SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8038

Length: 997 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8038

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FGGY family of carbohydrate kinase [Arabidopsis thaliana] gb\|AEE85751.1\| FGGY family of carbohydrate kinase [Arabidopsis thaliana]	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	AT4G30310; AT4g30310; At4g30310; GSVIVT00031422001; Os02g0177900; OsJ_05603; P0504A05.27-1; POPTRDRAFT_262325;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate kinase, FGGY	IPR000577	-	-
Sma3	Carbohydrate kinase, FGGY-related	IPR006003	-	-
Sma3	Carbohydrate kinase, FGGY, N-terminal	IPR018484	-	-
Sma3	Carbohydrate kinase, FGGY, C-terminal	IPR018485	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30310.2	-	77%
RefSeq	Arabidopsis thaliana	NP_194760.2	FGGY family of carbohydrate kinase [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002324482.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK74

Fln msg: Distance to subject end: 211 aas, your sequence is shorter than subject: 332 - 575

Fln protein: FGSASSPLQIWKEGDCIEQSSTDIWHAVCAATRAACKLAKVSGENISSVGFAATCSLVAVGADDSPVTVSWSGDARRNVIVWMDHRAVEQAERINACNSPVLQYAGGALSPEMEPPKLLWVKENLPESWAMAFRWMDLTDWLTYRSTEDDTRSLCTTVCKWTYLGHAHMQQMNSKDSEAMDACGWDDVFWEEIGLGDLVEGRYTKIGRSMAFPGHPLGTGLTARAAKELGLMEGTPVGTSLIDAHAGGIGVIESVPSPNLNFKEDELEALCHRMVLVCGTSTCHMAISQKKNFIPGVWGPFWSAMVPELWLTEGGQSATGALLDHMVENHAA

Protein Length: 333

Fln nts: TTTTGGTTCAGCCAGCAGTCCTTTACAAATATGGAAGGAGGGAGACTGTATAGAGCAATCATCAACAGATATATGGCATGCAGTCTGTGCAGCAACCAGAGCAGCATGCAAATTGGCAAAAGTGTCTGGTGAAAACATTTCCAGTGTGGGTTTTGCTGCTACGTGCTCTCTTGTTGCTGTGGGTGCGGATGACTCTCCTGTTACTGTTTCTTGGAGTGGTGATGCAAGACGAAATGTAATAGTTTGGATGGATCACAGAGCTGTAGAACAGGCAGAGCGCATCAATGCATGCAATTCACCTGTGTTACAGTATGCTGGTGGTGCACTTTCCCCAGAAATGGAACCTCCTAAGCTTTTGTGGGTGAAGGAAAATTTACCAGAATCTTGGGCCATGGCATTCAGGTGGATGGACCTGACTGACTGGCTAACATACAGGTCCACTGAAGATGATACCCGTAGCTTATGCACGACAGTCTGCAAATGGACCTACCTAGGTCATGCTCACATGCAGCAGATGAATAGCAAGGACAGTGAAGCGATGGATGCATGTGGATGGGATGATGTTTTCTGGGAGGAAATTGGTCTAGGAGACCTTGTCGAAGGACGCTACACTAAAATAGGAAGAAGTATGGCGTTTCCTGGACACCCTCTGGGTACTGGCCTAACAGCAAGAGCTGCAAAGGAACTTGGGCTGATGGAGGGAACTCCTGTTGGGACGTCATTAATTGATGCCCATGCTGGAGGCATAGGAGTTATTGAAAGTGTACCATCACCGAATCTAAATTTTAAAGAAGATGAACTGGAAGCACTTTGCCACAGAATGGTGTTAGTATGTGGTACATCTACATGCCACATGGCTATATCTCAGAAAAAAAATTTCATTCCAGGTGTCTGGGGGCCTTTTTGGTCAGCAATGGTACCAGAGTTATGGCTTACTGAAGGTGGACAGAGTGCAACTGGGGCTTTATTGGATCATATGGTTGAAAATCATGCTGCG

Fln Alignment:

Contig8038___GSASSPLQIWKEGDCIEQSSTDIWHAVCAATRAACKLAKVSGENISSVGFAATCSLVAVGADDSPVTVSWSGDARRNVIVWMDHRAVEQAERINACNSPVLQYAGGALSPEMEPPKLLWVKENLPESWAMAFRWMDLTDWLTYRSTEDDTRSLCTTVCKWTYLGHAHMQQMNSKDSEAMDACGWDDVFWEEIGLGDLVEGRYTKIGRSMAFPGHPLGTGLTARAAKELGLMEGTPVGTSLIDAHAGGIGVIESVPSPNLNFK-EDELEALCHRMVLVCGTSTCHMAISQKKNFIPGVWGPFWSAMVPELWLTEGGQSATGALLDHMVENHAA
B8LK74______________GSASSPLQIWKEGDCIEQSSTDIWHAVCAATRGACKLANVSGENIASVGFAATCSLVAVGADDSPVTVSWSGDARRNVIVWMDHRAVEQAERINAYNSPVLQYAGGALSPEMEPPKLLWVKENLPESWAMAFRWMDLTDWLTYRATEDDTRSLCTTVCKWTYLGHAHMQQMNSRDSEAMDACGWDDVFWEEIGLGDLVEGRYTKIGRSMAFPGHPLGTGLTERAAKELGLMEGTPVGTSLIDAHAGGIGVIESVPLPNIKFKEEEELEALCHRMVLVCGTSTCHMAISQKKVFIPGVWGPFWSAMVPELWLTEGGQSATGALLDHMVENHAA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
451	83		16		0.994512
486	83		16		0.994512
942	66	33			0.997452
943	33		66		0.997452
944			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain