SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7969

Length: 1993 nt

UniGene Fasta

>sp_v3.0_unigene7969
CAATCTTGACCTCTTTCCCCTGCAAACTCAAGAGCTTCTGTGTTGCTCATGATGACATCCCAACAAAGGACCAAAAGTCCAAGGAAGGGGAGAAAGATGAGGGGTCATTTGATCACAGCAGCAAAGGAGGATGGAAAACCATGCCTTTTATCATAGGAAACGAGGCCTGTGAGAAATTGGCAACTATAGGTTTGCTTGCAAACATGATCGTCTACCTGACAAAAGAATTCAACATGCCAAATGTGACCGCTTCATACATCCTTAACCTGTGGACGGGAACGACAAACCTTTCCCCGCTGCTAGGAGCGTTTCTCTCAGATTCTTATATTGGCAGATACTGGACCATTGCTCTTGGCTGCATTGCATCTCTTATTGGAATGGCTCTTCTTTCTCTTACAGCGATATTTCCACAGTTCAGACCACCTCCATGCAACACTAATACAGGGACCCCGTGCAGGCTTGCATCAGGAGGTCAAAATGCTTTACTCTATTCCTCATTCATAATGATGACCATAGGTGCAGGTGGTATCAGACCATGTTCGGTAGCTTTTGGAGACAGATCAATTCGATTACACAAGCGAAAAGGGGAAGAGAAGTATACAGAGCTTCTTCAATTGGTACTACTTTTCATTCACCATAGCGATGATGGTGGCGCTGACGATCATAGTATACATTCAAGATGATGTAAGCTGGAGTTGGGGTTTGTGTATCCCCACCAGTCTGATGTTTCTTTCTGTCACGAGCTTCCTTGTGGGGGCAAATCTCTACAATTGTGTTACGCCAGAGGGAAGTTCATTCACTAGCTTTGCACAAGTTCTGGTTGCTGCACGAAGAAAATGTCATCTTTCGTTGCCTTCTCAGACATCGGACTACTATGATCCTCCACAACAGGGAGTTCTCAAATCGAGGATGGATCTTACAGACCAATTCATGTTTCTGAACAAGGCTTGTATAAAAAGCCAAGAAGATTTTAAAGAAGATGAATCTGTGGCCAATCCATGGAGACTGTGCAGTCTTCAGCAAGTGGAAGAGCTGAAATCTGTGATAAGAATAGTGCCCATATGGTCAGGCACCATCAGCCTATTTGTGTGTATGGCACAGCTAAACACATTCTCTGTTCTGCAGGCAGAAACAATGGACAGACACCTGGGCAAGCACTTCCAGATCCCCGCTGGCTCATTTGGAATCTTCACGATGCTCGCGCTCACATTATTTTTGCCATTTTATGACAAATTCATCGTTCCATTCTCCAGGCGCGTGACGAAGGAAGGAAAAGGCATAACGCTTTTACAGAGAGTCGGTGTCGGGTTGGCCCTCGCTATCTTATCTATGGCCTTCGCGGCAGCTGTGGAAACTAAGCGGCGGACCGTGGCGTTAAGCCACGATTTCATGGAGAAACCGAAGGGCGCGATTCACATGTCAGCACTGTGGCTGATTCCTCAGTATTCTCTTGCCGGCGTGGCAGAGGCATTCAGTGCAATCGGAGAGATCGAATTTCTGTACAGTCAATTCCCCGAAAACATGAGGAGTGTTGCGGGTGCGCTCTTCTTCTTGTCCCTGGGTCTGGGCAATTATCTAAGCAGCCTCGTCGTCAGCATTGTGCATAAAACCACAGGCGGCCGCGGTCACGAGAACTGGCTGGCGCAGAATCTGAACAAGGGCAAGCTCGATAACTTTTATTGGCTACTAGCCGGATATAGCGCTGTCAACTTGATGTATTTTGTCATCTGTGCGCGCTGGTACAGATATAAAGCTACCGTCCACCGCCAAACTGCCCAGACCTCCCTCGGTGAGCAAGATAATCCGACATTACCTCATGCATAGCACCATATATATATTCATTCTAAATTGCAGTCAGCGGTAAGCCAGTCTTATTATTCATTGTTATTTTTGAAATTTTGGTGTTTGGAATAGATTTCCAAAACATTTCACTCCTGTGATAATGACATTGTATATAATATATTAATATTAATGACATTGCATATGATATACT

Ace file of the UniGene sp_v3.0_unigene7969

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00854, PTR2, POT family	-	-	0.0	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Nitrate transporter, putative	-	-	1.371e-40	-

Source	Gene names
Sma3	AT5G62680; At1g18880; At1g62200; At1g68570; At1g69860; At1g69870; At2g02040; At3g16180; At3g47960; At3g54140; At5g01180; At5g62680; F14H20.11; F19K23.13; F24B22.100; F24J5.19; F6A14.2; F7J8_160; GSVIVT00000074001; GSVIVT00000075001; GSVIVT00000076001; GSV

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Sodium:dicarboxylate symporter, conserved site	IPR018107	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G69870.1	NRT1.7 nitrate transporter 1.7 chr1:26316208-26320097 FORWARD LENGTH=620	49%
RefSeq	Arabidopsis thaliana	NP_564979.1	nitrate transporter 1.7 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002317995.1	predicted protein, partial [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQS8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 394 aas, putative chimeric sequence, your sequence is shorter than subject: 227 - 649

Fln protein: ILTSFPCKLKSFCVAHDDIPTKDQKSKEGEKDEGSFDHSSKGGWKTMPFIIGNEACEKLATIGLLANMIVYLTKEFNMPNVTASYILNLWTGTTNLSPLLGAFLSDSYIGRYWTIALGCIASLIGMALLSLTAIFPQFRPPPCNTNTGTPCRLASGGQNALLYSSFIMMTIGAGGIRPCSVAFGDRSIRLHKRKGEEKYTELLQLVLLFIHHSDDGGADDHSIHSR*

Protein Length: 228

Fln nts: CAATCTTGACCTCTTTCCCCTGCAAACTCAAGAGCTTCTGTGTTGCTCATGATGACATCCCAACAAAGGACCAAAAGTCCAAGGAAGGGGAGAAAGATGAGGGGTCATTTGATCACAGCAGCAAAGGAGGATGGAAAACCATGCCTTTTATCATAGGAAACGAGGCCTGTGAGAAATTGGCAACTATAGGTTTGCTTGCAAACATGATCGTCTACCTGACAAAAGAATTCAACATGCCAAATGTGACCGCTTCATACATCCTTAACCTGTGGACGGGAACGACAAACCTTTCCCCGCTGCTAGGAGCGTTTCTCTCAGATTCTTATATTGGCAGATACTGGACCATTGCTCTTGGCTGCATTGCATCTCTTATTGGAATGGCTCTTCTTTCTCTTACAGCGATATTTCCACAGTTCAGACCACCTCCATGCAACACTAATACAGGGACCCCGTGCAGGCTTGCATCAGGAGGTCAAAATGCTTTACTCTATTCCTCATTCATAATGATGACCATAGGTGCAGGTGGTATCAGACCATGTTCGGTAGCTTTTGGAGACAGATCAATTCGATTACACAAGCGAAAAGGGGAAGAGAAGTATACAGAGCTTCTTCAATTGGTACTACTTTTCATTCACCATAGCGATGATGGTGGCGCTGACGATCATAGTATACATTCAAGATGA___TGTAAGCTGGAGTTGGGGTTTGTGTATCCCCACCAGTCTGATGTTTCTTTCTGTCACGAGCTTCCTTGTGGGGGCAAATCTCTACAATTGTGTTACGCCAGAGGGAAGTTCATTCACTAGCTTTGCACAAGTTCTGGTTGCTGCACGAAGAAAATGTCATCTTTCGTTGCCTTCTCAGACATCGGACTACTATGATCCTCCACAACAGGGAGTTCTCAAATCGAGGATGGATCTTACAGACCAATTCATGTTTCTGAACAAGGCTTGTATAAAAAGCCAAGAAGATTTTAAAGAAGATGAATCTGTGGCCAATCCATGGAGACTGTGCAGTCTTCAGCAAGTGGAAGAGCTGAAATCTGTGATAAGAATAGTGCCCATATGGTCAGGCACCATCAGCCTATTTGTGTGTATGGCACAGCTAAACACATTCTCTGTTCTGCAGGCAGAAACAATGGACAGACACCTGGGCAAGCACTTCCAGATCCCCGCTGGCTCATTTGGAATCTTCACGATGCTCGCGCTCACATTATTTTTGCCATTTTATGACAAATTCATCGTTCCATTCTCCAGGCGCGTGACGAAGGAAGGAAAAGGCATAACGCTTTTACAGAGAGTCGGTGTCGGGTTGGCCCTCGCTATCTTATCTATGGCCTTCGCGGCAGCTGTGGAAACTAAGCGGCGGACCGTGGCGTTAAGCCACGATTTCATGGAGAAACCGAAGGGCGCGATTCACATGTCAGCACTGTGGCTGATTCCTCAGTATTCTCTTGCCGGCGTGGCAGAGGCATTCAGTGCAATCGGAGAGATCGAATTTCTGTACAGTCAATTCCCCGAAAACATGAGGAGTGTTGCGGGTGCGCTCTTCTTCTTGTCCCTGGGTCTGGGCAATTATCTAAGCAGCCTCGTCGTCAGCATTGTGCATAAAACCACAGGCGGCCGCGGTCACGAGAACTGGCTGGCGCAGAATCTGAACAAGGGCAAGCTCGATAACTTTTATTGGCTACTAGCCGGATATAGCGCTGTCAACTTGATGTATTTTGTCATCTGTGCGCGCTGGTACAGATATAAAGCTACCGTCCACCGCCAAACTGCCCAGACCTCCCTCGGTGAGCAAGATAATCCGACATTACCTCATGCATAGCACCATATATATATTCATTCTAAATTGCAGTCAGCGGTAAGCCAGTCTTATTATTCATTGTTATTTTTGAAATTTTGGTGTTTGGAATAGATTTCCAAAACATTTCACTCCTGTGATAATGACATTGTATATAATATATTAATATTAATGACATTGCATATGATATACT

Fln Alignment:

Contig7969___SFPCKLKSFCVAHDDIPTKDQKSKEGEKD-EGSFDHSSK-----GGWKTMPFIIGNEACEKLATIGLLANMIVYLTKEFNMPNVTASYILNLWTGTTNLSPLLGAFLSDSYIGRYWTIALGCIASLIGMALLSLTAIFPQFRXXXXXXXXXXXXRLASGGQNALLYSSFIMMTIGAGGIRPCSVAFG
C0PQS8______________SFMC-----CSAGETVQQSNEEKSVGNNNIESGVGHYSPTNRKLGGWRTMPFIFANELCEKLAVVGFSTNMITYLQEELHLPPVTAANTLTNFGGTASLTPLLGAFIADSYVGRFWTIAVSSLIYQIGMVILTISAILPNLR--PPPCSGKEVCKQASAGQLGILYFSLLLTALGSGGIRPCVVAFG

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
329	83			16	0.994512
330			16	83	0.994512
331			16	83	0.994512
559	20		80		0.995493
561		80		20	0.995493
562	25		25		0.995533
563	25			25	0.995533
815	25		75		0.996473
818		75		25	0.996473
819	75			25	0.996473
991	66		33		1.0
1040	14		85		0.993533
1049			14	85	0.993533
1062		14	85		0.993533
1100			14	85	0.993533
1104	14		85		0.993533
1105		85		14	0.993533
1107		85		14	0.993533
1108	85			14	0.993533
1123	16	83			0.994512
1124		16		83	0.994512
1125	16		83		0.994512
1133	20		80		0.995493
1142	80		20		0.995493
1155		80		20	0.995493
1157			80	20	0.995493
1160		80	20		0.995493
1279			66	33	0.997452
1280			66	33	0.997452
1436	16		83		0.994512
1437		83		16	0.994512
1438	83		16		0.994512
1439		83	16		0.994512
1440			16	83	0.994512
1676	85		14		0.993533
1705		16	83		0.994512
1727	83			16	0.994512
1790	40	60			1.0
1802	20		80		0.995493
1823		20		60	0.99255
1871	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain