SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8054

Length: 1567 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8054

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gb\|AAK49607.1\|AF372891_1 AT5g10730/MAJ23_90 [Arabidopsis thaliana] gb\|AAL15353.1\| AT5g10730/MAJ23_90 [Arabidopsis thaliana] gb\|AAL91210.1\| putative protein [Arabidopsis thaliana	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Putative uncharacterized protein AT5g10730	-	-	9.077e-09	-

Source	Gene names
Sma3	AT5g10730; At1g32220; At5g10730; At5g15910; CHLREDRAFT_117171; F1N13_50; F3C3.2; GSVIVT00008809001; GSVIVT00015700001; OJ1008_F08.11; OSJNBb0118P14.7; Os02g0556100; Os04g0403500; OsI_07649; OsI_07650; OsI_15758; OsJ_07133; OsJ_14672; PHYPADRAFT_133255; PH

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G10730.1	NAD(P)-binding Rossmann-fold superfamily protein chr5:3390822-3392947 REVERSE LENGTH=287	64%
RefSeq	Arabidopsis thaliana	NP_568236.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002308721.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ74

Fln msg:

Fln protein: MGESARVRYIFVATKNTFYRLLKHTSARLLLPDTGLIHFSSLLGLNFEELLNWKTMMKSRLLGIRSRAPRLWGFVCSSNPVRQLSTSIPDGHQEASKVEEAETVYGSPPQQDKLLILGGNGFLGTHVCKEGLKHGLHISSLSRSGRPTIQESWTNEVAWHQGNLFEPERWRHALDGVSAVISCVGGFGSNEAMYKINGTANIQAIQAAAESGVKRFVYISAADFGFASFLLRGYYEGKRAAEKELMSKFPYGGVILRPGFIYGTRQVGSLKIPLGVVGAPLEMVLRNAKSASQIPVIGPLLLPPVKASSVAKAAVRAATDVAFPPGIIDVWGIIRHTDH*

Protein Length: 341

Fln nts: _-_ATGGGGGAAAGCGCAAGAGTGCGGTATATATTTGTGGCCACTAAAAACACGTTCTACCGCCTTCTGAAGCACACGTCTGCTCGTTTACTTCTGCCAGACACCGGGCTGATTCATTTTTCTTCTCTATTGGGTTTGAATTTTGAAGAATTATTGAATTGGAAAACAATGATGAAATCCCGGCTTCTAGGCATCCGATCTCGAGCGCCTCGGCTTTGGGGTTTTGTATGTTCTTCCAATCCAGTTAGACAACTATCTACATCAATTCCTGATGGACATCAAGAAGCCTCAAAGGTTGAGGAAGCTGAAACTGTGTATGGAAGTCCACCGCAACAAGATAAGCTGCTTATACTAGGTGGAAATGGATTTCTTGGCACACATGTTTGCAAAGAAGGCCTCAAACATGGTCTTCATATCTCAAGTCTCAGCAGGTCAGGAAGGCCAACAATACAAGAGTCCTGGACAAATGAAGTGGCATGGCATCAAGGAAACCTATTTGAACCCGAAAGATGGAGACATGCACTAGATGGAGTATCTGCAGTGATATCATGTGTTGGTGGCTTTGGATCAAATGAAGCTATGTACAAAATCAATGGAACTGCAAACATTCAGGCAATTCAAGCTGCTGCTGAATCTGGTGTGAAGCGGTTTGTGTACATATCAGCTGCTGATTTTGGGTTTGCATCTTTCTTGTTGCGAGGTTATTATGAGGGAAAGAGAGCTGCAGAAAAAGAGCTGATGTCAAAATTTCCATATGGAGGTGTGATTCTCAGGCCTGGATTCATTTATGGGACTCGCCAAGTTGGAAGCTTAAAAATTCCATTGGGTGTTGTGGGCGCCCCACTGGAAATGGTTTTACGAAATGCAAAATCTGCGTCACAAATTCCTGTTATCGGGCCACTATTATTACCCCCTGTCAAGGCATCATCCGTGGCAAAAGCTGCTGTTCGAGCAGCAACTGATGTTGCATTTCCTCCTGGAATTATTGATGTATGGGGCATCATTCGTCACACAGATCATTGA___GAAAACAATACGCATTTATTTTGTTACAAAAGGGTGTTCGTTCATTAAAATGGCTGAATAAAGTGCATTTATATGTAATTGCCACAAATTTCCATCTACGTGTAGGGATGCAACGCAGAAGTTAATTTGGACCAAGGGTTCAAGGGTTGAATATAACTGGCTGAGGGTCATCTAGATACATTTTGAGTGGGTTTTCTTCCATTTCAGGCATGATCCTTCTTTTAAGGAAAAAGTCAACTAGTTTTGACCAAGTTCTGCGAAAACAATTATTGTTTTTAATTTATTTGTAATAATTTCAAGTTATGTTGGTAAAGATATATTAGTTTTCACATACATATCATCCCATGCAAAATGGCTCTATGGCAGCTTTAAAAATCATAGTGAAGCCATGTCCTCTTGATTTTCCACAAAGAGACTACCTGATTCAGGGGCATTTTGCCTCCAAGTCAAAATGTATTTTGACTAGGCTAGGGGTGTTTTCATTTACCAAGGGGTTAGTTCCCTAATTGTGTGAAATTGTTAATTAATGTATTTTCCTTAAGTTTTC

Fln Alignment:

Contig8054___DKLLILGGNGFLGTHVCKEGLKHGLHISSLSRSGRPTIQESWTNEVAWHQGNLFEPERWRHALDGVSAVISCVGGFGSNEAMYKINGTANIQAIQAAAESGVKRFVYISAADFGFASFLLR-GYYEGKRAAEKELMSKFPYGGVILRPGFIYGTRQVGSLKIPLGVVGAPLEMVL
C0PQ74______________EKIIVLGGSGFVGSAICKAAVARGIEAVSLSRLGRPTYIDSWVDQVTWVAGDVFYAD-WDGLLRGATAVVSTLGGFGTNEQMEKINGEANVLAVDAASKAGIPKFILISVHDYNLPSFLLNSGYFSGKRRAETEVLSKYPNSGTVLRPGFIYGKRKVNGFEIPLDLIGQPLEKFL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
588	21	78			1.0
608	71		28		1.0
834		14		85	0.993533
895		85		14	0.993533
951	20		80		0.995493
1033		33		66	0.997452
1127	25		75		1.0
1211	27		72		1.0
1379		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain