SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7992

Length: 1252 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7992

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL	-	-	2.0e-40	100%
FL-Next	tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	100%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cold shock protein	IPR011129	-	-
Sma3	Cold-shock protein, DNA-binding	IPR002059	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3		IPR013084	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G38680.1	GRP2, CSDP2, CSP2, ATCSP2 glycine rich protein 2 chr4:18072240-18072851 REVERSE LENGTH=203	6.0e-30	70%
RefSeq	Arabidopsis thaliana	NP_195580.1	glycine rich protein 2 [Arabidopsis thaliana]	8.0e-30	70%
RefSeq	Populus trichocarpa	XP_002305502.1	predicted protein [Populus trichocarpa]	2.0e-26	62%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
218	66		33		0.99834
324	75		25		0.997389
325	75			25	0.997389
326		75		25	0.997389
327	75	25			0.997389
329		25		75	0.997389
632	12		87		0.992554
637	11		88		0.923564
641		88	11		0.923564
642			11	88	0.923564
997	2		97		0.998771
1008		0		96	0.999991
1074			0	96	0.996891
1113	0	4		94	1.0
1138	3		96		0.99989
1139	2		97		0.930363
1141	3	12		84	1.0
1144	88			3	0.998862
1145	87		12		1.0
1146	21			69	1.0
1147	22	77			1.0
1196	20		80		0.995493

SSRs (tot: 3)

Start position	End position	Sequence	Length
387	398	GGT GGT GGT GGT	12
402	415	GGC GGC GGC GGC GG	14
594	607	GGC GGC GGC GGC GG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain