SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7973

Length: 1562 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7973

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gb\|AAO42065.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50515.1\| unknown protein [Arabidopsis thaliana] gb\|AEC07265.1\| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thalia	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G22120.2	-	79%
RefSeq	Arabidopsis thaliana	NP_179802.2	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002307118.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKG1

Fln msg:

Fln protein: MADPSSSSSSPLIPPKQETGAAGGLLTMERDTIDLEAGPGDQIQCRICLETDGRDFIAPCKCKGTSKYVHRACLDHWRAVKEGFAFAHCTTCKAPYHLRVHAAADRKWRTLKFRFFVTRDILFIFAAVQLVIASLSYSVYLIDHHQQDWLRLAWGFESKIRFYYICGALLFFALLGLSGCFITCYDRRVRSDLAQPCRELCLCCCHPGVCADCHLPGTICMWTDCAACFESCAGTAGECGTCLGGAGEAGAPILVIVGLVTLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEVLDSDWSPPPLPTEHVQQLKSLGLL*

Protein Length: 336

Fln nts: ATGGGGAACTTCAACCGCTCAGAGAAGACGATAAATCTGGGAAATGTGGGCATTTTATCGCCCATGGCCTTGAATCGTATAATTCCAAAGGTCGAGATTTTTGGCATCGTGGCCGCTTTAAATATGTTGTGAACAGCGGATTGGAGAGGGTTCAAGTAAAATAAAAGAGGGTTCAATCTCAGGGCATTGACAGGAAGGAAGGAAGAAAGTA_-_ATGGCGGATCCATCGAGCAGTTCATCATCTCCCTTGATTCCTCCCAAACAGGAGACAGGAGCAGCGGGAGGGTTATTAACGATGGAACGAGACACGATTGATCTGGAGGCTGGACCCGGCGATCAAATCCAATGCAGAATTTGTCTCGAAACCGATGGCAGGGACTTCATTGCTCCTTGTAAATGTAAGGGAACTTCAAAATATGTGCACCGTGCATGCCTTGATCACTGGCGAGCTGTCAAGGAGGGATTTGCATTTGCTCACTGTACAACATGCAAGGCACCTTACCACCTTCGAGTGCATGCTGCGGCAGACAGGAAGTGGAGAACCTTGAAATTCCGATTCTTTGTAACAAGAGATATCCTTTTCATTTTTGCAGCTGTTCAGCTGGTGATTGCATCATTGTCATATTCAGTCTATCTGATAGATCACCACCAGCAAGATTGGCTGCGCCTGGCTTGGGGATTTGAGAGTAAAATTAGGTTCTACTACATATGTGGTGCACTATTATTTTTTGCATTGTTAGGACTCTCTGGTTGCTTCATAACCTGTTATGACCGACGTGTACGTAGTGATTTAGCACAGCCTTGTCGAGAACTGTGTCTTTGCTGCTGCCATCCAGGTGTGTGTGCAGATTGTCATTTACCAGGGACTATCTGTATGTGGACAGACTGCGCTGCTTGCTTTGAAAGTTGTGCTGGCACTGCAGGGGAATGTGGGACATGTTTGGGAGGGGCTGGTGAAGCAGGGGCACCAATATTGGTTATTGTAGGCCTTGTAACATTGGGGCTTTTTACTGTCATCGGTATCTTCTACAGTGTACTAGTAGCAACAATGGTTGGCCAAAGGATTTGGCAACGCCATTACCACATCTTAGCAAAAAGGATGCTGACAAAAGAATATGTTGTGGAAGATGTAGATGGCGAGGTACTAGATTCTGATTGGAGTCCACCTCCTCTTCCAACAGAACATGTTCAACAACTCAAGTCACTTGGATTGCTTTGA___TACATAATTGCAGTTTTGAACTATCAGAATACCTGATAGCTAGGGATCTCAGATTTGAGTATATCATGAGGAAAAGCATTTTATTGTTAGGTATCCTAATCCAAATCCCACTATGTTCAAAATGAGAGCAAAAGTTGGTACAGGGATTGGGTCAATGTATCTTAAAATCAAGGAAAGTTCCAGTTATCACTTGTAACTTATGCTTAAGGAGCTTAAAATGTGAATTTTAGAGTTTAGTGATGCTAATAAGTTTTCGAATTTGTAATATTGTGTTTCTTTCCTATATTGTATATTTGTGTGAAATAGTTTCAAAAGACTCAAAAAAATAGTTAAATTGACAAAAAAA

Fln Alignment:

Contig7973___MADPXXXXXXPLIPPKQETGAAGGLLTMERDTIDLEAGPGDQIQCRICLETDGRDFIAPCKCKGTSKYVHRACLDHWRAVKEGFAFAHCTTCKAPYHLRVHAAADRKWRTLKFRFFVTRDILFIFAAVQLVIASLSYSVYLIDHHQQDWLRLAWGFESKIRFYYICXXXXXXXXXXXSGCFITCYDRRVRSDLAQPCRELCLCCCHPGVCADCHLPGTICMWTDCAACFESCAGTAGECGTCLGGAGEAGAPXXXXXXXXXXXXXXXXXIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEVLDSDWSPPPLPTEHVQQLKSLGLL
A9NKG1______________MADPSSSSSSPLIPPTQEAVAAGGLLTMERDTIDLEAGPGDQIQCRICLETDGRDFIAPCKCKGTSKYVHRACLDHWRAVKEGFAFAHCTTCKAPYHLRVHAAADRKWRTLKFRFFVTRDILFIFAAVQLVIASLSYSVYLIDHHQQDWLRLAWGFESKIRFYYICGALLFFALLGLSGCFITCYDRRVRSDLAQPCRELCLCCCHPGVCADCHLPGTICMWTDCAACFESCAGTAGECGTCLGGAGEAGAPILVIVGLVTLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDDEILDSDWNPPPLPTEHVQQLKSLGLL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
767	14			85	0.993533
768		14	85		0.993533
770		85		14	0.993533
771		85		14	0.993533
800		16		83	0.994512
905		20		80	0.995493
921			83	16	0.994512
938	20			80	0.995493
940			20	80	0.995493
1114	90		10		0.90298
1238		90	10		0.90298
1263	90		10		0.90298
1369			47	47	1.0
1472		81		18	0.999994
1507	90		10		0.90298
1536	16	83			0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
192	205	AGGA AGGA AGGA AG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain