SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7976

Length: 3349 nt

UniGene Fasta

>sp_v3.0_unigene7976
AACGATTGATATATACATTATATATATATTTTTTTGAGGTATGAAGAGGGACGGGCAATATATGTATTGGGAATCTGGGACCCTCTATGGACTGTGGCTGAAGCATTGGAAGTTATACAGCTATTTCAGTAATTTTGACAATATATTAGACGAAGTGGGTCTACCTCTTTCTTTACGCGTTTGACAAAGGGGTTGGCTTCTCCTAACTAATCATTCCCTTGCCAGTCAAAGGAGTTTATCACTTGTGGGTATGAATGAATAAGTGCATTAGGCAAGCAAGGCGTTCATGACCAGGCATGCCAATGACGACAGCTGGTGCATTTGGTTTGTTTCTATACAACAACATTGACAGACATTGTTGAAGGAGGAGACCCATGTGCATCTGTTTCCTTAGCCAACAGGGCCAGCTGCCATCATCGTTTCGTCCATTACCAAGGGAATTGGATCGTTGATTGATATCTCTCTGAAAGTACAGAGCCTTGGAAGGCTTAGTTCTCCTTGGTCAACTATCACTGAAAGGTATCTTTCGACGTCAATTGTGTTTCAAGATCCAAATAAAACAAGATTTCAAATTTATAATCTGGGTCCTGGGATGTGCACCTTTTATGCCATTGTTATGACAAAGACATAGTAGAGCATAAAAGATTTTGAAGTAATAGTGGTTTTTAGTTGCTGAAGGTGGATATCATGTCTATGTTAAGGCCTCTAGACCCGTCTGAGCGTCCAAGCAGTGAGAATGACATATATGGAGGAAGAAGCAGCAGAAATGGCCCACCTGGTACAATAAATACGTTGAATAAAATGAGAGTACTGTATAAACCTGAACTCGGGGGTATTGCCATAAGCTCTCATTCATATCTTGATTCTTCTCCAGCAGGATTGGATCCCCGAGTAACACAGCTACTGTCCAAGAGTTCATTGCCTGATGTTGAGAGGCAAGCTATATTCAGGGAAGCAAAACAACACAACCACAGCTCACCCATATCACCTCTGTCTCCTATGGATTCTGTGGGAATATCTGACTCTTCATGTCACAGTGCTGGATCTTATCATCAATATACAAATAATACTGCTTTGTTTCATTCTCAAGGTTTTTCCTATAATCCCGCTACATTGGCCGAAGTTCTGGTATCCAGTGGAGGTCAATATCCTAGCATGCCTATTGTACAGAGTTCTGCTTCCCTCCAGAAATCTGTATCTAGTGAGAATCTCACAGGGGAACATACATCGGGTTACCTAAATTTTCCGTCACCAGATTGCCAAAGAGGAGCTATACATGGTAGTATCTTTGATGAAAACCCAGAATACATCAGGCAATGGCTGCAAGAGTTGGAGAGAGAACTTTTTAGTGATATTGATGAAGCAAGTATCATTAGCCCCACTCAAAACACATATATTGACAGGGAATGGGCAGACACAATAGAAAACCTTCTGTATGAGGATTCCCCTATGCATTCTCCGATGGAGAGTACAACCTTGAAGGATTATTCTAATGGCAGCATAGATTATTCCAGTGTTGCAAATATATCTGATTCATGTTCTGTTTCACAAACTAATTCTTTGCAACAAGAAGCATATGCATCAAATAGTCACCAGCAAGATATTGATCATCCAGGGAGCTCTCCCAAGCAGCTGTTAGTTCAATGTGCAACTGCAATATCTGAAGGTAAAGAAGAAATGGCATCACACATAATCACAAAATTGAGAGAGACAGTCTCAATTCAAGGAGACCCAATGGAAAGACTTGCAGCTTACATGGTGGAGGGTCTTGCTGCACGAATAGCATCTTCAGGAAAAGGATTATACAAAGCTTTGAATTGTAAAGAGCCACCAAGCACTGATACTTTATCTGCCATGCAAATATTATATGAAGTTTGTCCATATTTCAAATTTGGTTGCATGGTGGCCAATGGTGCAATTTGTGAAGCCTTCAAGGATGAGCAGAAGGTTCATATAATAGATTTTGATGTTGGGCAGGGCAGTCAGTACATAAGCCTCTTAAAGGCCCTTGCAGAAAGGCCTGGTGGGCCTCCACATTTGCGCATAACAGCAGTAGATGATCCTGAATCTGTAAGACATATTGTTGGGGGATTGGATATTGTGGGAATGCGGCTTGAACAATATGCAGAATCCATTGGTGCTTCTTTACAATTTATATCGATTACAAGAAAGGTTGGAGATGTCCAACCATGGATGCTTGATATAAATCCAGATGAGGTTTTAGCAGTCAACTTTGCATTCCAACTGCATCACATGCCCGATGAAAGTGTGTCTACAATGAACCCACGTGACCGGCTTTTAAGGATGGTGAAGTCTCTCAACCCTAAAGTGGTCACAGTTGTAGAACAAGAGGTTAACACTAATACTGCACCTTTCTTACCCCGCTTCATGGAAGCATTAAACTATTACTCATCAGTGTTTGAGTCTCTAGATGCTACACTTAAAAGGGATAGCAGAGATCGAATGAATGTTGAAAAACAATGCCTTGCCCGAGACATAGTGAACATAATTGCTTGTGAGGGGGAAGAAAGGATTGAGAGGTATGAAGTCGCAGGAAAATGGAGAGCTAGAATGACTATGGCAGGCTTTAGTGTGTATCCTCTCAGTGCTAATGTTAAGGACACAGTTAAATCTTTGCTCCGCCAATCATACTGCAATAGCTACAAGACTAAGGAAGAAGGAGGAGCTATGTATTTTGGATGGTTGGACAGAATTCTCATTGCAGCGTCTGCTTGGCATTGAGAAGCAAGGACTGTAAGAAGGTTCTTGTACAAGAATTTCTTACAATTTGTCAATACCATTGCAGAAATTACATCTGACTTTCATGTGCGTCAGGGAAGAGTTCAGAAACCTGACACTATAACTTTTTATAGGGGTAAAAGTTGAAACTAATTTAAGGAAACAGTGGTTTTCACCTGTCCTGTTCAACTAGGGATAATAGTCATAGTTATTCGTTTGTATTTTGCTTCCTTATGCAGGTAGAGAGGAAAATGCTAAGGCTTGCTAAAATCAGTGATATGCTCACCTGCACAGTGGGCAACTGGATAGAGACACAGTTACTATGTAACTTTCAGGAATTTATGCTTGACTAGCTGAAAAGTATTGGAATTTTTTCTTTTGGTTTGCTCTCGTGTCCTTGAGTAATCAACTGGATGAAAAATCAAGTCTATCTTTCAAATGTTTGAACCAGGACTATATCACTGATATTACAGCAATAAAAGTGGTTGAAATCTGAAGAAAATTTTTGACCTTTAACTGCATGGTAATTTAACTATATGTATACTTTGCTATGTTTTAGTTTTGGTTTCAATATTTTTTGTCTAATTTCAAAAGCAGCAACTTTCACAGG

Ace file of the UniGene sp_v3.0_unigene7976

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chitin-inducible gibberellin-responsive protein, putative n=1 Tax=Ricinus communis RepID=B9S2N0_RICCO	-	-	0.0	53%
FL-Next	sp=Scarecrow-like protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	GRAS family transcription factor	-	-	2.936e-26	-

Source	Gene names
Sma3	31.t00010; AT4G17230; AT5G48150; At1g21450; At1g50600; At2g04890; At4g17230; At5g48150; B1065E10.4; CIGR1; CIGR2; F11F12.8; F17J6.12; F1O13.2; F24J8.8; FCAALL.225; GRAS1; GRAS2; GRAS49; GRAS50; GRAS51; GRAS52; GRAS53; GRAS54; GRAS55; GRAS56; GRAS57; GRAS6

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G21450.1	SCL1 SCARECROW-like 1 chr1:7509721-7511502 FORWARD LENGTH=593	55%
RefSeq	Arabidopsis thaliana	NP_173566.1	scarecrow-like protein 1 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002302201.1	GRAS family transcription factor [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SDQ3

Fln msg: your sequence is longer than subject: 685 - 593

Fln protein: MSMLRPLDPSERPSSENDIYGGRSSRNGPPGTINTLNKMRVLYKPELGGIAISSHSYLDSSPAGLDPRVTQLLSKSSLPDVERQAIFREAKQHNHSSPISPLSPMDSVGISDSSCHSAGSYHQYTNNTALFHSQGFSYNPATLAEVLVSSGGQYPSMPIVQSSASLQKSVSSENLTGEHTSGYLNFPSPDCQRGAIHGSIFDENPEYIRQWLQELERELFSDIDEASIISPTQNTYIDREWADTIENLLYEDSPMHSPMESTTLKDYSNGSIDYSSVANISDSCSVSQTNSLQQEAYASNSHQQDIDHPGSSPKQLLVQCATAISEGKEEMASHIITKLRETVSIQGDPMERLAAYMVEGLAARIASSGKGLYKALNCKEPPSTDTLSAMQILYEVCPYFKFGCMVANGAICEAFKDEQKVHIIDFDVGQGSQYISLLKALAERPGGPPHLRITAVDDPESVRHIVGGLDIVGMRLEQYAESIGASLQFISITRKVGDVQPWMLDINPDEVLAVNFAFQLHHMPDESVSTMNPRDRLLRMVKSLNPKVVTVVEQEVNTNTAPFLPRFMEALNYYSSVFESLDATLKRDSRDRMNVEKQCLARDIVNIIACEGEERIERYEVAGKWRARMTMAGFSVYPLSANVKDTVKSLLRQSYCNSYKTKEEGGAMYFGWLDRILIAASAWH*

Protein Length: 686

Fln nts: AACGATTGATATATACATTATATATATATTTTTTTGAGGTATGAAGAGGGACGGGCAATATATGTATTGGGAATCTGGGACCCTCTATGGACTGTGGCTGAAGCATTGGAAGTTATACAGCTATTTCAGTAATTTTGACAATATATTAGACGAAGTGGGTCTACCTCTTTCTTTACGCGTTTGACAAAGGGGTTGGCTTCTCCTAACTAATCATTCCCTTGCCAGTCAAAGGAGTTTATCACTTGTGGGTATGAATGAATAAGTGCATTAGGCAAGCAAGGCGTTCATGACCAGGCATGCCAATGACGACAGCTGGTGCATTTGGTTTGTTTCTATACAACAACATTGACAGACATTGTTGAAGGAGGAGACCCATGTGCATCTGTTTCCTTAGCCAACAGGGCCAGCTGCCATCATCGTTTCGTCCATTACCAAGGGAATTGGATCGTTGATTGATATCTCTCTGAAAGTACAGAGCCTTGGAAGGCTTAGTTCTCCTTGGTCAACTATCACTGAAAGGTATCTTTCGACGTCAATTGTGTTTCAAGATCCAAATAAAACAAGATTTCAAATTTATAATCTGGGTCCTGGGATGTGCACCTTTTATGCCATTGTTATGACAAAGACATAGTAGAGCATAAAAGATTTTGAAGTAATAGTGGTTTTTAGTTGCTGAAGGTGGATATC_-_ATGTCTATGTTAAGGCCTCTAGACCCGTCTGAGCGTCCAAGCAGTGAGAATGACATATATGGAGGAAGAAGCAGCAGAAATGGCCCACCTGGTACAATAAATACGTTGAATAAAATGAGAGTACTGTATAAACCTGAACTCGGGGGTATTGCCATAAGCTCTCATTCATATCTTGATTCTTCTCCAGCAGGATTGGATCCCCGAGTAACACAGCTACTGTCCAAGAGTTCATTGCCTGATGTTGAGAGGCAAGCTATATTCAGGGAAGCAAAACAACACAACCACAGCTCACCCATATCACCTCTGTCTCCTATGGATTCTGTGGGAATATCTGACTCTTCATGTCACAGTGCTGGATCTTATCATCAATATACAAATAATACTGCTTTGTTTCATTCTCAAGGTTTTTCCTATAATCCCGCTACATTGGCCGAAGTTCTGGTATCCAGTGGAGGTCAATATCCTAGCATGCCTATTGTACAGAGTTCTGCTTCCCTCCAGAAATCTGTATCTAGTGAGAATCTCACAGGGGAACATACATCGGGTTACCTAAATTTTCCGTCACCAGATTGCCAAAGAGGAGCTATACATGGTAGTATCTTTGATGAAAACCCAGAATACATCAGGCAATGGCTGCAAGAGTTGGAGAGAGAACTTTTTAGTGATATTGATGAAGCAAGTATCATTAGCCCCACTCAAAACACATATATTGACAGGGAATGGGCAGACACAATAGAAAACCTTCTGTATGAGGATTCCCCTATGCATTCTCCGATGGAGAGTACAACCTTGAAGGATTATTCTAATGGCAGCATAGATTATTCCAGTGTTGCAAATATATCTGATTCATGTTCTGTTTCACAAACTAATTCTTTGCAACAAGAAGCATATGCATCAAATAGTCACCAGCAAGATATTGATCATCCAGGGAGCTCTCCCAAGCAGCTGTTAGTTCAATGTGCAACTGCAATATCTGAAGGTAAAGAAGAAATGGCATCACACATAATCACAAAATTGAGAGAGACAGTCTCAATTCAAGGAGACCCAATGGAAAGACTTGCAGCTTACATGGTGGAGGGTCTTGCTGCACGAATAGCATCTTCAGGAAAAGGATTATACAAAGCTTTGAATTGTAAAGAGCCACCAAGCACTGATACTTTATCTGCCATGCAAATATTATATGAAGTTTGTCCATATTTCAAATTTGGTTGCATGGTGGCCAATGGTGCAATTTGTGAAGCCTTCAAGGATGAGCAGAAGGTTCATATAATAGATTTTGATGTTGGGCAGGGCAGTCAGTACATAAGCCTCTTAAAGGCCCTTGCAGAAAGGCCTGGTGGGCCTCCACATTTGCGCATAACAGCAGTAGATGATCCTGAATCTGTAAGACATATTGTTGGGGGATTGGATATTGTGGGAATGCGGCTTGAACAATATGCAGAATCCATTGGTGCTTCTTTACAATTTATATCGATTACAAGAAAGGTTGGAGATGTCCAACCATGGATGCTTGATATAAATCCAGATGAGGTTTTAGCAGTCAACTTTGCATTCCAACTGCATCACATGCCCGATGAAAGTGTGTCTACAATGAACCCACGTGACCGGCTTTTAAGGATGGTGAAGTCTCTCAACCCTAAAGTGGTCACAGTTGTAGAACAAGAGGTTAACACTAATACTGCACCTTTCTTACCCCGCTTCATGGAAGCATTAAACTATTACTCATCAGTGTTTGAGTCTCTAGATGCTACACTTAAAAGGGATAGCAGAGATCGAATGAATGTTGAAAAACAATGCCTTGCCCGAGACATAGTGAACATAATTGCTTGTGAGGGGGAAGAAAGGATTGAGAGGTATGAAGTCGCAGGAAAATGGAGAGCTAGAATGACTATGGCAGGCTTTAGTGTGTATCCTCTCAGTGCTAATGTTAAGGACACAGTTAAATCTTTGCTCCGCCAATCATACTGCAATAGCTACAAGACTAAGGAAGAAGGAGGAGCTATGTATTTTGGATGGTTGGACAGAATTCTCATTGCAGCGTCTGCTTGGCATTGA___GAAGCAAGGACTGTAAGAAGGTTCTTGTACAAGAATTTCTTACAATTTGTCAATACCATTGCAGAAATTACATCTGACTTTCATGTGCGTCAGGGAAGAGTTCAGAAACCTGACACTATAACTTTTTATAGGGGTAAAAGTTGAAACTAATTTAAGGAAACAGTGGTTTTCACCTGTCCTGTTCAACTAGGGATAATAGTCATAGTTATTCGTTTGTATTTTGCTTCCTTATGCAGGTAGAGAGGAAAATGCTAAGGCTTGCTAAAATCAGTGATATGCTCACCTGCACAGTGGGCAACTGGATAGAGACACAGTTACTATGTAACTTTCAGGAATTTATGCTTGACTAGCTGAAAAGTATTGGAATTTTTTCTTTTGGTTTGCTCTCGTGTCCTTGAGTAATCAACTGGATGAAAAATCAAGTCTATCTTTCAAATGTTTGAACCAGGACTATATCACTGATATTACAGCAATAAAAGTGGTTGAAATCTGAAGAAAATTTTTGACCTTTAACTGCATGGTAATTTAACTATATGTATACTTTGCTATGTTTTAGTTTTGGTTTCAATATTTTTTGTCTAATTTCAAAAGCAGCAACTTTCACAGG

Fln Alignment:

Contig7976___FDENPEYIRQWLQELERELFSDIDEASIISPTQNTYIDREWADTIENLLYEDSPMHSPMESTTLKDYSNGSIDYSSVANISDSCSVSQTNSLQQEAYASNSHQQDIDHPGSSPKQLLVQCATAISEGKEEMASHIITKLRETVSIQGDPMERLAAYMVEGLAARIASSGKGLYKALNCKEPPSTDTLSAMQILYEVCPYFKFGCMVANGAICEAFKDEQKVHIIDFDVGQGSQYISLLKALAERPGGPPHLRITAVDDPESVRHIVGGLDIVGMRLEQYAESIGASLQFISITRKVGDVQPWMLDINPDEVLAVNFAFQLHHMPDESVSTMNPRDRLLRMVKSLNPKXXXXXXXXXXXXXAPFLPRFMEALNYYSSVFESLDATLKRDSRDRMNVEKQCLARDIVNIIACEGEERIERYEVAGKWRARMTMAGFSVYPLSANVKDTVKSLLRQSYCNSYKTKEEGGAMYFGWLDRILIAASAW
Q9SDQ3______________FDD--EQMRSKIQELERALLGDEDD-KMVGIDNLMEIDSEWSYQNESEQHQDSPKES------------SSADSNS--HVSSKEVVSQ----------------------ATPKQILISCARALSEGKLEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPPSDERLAAMQVLFEVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKAMPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAW

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
364	83		16		0.994512
469	50		50		1.0
646	50		50		1.0
664			20	80	0.995493
793		20	80		0.995493
904	90			10	0.90298
906	10			90	0.90298
907		10	90		0.90298
994	11		88		0.923564
995		11		88	0.923564
996	11	88			0.923564
998		88		11	0.923564
1000		12		87	0.992554
1009		11		88	0.923564
1012		12	87		0.992554
1016	87			12	0.992554
1018	87		12		0.992554
1019			12	87	0.992554
1023	87			12	0.992554
1025	12			87	0.992554
1028		12		87	0.992554
1029	12	87			0.992554
1140	28		71		1.0
1231	60		40		1.0
1253		50		50	1.0
1286	75			25	0.996473
1288		75		25	0.996473
1914	25		75		0.996473
2697	16			83	0.994512
2702			16	83	0.994512
3033		90		10	0.999898
3249	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain