SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7956

Length: 1950 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene7956
ACGTGGGAATGGGATAATGGAGAGAATCTCATGCTCTTTCCAGGCAATGGCAATGGTAGCCGCAAGGCCACTGTTAACTCTAAGCTGAAGGATGAGCCGAAGCTGCACGACGCCGCTGCCGGTTTCCTCCGGGTTCAATCCGTTAGTGAAGACGGTAACTCTTCCCCCGGGGAGATTCGAACCTCCGATGCCAGTACTCCCGATGATCAGCAACATCATAGCGGCGTTGTCACAGTGGCGGTTCCGGCCGGGTCGGGGGATTCGGGGGCGATTGGGTTAAAGCTGGGCAAGCGGACCTATTTTGAGGCGGTGAAGGCAATTCCCGGACCGGCCCCCTCGCCGTCTTCTTGCAGTCCGGCTGCCAAGAAGCAACGGTCGGCGATGCAGGGGACGCATATGGTGCCTCGCTGCCAGGTGGAGGGCTGCAAGACGGAGCTCACCGCTGCCAAGGACTACCACCGCCGCCACAAAGTCTGCGAGCTCCACTCCAAGTCCCCCAAGGTCATTGTCAACGGGATTGAGCAGCGATTCTGCCAGCAATGTAGCAGGTTTCATATTTTATCTGAGTTTGATGAAGGGAAGCGGAGCTGTCGGAGACGTTTAGCTGGCCACAATGAGCGGCGTAGGAAGCCCCAACCTGACTCACTGGCAATAAACCCTGCAAGATTTGCTTCCGCGTTCTATGATGACAGGCGACTTAACAGCATTTTGATGGATAGATCACCATTCATGCACCAACGCATAACTTCAAATTCAATTCTGGAGGATTCCATTGATTTCAAACTTGGTGGATATGGAAAAGGAGCTTGGCCAAGGGTGAAGGCAGAAGATGAATCATCATATGATGGGCAAGTATCAGCAGGTACCGTATCGCGTCACAATGCTGACAGGTTGCTTTTCCTTTTACAGAGTTCTAAGAATGTACCTGGTGGTCCTATTAGTCAAGACGTTCACCAGTACATGCAAAGCTCCGGGGCTCATGCAGGACAGGCCTTGACTTTGTCATCATCCTCGGGAGAAAATCTCGCAGGTTTAGACGTTGTATCTGCTACGCATGGTTTATCAGGAGTCTCGGACTCTGGGTGTGCTCTCTCTCTTCTGTCATTTCAATCCGGGGGCTCAAGGGCCTCAGGATCAGCTTCATTCGATATGACCACACGGTCAGGTCTTACCATGGATCAGCTTATACAAGGGGATCAACCTCTTATGGCCCAACCACTGATGCAAGGAGTACAACACAATTTTGGTCTTTTTGGAGCAGACAAATTACTAACAGTTTGCTCTCAATCCTCTACTAATCTTGCAACAGGTGGGTTCCCTGCCACTGTTGTCAATTCTATGGATAAACAACACCAAGGTGAGCCACTTGTTTCCAATGCTGGTGGCATTGGAAACTTTGGAGGACATGTATTTGGCTTGCTGCAGGGGAGCAATTTCAGAGCGTCTCAGGCTGCAAGCTCACAAGATATCCAAGGCACCATAGGATTTGATGCGCAGGTCCTCAGAAACACAAAACGATTCTCATGATCAACATGGTATGGTGCACCAGGGAAGTAGACATTTTACTGACGCGCAGTTGTTGAGGTCTTTTGAATCATCTATTTACGACACTCATCAACTGCTGTAGCTCTGATCTGTTTGGTCATATGGCAGTATTTTCTTGCCGTCGGACTTGAAGCTAACTGTTAAAACTTCATTATGACAATTATCTATATTCCCTAGTTGCAAACAATTACTTTCAAGTTGCAGTTACTCTTGCTTAATTTGCTTGTTACCATGTGTGGTCCTGTTTGTTGTCTTTATCTAGAGTACAATATCATATTCTAATGGGTTTTGCTAATTTAGATCAATATGGGTAACATCATCTATGCTCATGGCATCAATTTAATGATTACATTGGATAGCCGGAACTCAGGAATGGGTTTATAAGGCGTCCCTCTATTTCTGTTG

Ace file of the UniGene sp_v3.0_unigene7956 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=2 Tax=Physcomitrella patens RepID=A9TAE9_PHYPA	-	-	0.0	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Squamosa promoter-binding protein, putative	-	-	1.922e-12	-

Source	Gene names
Sma3	At1g02065; At1g20980; At1g27370; At1g53160; At1g69170; At1g76580; At2g33810; At2g42200; At2g47070/At2g47080; At3g15270; At3g57920; At3g60030; At5g43270; B1455F06.12; BoB028L01.130; CHLREDRAFT_101247; CHLREDRAFT_115124; F12M16.2; F14G6.18; F14M4.9/F14M4.10

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	megasporogenesis	GO:0009554	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3	inflorescence development	GO:0010229	Biological Process	-
Sma3	regulation of vegetative phase change	GO:0010321	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Transcription factor, SBP-box	IPR004333	-	-
Sma3	Zinc ribbon, NADH pyrophosphatase	IPR015376	-	-
Sma3	Squamosa promoter-binding protein	IPR017238	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB60

Fln msg: Separated hits, possible frame ERROR between 1482 and 1484, your sequence is longer than subject: 533 - 160

Fln protein: MLFPGNGNGSRKATVNSKLKDEPKLHDAAAGFLRVQSVSEDGNSSPGEIRTSDASTPDDQQHHSGVVTVAVPAGSGDSGAIGLKLGKRTYFEAVKAIPGPAPSPSSCSPAAKKQRSAMQGTHMVPRCQVEGCKTELTAAKDYHRRHKVCELHSKSPKVIVNGIEQRFCQQCSRFHILSEFDEGKRSCRRRLAGHNERRRKPQPDSLAINPARFASAFYDDRRLNSILMDRSPFMHQRITSNSILEDSIDFKLGGYGKGAWPRVKAEDESSYDGQVSAGTVSRHNADRLLFLLQSSKNVPGGPISQDVHQYMQSSGAHAGQALTLSSSSGENLAGLDVVSATHGLSGVSDSGCALSLLSFQSGGSRASGSASFDMTTRSGLTMDQLIQGDQPLMAQPLMQGVQHNFGLFGADKLLTVCSQSSTNLATGGFPATVVNSMDKQHQGEPLVSNAGGIGNFGGHVFGLLQGSNFRASQAASSQDIQGTxxDLMRRSSETQNDSHDQHGMVHQGSRHFTDAQLLRSFESSIYDTHQLL*

Protein Length: 534

Fln nts: ACGTGGGAATGGGATAATGGAGAGAATCTC_-_ATGCTCTTTCCAGGCAATGGCAATGGTAGCCGCAAGGCCACTGTTAACTCTAAGCTGAAGGATGAGCCGAAGCTGCACGACGCCGCTGCCGGTTTCCTCCGGGTTCAATCCGTTAGTGAAGACGGTAACTCTTCCCCCGGGGAGATTCGAACCTCCGATGCCAGTACTCCCGATGATCAGCAACATCATAGCGGCGTTGTCACAGTGGCGGTTCCGGCCGGGTCGGGGGATTCGGGGGCGATTGGGTTAAAGCTGGGCAAGCGGACCTATTTTGAGGCGGTGAAGGCAATTCCCGGACCGGCCCCCTCGCCGTCTTCTTGCAGTCCGGCTGCCAAGAAGCAACGGTCGGCGATGCAGGGGACGCATATGGTGCCTCGCTGCCAGGTGGAGGGCTGCAAGACGGAGCTCACCGCTGCCAAGGACTACCACCGCCGCCACAAAGTCTGCGAGCTCCACTCCAAGTCCCCCAAGGTCATTGTCAACGGGATTGAGCAGCGATTCTGCCAGCAATGTAGCAGGTTTCATATTTTATCTGAGTTTGATGAAGGGAAGCGGAGCTGTCGGAGACGTTTAGCTGGCCACAATGAGCGGCGTAGGAAGCCCCAACCTGACTCACTGGCAATAAACCCTGCAAGATTTGCTTCCGCGTTCTATGATGACAGGCGACTTAACAGCATTTTGATGGATAGATCACCATTCATGCACCAACGCATAACTTCAAATTCAATTCTGGAGGATTCCATTGATTTCAAACTTGGTGGATATGGAAAAGGAGCTTGGCCAAGGGTGAAGGCAGAAGATGAATCATCATATGATGGGCAAGTATCAGCAGGTACCGTATCGCGTCACAATGCTGACAGGTTGCTTTTCCTTTTACAGAGTTCTAAGAATGTACCTGGTGGTCCTATTAGTCAAGACGTTCACCAGTACATGCAAAGCTCCGGGGCTCATGCAGGACAGGCCTTGACTTTGTCATCATCCTCGGGAGAAAATCTCGCAGGTTTAGACGTTGTATCTGCTACGCATGGTTTATCAGGAGTCTCGGACTCTGGGTGTGCTCTCTCTCTTCTGTCATTTCAATCCGGGGGCTCAAGGGCCTCAGGATCAGCTTCATTCGATATGACCACACGGTCAGGTCTTACCATGGATCAGCTTATACAAGGGGATCAACCTCTTATGGCCCAACCACTGATGCAAGGAGTACAACACAATTTTGGTCTTTTTGGAGCAGACAAATTACTAACAGTTTGCTCTCAATCCTCTACTAATCTTGCAACAGGTGGGTTCCCTGCCACTGTTGTCAATTCTATGGATAAACAACACCAAGGTGAGCCACTTGTTTCCAATGCTGGTGGCATTGGAAACTTTGGAGGACATGTATTTGGCTTGCTGCAGGGGAGCAATTTCAGAGCGTCTCAGGCTGCAAGCTCACAAGATATCCAAGGCACCATxxxGGATTTGATGCGCAGGTCCTCAGAAACACAAAACGATTCTCATGATCAACATGGTATGGTGCACCAGGGAAGTAGACATTTTACTGACGCGCAGTTGTTGAGGTCTTTTGAATCATCTATTTACGACACTCATCAACTGCTGTAG___CTCTGATCTGTTTGGTCATATGGCAGTATTTTCTTGCCGTCGGACTTGAAGCTAACTGTTAAAACTTCATTATGACAATTATCTATATTCCCTAGTTGCAAACAATTACTTTCAAGTTGCAGTTACTCTTGCTTAATTTGCTTGTTACCATGTGTGGTCCTGTTTGTTGTCTTTATCTAGAGTACAATATCATATTCTAATGGGTTTTGCTAATTTAGATCAATATGGGTAACATCATCTATGCTCATGGCATCAATTTAATGATTACATTGGATAGCCGGAACTCAGGAATGGGTTTATAAGGCGTCCCTCTATTTCTGTTG

Fln Alignment:

Contig7956___MTTRSGLTMDQLIQGDQPLMAQP-LMQGVQHNFGLFGADKLLTVCSQSSTNLATGGFPATVVNSMDKQHQGEPLVSNAXXXXXXXXXXXGLLQGSNFRASQAASSQDIQGTIxDLMRRSSETQ-NDSHDQHGMVHQGSRHFTDAQLLRSFESSIYDTHQLL
D5AB60______________MTRRSDLTVDQLILENQPLMAQPPLMQGVQHNFGLFAADKLLTICSQSSTNLATGGFPATVVDSMDKQHQGESLVSNADGIGNFGGYTFGLPQGSSFRGSQAASSQDIQGTIxDLMCRSSETQTNDSHDQPGMVHQGSRQFTDVQLLRSFESSLYDTHQLL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1560		66		33	1.0
1582		12		87	0.992554
1583		12	87		0.992554
1585	12			87	0.992554
1658	33			66	0.997452
1662	33	66			0.997452
1785	25		75		0.996473
1786	25		75		0.996473
1787		25	75		0.996473
1788		25	75		0.996473
1791	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain