SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8007

Length: 2033 nt

UniGene Fasta

>sp_v3.0_unigene8007
AGGCAACAATTTAACGGCTCGGTACCCAGTTTATTCTGGGGACTTCCTCACGTCTCGCTGCTGGAGCTCAAGGACAATTATTTTGAAGGATTTATTTCTCCCGGCATTGCCGACGCTAAGAATCTCTCACAGCTCGTCATCAACGGCAACACATTTACCGGCAGCCTGCCTACAGAAATCGGTGAGCTACGGAACCTCAGCGAGATAATCGCTAGCAATAATTTACTCACTGGTGCTTTGCCTTCCAGCTTGGGGAAGCTGCAACTGCTTGGAAAGCTGGACCTTAGCAATAACCAGCTAAGCGGCGAGCTTCCTGCTGAAATCAGTTCGTGCAAACAGCTTGGAGAGATCAATCTTTCAAAGAACCAGCTCTCCGGTTCGATTCCTGCCAGTGTCGGTACTTTGCCGGTGCTTAATTATTTAGATCTCTCGGACAATCTTCTCACCGGGCCGATCCCTTCCGAGCTCGGTAATCTGAAGCTGAATACCTTCGATGTCTCGGACAACCGTTTGTCTGGTGCAGTTCCTTTGGCTTTTGAAAATCTGGTGTATGAAAAGAGTTTTCTGGGAAATCCCGAGCTGTGTAGCCGCGAGGCCTTTAATGGCACCAAGTCCTGTTCTGAAGTACGTAGTGAAAAGGCTAAGCGCCAGCGTTGGTGGTGGTTGCTTCGTTGCTTGTTTGCACTGTCTATTATTATTTTCGTCCTTGGACTCGCGTGGTTTTACAGAAGGTACCGAAACTTTGCAAATGCTGAGAGGAAAAAATCTGTGGACAAATCTTCGTGGATGCTGACTTCATTTCACAGGTTGGGATTCAGTGAATACGAGATTCTGGATTGCTTGGATGAAGATAATGTTATTGGAAGCGGCGGGGCCGGTAAGGTTTACAAGGCCACATTGAGCAATGGTGAATTAGTGGCCATCAAGAGGCTTTGGAGCAATGGTAAAACCAATGCTTCCACTGATAATGGTTTCCAAGCAGAGGTGGATACACTGGGGAAGATCAGGCATAAGAATATCGTGAAGCTATGGTGCTGTTGTAGTAAGAGTGATTCCAATCTGTTGGTCTATGAGTACATGCCTAATGGGAGTCTGGGAGATCTTCTTCATGGACCTAAGGCTAGTGTCCTTGACTGGCCCATAAGATACAAGATTGCCCTTGGAGCAGCTCAGGGGCTGGCATATCTTCATCATGGTTGTGTACCATCCATTGTTCACAGAGACGTGAAATCCAATAATATTTTGCTGGATGAGGATTATGGGGCTCATGTTGCTGATTTTGGTGTCGCGAAGTTTCTGCAGAGCTGCGGCAGTGGGGCTGATTCTATGACTGCAATTGCTGGGTCCTATGGCTACATAGCTCCAGAGTATGCCTACACTCTCAAGGTGAATGAAAAAAAGTGACATCTATAGTTTTGGAGTTGTGATCTTGGAGCTGGTAACTGGCAGGCGGCCAGTAGATCCAGAGTTTGGAGAGAACAAAGACCTTGTGAAGTGGCTGTGCAATAAGATAGAGACAAAGAATGGATTGAATGAAGTGTTGGATCCCAAGCTTGTGGATTGCTTCAAGGAGGAAATGACTATGGTTATGAAAGTAGGGCTTCTCTGCACAAGTGTCCTGCCCATTAACAGGCCATCAATGAGGAGGGTGGTAGAGATGCTGCAGGAAGCCAACCCCCATCACAAGGCCAAGGCAACTGCCAAGGATGGAAAATTGTCTCCTTACTATTACGAGGAACCCACCATTGGCATTGTATAGGCATGATGGTAATTGCATCTGGCCTGGACTTTTCTTCTTTGGCCTCTGTATTTACTGCTACTTTGTAGCTTCTGCGCTTGCTTAGCTCTTGTTCATGTGCAACTTTAAAATCTTACTCTGATACTGTTACCCAAAAGGAGCTTGCCCCTGTAACTTTTAGGGTATATTTACAATGAGAATAGAATGGGTAGAGGCTCATGAATGAAGAGGAACATGTGTCTACCCACTTGTGGGCCTTTGTATCTTTGTTTTTAATAGATCTGCCTTTTGAGTC

Ace file of the UniGene sp_v3.0_unigene8007

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL	-	-	0.0	89%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	92%
Sma3	Receptor protein kinase CLAVATA1, putative	-	-	1.467e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	9.383e-22	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	1.02e-19	-

Source	Gene names
Sma3	AT1G28440; AT1G34110; AT1G75820; AT3G49670; AT4G20270; AT4G28490; AT4G28650; AT4g20270; AT5G25930; AT5G48940; AT5G49660; AT5G61480; AT5G65700; AT5G65710; At1g09970; At1g09970/F21M12.36; At1g17230; At1g28440; At1g72180; At1g75820; At3g19700; At3g24240; At3

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	endosperm development	GO:0009960	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	interspecies interaction between organisms	GO:0044419	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	floral organ development	GO:0048437	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G28440.1	HSL1 HAESA-like 1 chr1:9996914-10000171 FORWARD LENGTH=996	55%
RefSeq	Arabidopsis thaliana	NP_174166.1	receptor-like protein kinase HSL1 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002305776.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Overlapping hits, possible frame ERROR between 1398 and 1394, your sequence is shorter than subject: 587 - 998

Fln protein: RQQFNGSVPSLFWGLPHVSLLELKDNYFEGFISPGIADAKNLSQLVINGNTFTGSLPTEIGELRNLSEIIASNNLLTGALPSSLGKLQLLGKLDLSNNQLSGELPAEISSCKQLGEINLSKNQLSGSIPASVGTLPVLNYLDLSDNLLTGPIPSELGNLKLNTFDVSDNRLSGAVPLAFENLVYEKSFLGNPELCSREAFNGTKSCSEVRSEKAKRQRWWWLLRCLFALSIIIFVLGLAWFYRRYRNFANAERKKSVDKSSWMLTSFHRLGFSEYEILDCLDEDNVIGSGGAGKVYKATLSNGELVAIKRLWSNGKTNASTDNGFQAEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPSIVHRDVKSNNILLDEDYGAHVADFGVAKFLQSCGSGADSMTAIAGSYGYIAPEYAYTLKVNxxxSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIETKNGLNEVLDPKLVDCFKEEMTMVMKVGLLCTSVLPINRPSMRRVVEMLQEANPHHKAKATAKDGKLSPYYYEEPTIGIV*

Protein Length: 588

Fln nts: AGGCAACAATTTAACGGCTCGGTACCCAGTTTATTCTGGGGACTTCCTCACGTCTCGCTGCTGGAGCTCAAGGACAATTATTTTGAAGGATTTATTTCTCCCGGCATTGCCGACGCTAAGAATCTCTCACAGCTCGTCATCAACGGCAACACATTTACCGGCAGCCTGCCTACAGAAATCGGTGAGCTACGGAACCTCAGCGAGATAATCGCTAGCAATAATTTACTCACTGGTGCTTTGCCTTCCAGCTTGGGGAAGCTGCAACTGCTTGGAAAGCTGGACCTTAGCAATAACCAGCTAAGCGGCGAGCTTCCTGCTGAAATCAGTTCGTGCAAACAGCTTGGAGAGATCAATCTTTCAAAGAACCAGCTCTCCGGTTCGATTCCTGCCAGTGTCGGTACTTTGCCGGTGCTTAATTATTTAGATCTCTCGGACAATCTTCTCACCGGGCCGATCCCTTCCGAGCTCGGTAATCTGAAGCTGAATACCTTCGATGTCTCGGACAACCGTTTGTCTGGTGCAGTTCCTTTGGCTTTTGAAAATCTGGTGTATGAAAAGAGTTTTCTGGGAAATCCCGAGCTGTGTAGCCGCGAGGCCTTTAATGGCACCAAGTCCTGTTCTGAAGTACGTAGTGAAAAGGCTAAGCGCCAGCGTTGGTGGTGGTTGCTTCGTTGCTTGTTTGCACTGTCTATTATTATTTTCGTCCTTGGACTCGCGTGGTTTTACAGAAGGTACCGAAACTTTGCAAATGCTGAGAGGAAAAAATCTGTGGACAAATCTTCGTGGATGCTGACTTCATTTCACAGGTTGGGATTCAGTGAATACGAGATTCTGGATTGCTTGGATGAAGATAATGTTATTGGAAGCGGCGGGGCCGGTAAGGTTTACAAGGCCACATTGAGCAATGGTGAATTAGTGGCCATCAAGAGGCTTTGGAGCAATGGTAAAACCAATGCTTCCACTGATAATGGTTTCCAAGCAGAGGTGGATACACTGGGGAAGATCAGGCATAAGAATATCGTGAAGCTATGGTGCTGTTGTAGTAAGAGTGATTCCAATCTGTTGGTCTATGAGTACATGCCTAATGGGAGTCTGGGAGATCTTCTTCATGGACCTAAGGCTAGTGTCCTTGACTGGCCCATAAGATACAAGATTGCCCTTGGAGCAGCTCAGGGGCTGGCATATCTTCATCATGGTTGTGTACCATCCATTGTTCACAGAGACGTGAAATCCAATAATATTTTGCTGGATGAGGATTATGGGGCTCATGTTGCTGATTTTGGTGTCGCGAAGTTTCTGCAGAGCTGCGGCAGTGGGGCTGATTCTATGACTGCAATTGCTGGGTCCTATGGCTACATAGCTCCAGAGTATGCCTACACTCTCAAGGTGAATxxxxxxxxxAGTGACATCTATAGTTTTGGAGTTGTGATCTTGGAGCTGGTAACTGGCAGGCGGCCAGTAGATCCAGAGTTTGGAGAGAACAAAGACCTTGTGAAGTGGCTGTGCAATAAGATAGAGACAAAGAATGGATTGAATGAAGTGTTGGATCCCAAGCTTGTGGATTGCTTCAAGGAGGAAATGACTATGGTTATGAAAGTAGGGCTTCTCTGCACAAGTGTCCTGCCCATTAACAGGCCATCAATGAGGAGGGTGGTAGAGATGCTGCAGGAAGCCAACCCCCATCACAAGGCCAAGGCAACTGCCAAGGATGGAAAATTGTCTCCTTACTATTACGAGGAACCCACCATTGGCATTGTATAGGCATGATGGTAATTGCATCTGGCCTGGACTTTTCTTCTTTGGCCTCTGTATTTACTGCTACTTTGTAGCTTCTGCGCTTGCTTAGCTCTTGTTCATGTGCAACTTTAAAATCTTACTCTGATACTGTTACCCAAAAGGAGCTTGCCCCTGTAACTTTTAGGGTATATTTACAATGAGAATAGAATGGGTAGAGGCTCATGAATGAAGAGGAACATGTGTCTACCCACTTGTGGGCCTTTGTATCTTTGTTTTTAATAGATCTGCCTTTTGAGTC

Fln Alignment:

Contig8007___QFNGSVPSLFWGLPHVSLLELKDNYFEGFISPGIADAKNLSQLVINGNTFTGSLPTEIGELRNLSEIIASNNLLTGAXXXXXXXXXXXXXXXXXNNQLSGELPAEISSCKQLGEINLSKNQLSGSIPASVGTLPVLNYLDLSDNLLTGPIPSELGNLKLNTFDVSDNRLSGAVPLAFENLVYEKSFLGNPELCSREAFNGTKSCSEVRSEKAKRQRWWWLLRCLFALSIIIFVLGLAWFYRRYRNFANAERKKSVDKSSWMLTSFHRLGFSEYEILDCLDEDNVIGSGGAGKVYKATLSNGELVAIKRLWSNGKTNASTDNGFQAEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPSIVHRDVKSNNILLDEDYGAHVADFGVAKFLQSCGSGADSMTAIAGSYGYIAPEYAYTLKVNxxSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIETKNGLNEVLDPKLVDCFKEEMTMVMKVGLLCTSVLPINRPSMRRVVEMLQEANPHHKAKATAKDGKLSPYYYEEPTIGIV
Q19AV8______________KFNGSVPSSFWGLPHISLLELKDNNFEGLISPDIANAKCLSQLVINGNTFTGSLPTEIGELRNLSEIIASNNFLTGALPPSVGKLQQLGKLDLSNNQLSGELPAEISSCKQLGEINLSKNQFSGSIPASVGTLPVLNYLDLSDNLLTGLIPSEFGNLKLNTFDVSNNRLSGAVPLAFANPVYEKSFLGNPELCSREAFNGTKSCSEERSERAKRQSWWWLLRCLFALSIIIFVLGLAWFYRRYRNFANAERKKSVDKSSWMLTSFHRLRFSEYEILDCLDEDNVIVSDGASNVYKATLNNGELLAIKRLWSIYKTNASNDNGFQAEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVKSNNILLDEDYVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNxxSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIEKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQEANPHHKAKATGKDGKLSPYYCEEPTICIV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1618	14	85			0.993533
1619	14	85			0.993533
1644			85	14	0.993533
1741		44	55		1.0
1778		77		22	0.999999
1874	85	14			0.993533
1875	14	85			0.993533
1880	85		14		0.993533
1882	85			14	0.993533
1883		85	14		0.993533
1887	16			83	0.994512
1888	80	20			0.995493
1895	80			20	0.995493
1896	80			20	0.995493
1899	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain