SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8005

Length: 1656 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8005

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	62%
Sma3	SLT1 protein	-	-	4.111e-17	-

Source	Gene names
Sma3	AT3G12570; At2g37570; At2g37570/F13M22.7; At3g12570; At5g02480; GSVIVT00018505001; GSVIVT00021302001; GSVIVT00024356001; LOC_Os03g16910; Os01g0151100; Os01g0840200; Os03g0277100; OsI_00421; OsI_04376; OsI_10988; OsJ_00395; OsJ_04025; OsJ_10335; P0009G03.1

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	protein insertion into membrane	GO:0051205	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Membrane insertion protein, OxaA/YidC	IPR001708	-	-
Sma3	Heat shock protein Hsp20	IPR002068	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37570.1	SLT1 HSP20-like chaperones superfamily protein chr2:15761466-15762950 REVERSE LENGTH=494	56%
RefSeq	Arabidopsis thaliana	NP_973625.1	protein sodium-and lithium-tolerant 1 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002332579.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A2XF46

Fln msg: your sequence is shorter than subject: 238 - 451

Fln protein: MYNNNINNINNINNNGNCASSSAKRLLNGSGLNLSTQLVVSDAGIELSPGCGVNKRRKEFSPLSNDEDCCLQPYPDNMDVHHQMEPTWANDFSGVMRQACGPVTAAKTIYEDDKGYLIMVSLPFTDIQRVRVSWRNTVSHGIVKVHCISTARTPYIKRGDRTLKLTDPSPEHCPPGEFVREIALATRIPENAELEAYCIEDGAGLEIMVPKHHVLSEEREVRVFLRHQLGTNELLLT*

Protein Length: 239

Fln nts: AATGTACAATAACAATATTAATAACATCAATAACATCAATAATAATGGGAATTGCGCATCTTCTTCTGCTAAGAGGCTGTTGAACGGGTCTGGGCTGAACCTTTCCACTCAGCTCGTGGTCAGCGATGCCGGCATCGAGCTTTCGCCAGGATGCGGTGTGAATAAAAGGAGGAAGGAGTTCTCTCCTCTGAGCAATGATGAAGATTGCTGCCTGCAGCCTTATCCAGATAATATGGACGTCCATCATCAGATGGAGCCAACATGGGCTAATGATTTCTCCGGTGTCATGAGACAGGCCTGTGGTCCCGTTACCGCAGCCAAGACTATCTATGAGGACGACAAAGGCTATCTGATAATGGTGAGTCTGCCTTTTACTGATATTCAGAGGGTTAGGGTGTCGTGGCGGAACACTGTATCTCATGGCATTGTGAAGGTTCACTGCATTAGCACTGCTCGGACTCCCTATATCAAGAGAGGGGACAGAACATTGAAGCTCACAGATCCGTCCCCCGAGCATTGCCCGCCTGGAGAATTTGTGAGAGAGATAGCGCTTGCCACACGTATTCCTGAAAATGCAGAGCTTGAAGCTTATTGTATTGAGGACGGTGCAGGTCTAGAAATTATGGTTCCCAAGCATCATGTTTTATCTGAAGAACGAGAAGTTCGAGTATTCCTTCGCCATCAGTTGGGCACTAACGAGTTGCTGCTGACTTAA___AATTGGGAGTTGGAGAGTTTTCCGAGAGGGATGGATGGTTGCTATGGTCAGACTTCTATTGTTTACTAATCTTGTACCATAATAGAAATCTAGGACATATAGAAACCGCATTATTTCCATTGTAATATTCATCTCTGGAGCTCCTTGCTCTTCTTCCCCTCCTCCTAATCTTTTCCTTTTCTTCTGCATTTTGACTCAGGCTTTGTAAGCAACTGCTCCTGAAGGTACCCCACCCGAAGCAAGAGGTGCCTATCCTTATCAATACTGATATTCTGTATTAATTTTTGGATTTTGCTTTTGAATTATGCAGTGGGGGAGATTCATGACATGCTCTTTCTAGAATAGTTCGGTGATTTGGGAATGCGTTTTCTTCTTGTTAAGTTCCATTATTGGTTATAGAGGAGGTGAATCTGGCTGTTGTGCATTCTCATCATGTTTAGGTGGCCCTGTACTCTACAGGAACTATTTCATTAACTTTGTTTGTTAAGATTAACGCATCTTTCAGGGTAAAGGTTATATATGGATTAAATACAGTGGGATGATGAAATTGGTTAAAATCCACTTTCGAAGGAAGAAATATTGTGGCGGGCATGCAATTAGGTCCAGATGGATATATTCTTTAGACTCTAGAGTATTTACTGAAATTGGTGTAAGTGCCCCTGAGGTGCCATGTCAAATTGTAGGAATGATTAACTCGTTCTTTATGCACTTTGCACTATGTTCAAAGTTGTTGTACATTCTAATTGTAGTCCGGAGAAGGAACCCTCGGGTTTAGGGTTCGTAAATAAGGCTCAAAGAATTGATGATGCCCATTGCTCTTTTTTTGAGGAGGGTTGTACACCTAAGAATTCATAGGTTCAAAGAGCTGCTGTTGGCAGATCAATATTTGTAATGACTGGTTGAACTTTTTCTGCAATGTATTAAGAAACACTCCGCAGTAA

Fln Alignment:

Contig8005___KRLLNGSGLNLSTQLVVSDAGIELSPGCGVNKRRKEFSPLSNDEDCCLQPYP--DNMDVHHQMEPTWANDFSGVMRQACGPVTAAKTIYEDDKGYLIMVSLPFTDIQRVRVSWRNTVSHGIVKVHCISTARTPYIKRGDRTLKLTDPSPEHCPPGEFVREIALATRIPENAELEAYCIEDGAGLEIMVPKHHVLSEEREVRVFLR
A2XF46______________KKLLNGSGLNLSTQPSNHSSGDGLDIPNICNKRRKDSSPTAMEEDCSNSNSDKVQDMEVSHTFEPSWMNDFTGVMRHASGPVTAAKTIYEDSKGYLIIISLPFADIQRVKVSWKNTLTNGIVKVSCTSVGRMPFLKRHDRTFKLVDPTPEHCPPGEFIREIPLPTRIPEDATLEAYCDESGTGLEIIVPKYRVGPEEHEVHVSMR

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
264	75		25		0.996473
300	20	80			0.995493
303			20	80	0.995493
366		16		83	0.994512
542			90	10	0.90298
543	90		10		0.90298
545	90		10		0.90298
549	90		10		0.90298
559	90		10		0.90298
1043	87		12		0.992554
1050	14	85			0.993533
1052			14	85	0.993533
1053			28	71	1.0
1056	71		28		1.0
1057			85	14	0.993533
1058	85	14			0.993533
1061	83	16			0.994512
1062	16		83		0.994512
1071			16	83	0.994512
1074			83	16	0.994512
1381		13	86		1.0
1604	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain