATACGCCGTTTCTTTACGATCTGGTGATAACGCACGCCCTCGAATGGCCTTCACTCACTGTACAGTGGCTCCCGGACCGCGAAGAGCCCCCTGGAAAAGATTACTCCGTTCAGAAAATGATACTGGGGACTCATACTTCCGACAACGAGCCCAACTATCTGATGCTGGCCCAAGTTCAACTCCCGCTAGAGGATGCAGAGAATGACGCCAGGCAGTATGACGACGAGCGCGGGGAGATTGGAGGGTTCGGCTGCGCTAATGGCAAGGTACAAGTAATACAGCAAATCAATCACGATGGAGAGGTCAATAGAGCCCGATACATGCCACAAAATCCTTTCATTATTGCCACGAAAACAGTTAGTGCAGAAGTCTATGTGTTTGACTACAGCAAGCATCCTTCAAAGCCTCCTCAAGATGGTGGCTGTAATCCTGATCTCAGATTGAGGGGTCATAATACAGAAGGTTATGGTTTATCATGGAGCCCTTTTAAGCATGGCCATCTTTTAAGTGGTTCAGACGATGCACAAATCTGTTTGTGGGACATTAATGTACCTGCCAAAAACAGAGTGCTTGAGGCCCAACAAATATTTAAGGTGCACGAGGGTGTTGTAGAAGATGTTGCATGGCATTTAAGGCATGAGTACCTTTTTGGGTCTGTCGGAGATGACCGCCATTTGTTGATATGGGATTTGCGTACATCTGCAACTAATAAACCACTGCATTCAGTAGTAGCTCATCAAGGTGAGGTTAACTGTCTTGCATTCAATCCTTTCAATGAGTGGGTACTGGCTACAGGATCCGCAGACAGAACGGTGAAACTTTTTGATCTGCGCAAGATATCCAGTGCTTTGCATACCTTTTCCTGTCACAAGGAGGAGGTTTTCCAAATAGGCTGGAGCCCCAAAAATGAAACAATATTGGCTTCTTGTAGTGCAGACAGAAGGCTTATGGTGTGGGACCTCAGCAGGATTGACGATGAGCAAACAGCAGAGGATGCAGAAGATGGACCACCTGAGTTGCTGTTTATTCATGGTGGACATACTAGTAAGATATCAGATTTCTCATGGAACCCGTGTGAGGATTGGGTTATAGCTAGTGTAGCTGAAGATAACATTCTCCAAATCTGGCAAATGGCTGAAAATATATACCATGACGAGGAGGATATGCTTCCTGAAGAAGCAGTGTAACTTTTATCTAGCTAGAAGTCGTGAAATTAAGAGGGATGTGAGGATTGGGTTATAGCTTGTGTAGCTGAAGATAACGTTCTCCAAATCTGGCAAATGGCTGAAAATGTATATCATGGTGAGGGGGATATGGCTTCCAAAGAAACATTGTAAGAGCTAGCTAGAATTTGTGAAATTAAGAGGTGTATTCGCTTTCAGAGTTTCTCAACAAATGACATGGTTCTCATTCCATTTTCTTTTATATAATGAGAAGCAAAACTTGGCTTATCATCTTTTTTATTGAGAAAAGACACGTTGAAAGAGATTAAACCTTTAGCTTTTGCTGTTTTCTGCTGTATTTATGTAGTTTGCAATCTGGTGAAGATTATGCCAGGTCTGCCTTTCCTTGTAATAGGTTTTATAGACAAATTTCTAGCTGAAAGTGATGCTCACGTTCTAGGTAAGATGGGAAACATCAGAATGTAAGGGTCTCAAATGTTGTCACTATTCAATTTTCATCTATTTCTGGTCTGGTGGATTTTGCTGGTAAGATATTTGAAGATGTCCAACACTTGTTCTAAGTGTGTTGTGAAATATAAGCACATAACTTGATATGAGTTGCAA

Ace file of the UniGene sp_v3.0_unigene8059

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G58230.1	MSI1, MEE70, ATMSI1 Transducin/WD40 repeat-like superfamily protein chr5:23556112-23557994 FORWARD LENGTH=424	85%
RefSeq	Arabidopsis thaliana	NP_200631.1	histone-binding protein RBBP4 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002320581.1	nucleosome/chromatin assembly factor group [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS29

Fln msg:

Fln protein: MAKDEEEFRGEMEERLVNEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDREEPPGKDYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAENDARQYDDERGEIGGFGCANGKVQVIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPQDGGCNPDLRLRGHNTEGYGLSWSPFKHGHLLSGSDDAQICLWDINVPAKNRVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSATNKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKISSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTAEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMLPEEAV*

Protein Length: 423

Fln nts: ATGGGGAACAAAATCCATATCACTTACCCTCTCCTTTGGACCATAGTGAAAATAATAAGCCCGAAAAACCGCTTACAGCACGAAATTCAAATTCAATTTCACGGGACTTCAAACAAGCCGTCTTTCACTGCATACTCCCTTTCCCGCAAAACACAAACCAAACACGTTAAACTCTAACCCAAAGCTTCTCGCAATTCTTACCAAATACAGTTACTCTGAGCCAAAACCCTTGGCGGGAAAACCCCAGTTAGGAGCTTCCGGCC_-_ATGGCGAAGGACGAAGAAGAATTCCGCGGCGAGATGGAGGAGCGCCTGGTGAACGAAGAGTACAAAATCTGGAAGAAAAATACGCCGTTTCTTTACGATCTGGTGATAACGCACGCCCTCGAATGGCCTTCACTCACTGTACAGTGGCTCCCGGACCGCGAAGAGCCCCCTGGAAAAGATTACTCCGTTCAGAAAATGATACTGGGGACTCATACTTCCGACAACGAGCCCAACTATCTGATGCTGGCCCAAGTTCAACTCCCGCTAGAGGATGCAGAGAATGACGCCAGGCAGTATGACGACGAGCGCGGGGAGATTGGAGGGTTCGGCTGCGCTAATGGCAAGGTACAAGTAATACAGCAAATCAATCACGATGGAGAGGTCAATAGAGCCCGATACATGCCACAAAATCCTTTCATTATTGCCACGAAAACAGTTAGTGCAGAAGTCTATGTGTTTGACTACAGCAAGCATCCTTCAAAGCCTCCTCAAGATGGTGGCTGTAATCCTGATCTCAGATTGAGGGGTCATAATACAGAAGGTTATGGTTTATCATGGAGCCCTTTTAAGCATGGCCATCTTTTAAGTGGTTCAGACGATGCACAAATCTGTTTGTGGGACATTAATGTACCTGCCAAAAACAGAGTGCTTGAGGCCCAACAAATATTTAAGGTGCACGAGGGTGTTGTAGAAGATGTTGCATGGCATTTAAGGCATGAGTACCTTTTTGGGTCTGTCGGAGATGACCGCCATTTGTTGATATGGGATTTGCGTACATCTGCAACTAATAAACCACTGCATTCAGTAGTAGCTCATCAAGGTGAGGTTAACTGTCTTGCATTCAATCCTTTCAATGAGTGGGTACTGGCTACAGGATCCGCAGACAGAACGGTGAAACTTTTTGATCTGCGCAAGATATCCAGTGCTTTGCATACCTTTTCCTGTCACAAGGAGGAGGTTTTCCAAATAGGCTGGAGCCCCAAAAATGAAACAATATTGGCTTCTTGTAGTGCAGACAGAAGGCTTATGGTGTGGGACCTCAGCAGGATTGACGATGAGCAAACAGCAGAGGATGCAGAAGATGGACCACCTGAGTTGCTGTTTATTCATGGTGGACATACTAGTAAGATATCAGATTTCTCATGGAACCCGTGTGAGGATTGGGTTATAGCTAGTGTAGCTGAAGATAACATTCTCCAAATCTGGCAAATGGCTGAAAATATATACCATGACGAGGAGGATATGCTTCCTGAAGAAGCAGTGTAA___CTTTTATCTAGCTAGAAGTCGTGAAATTAAGAGGGATGTGAGGATTGGGTTATAGCTTGTGTAGCTGAAGATAACGTTCTCCAAATCTGGCAAATGGCTGAAAATGTATATCATGGTGAGGGGGATATGGCTTCCAAAGAAACATTGTAAGAGCTAGCTAGAATTTGTGAAATTAAGAGGTGTATTCGCTTTCAGAGTTTCTCAACAAATGACATGGTTCTCATTCCATTTTCTTTTATATAATGAGAAGCAAAACTTGGCTTATCATCTTTTTTATTGAGAAAAGACACGTTGAAAGAGATTAAACCTTTAGCTTTTGCTGTTTTCTGCTGTATTTATGTAGTTTGCAATCTGGTGAAGATTATGCCAGGTCTGCCTTTCCTTGTAATAGGTTTTATAGACAAATTTCTAGCTGAAAGTGATGCTCACGTTCTAGGTAAGATGGGAAACATCAGAATGTAAGGGTCTCAAATGTTGTCACTATTCAATTTTCATCTATTTCTGGTCTGGTGGATTTTGCTGGTAAGATATTTGAAGATGTCCAACACTTGTTCTAAGTGTGTTGTGAAATATAAGCACATAACTTGATATGAGTTGCAA

Fln Alignment:

Contig8059___MAKDXXXXXXXXXXRLVNEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDREEPPGKDYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAENDARQYDDERGEIGGFGCANGKVQVIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPQDGGCNPDLRLRGHNTEGYGLSWSPFKHGHLLSGSDDAQICLWDINVPAKNRVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSATNKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKISSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTAEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMLPEEAV
B8LS29______________MAKDEEEFRGEMEERLVNEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDREEPPGKDYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAENDARQYDDERGEIGGFGCANGKVQVIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPQDGGCNPDLRLRGHNTEGYGLSWSPFKHGHLLSGSDDAQICLWDINAPAKNKVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSAANKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKITSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMPPEETL

SNPs (tot: 3)

Position	C %	T %	Probability
1881	10	90	0.999898
1886	10	90	0.999898
1959	93	6	0.999364

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain