SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7953

Length: 1868 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7953

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9S5C5_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30020.1	Protein phosphatase 2C family protein chr2:12814437-12815904 FORWARD LENGTH=396	59%
RefSeq	Arabidopsis thaliana	NP_180563.1	putative protein phosphatase 2C 25 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002313987.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKN4

Fln msg:

Fln protein: MSCITVAEPLGWLNKNTSSTQGHHHHHHHQIVNMACIVAGNSPSVLGSCRSPSLHDSEIEICAGSPRNHGFQTPRSGGIQTSFAGSRLRPVLAIRDENLLRNDGGKSPVKKVQQRAVSLCVGVPEEKSAENDLVSGCKGPSPPLKRKRPPRLDIPLQLPGVEAQYAAAVEQPMEINEEGFHYAVSCKKGRREFMEDTHKAILNVLGDSKQAFFGVFDGHSGRAAADFAAENLGQNIVDAVVSMGDEKEDNVEQAARAGYLTTDAEFLKQEVGSGTACVTALIIDGNLVVSNAGDCRAVLSRDGVSEALTCDHRAGREDERQRIEDLGGIVDLRHGVWRVQGSLAVSRAIGDSHMKEWITAEPDSRKIEVTSDCEFLILASDGLWDKVSNQEAVEIARPFCIDRQPNLKPVGAGPIDACKKLVELAVTRKSQDDVSVMIIQLRHFCKKED*

Protein Length: 451

Fln nts: ATGGGAATAACGTCTTCTTTAAATGCTCTGCGTAGACTGCCTAGGAATCCATAACGTCTAGCATGTTTTCAATTGGATTGAAAGAACAGAGGAGGAAAAGAGGGGATTTATAATAGTACTTCATAGAACCCA_-_ATGTCTTGCATCACTGTTGCAGAGCCCCTGGGATGGCTCAACAAGAACACAAGTAGCACACAGGGTCACCATCACCACCATCATCACCAGATTGTGAATATGGCTTGCATTGTAGCAGGGAATTCTCCCTCTGTTTTGGGCTCTTGCAGGTCCCCGTCCTTACATGATTCTGAGATTGAAATCTGTGCAGGTTCCCCTCGGAATCATGGCTTTCAGACGCCCAGGAGTGGGGGTATTCAGACCAGTTTTGCGGGGTCTCGGCTTCGGCCTGTGTTGGCAATCAGAGATGAGAATCTTCTGCGGAACGATGGGGGCAAAAGCCCAGTGAAAAAAGTGCAGCAGAGGGCCGTGTCTCTGTGTGTCGGCGTCCCAGAGGAGAAGAGCGCGGAGAATGATTTGGTTTCTGGCTGCAAGGGCCCCTCGCCGCCGCTCAAGAGGAAACGCCCGCCGAGGCTGGATATTCCTCTCCAGCTGCCCGGTGTAGAGGCGCAGTATGCAGCGGCCGTGGAGCAGCCAATGGAGATCAATGAAGAGGGTTTTCACTACGCGGTTTCGTGCAAAAAGGGCCGGCGAGAATTCATGGAGGATACCCACAAGGCCATTCTCAATGTTCTCGGCGATTCCAAACAGGCCTTCTTTGGTGTCTTCGATGGTCATAGTGGTCGTGCGGCTGCAGATTTCGCTGCAGAAAATCTCGGGCAGAATATTGTGGATGCTGTGGTCAGCATGGGAGATGAAAAAGAGGACAATGTTGAGCAGGCTGCTAGAGCAGGATACTTAACAACAGATGCAGAGTTTTTAAAGCAGGAAGTTGGCAGCGGTACTGCTTGCGTTACTGCTCTGATTATAGATGGTAACTTGGTGGTTTCCAATGCGGGGGATTGTCGAGCAGTTCTTAGCAGAGATGGTGTTTCTGAAGCCCTTACCTGTGATCATCGAGCTGGAAGGGAGGATGAGCGACAACGGATAGAGGATTTGGGTGGAATTGTGGATCTCCGCCATGGAGTTTGGCGAGTTCAAGGATCTCTAGCTGTATCTAGGGCAATAGGCGATTCACACATGAAAGAATGGATAACAGCTGAACCTGACTCCAGAAAGATTGAAGTTACATCTGATTGTGAGTTTTTAATTTTGGCATCAGATGGTCTGTGGGATAAAGTCAGTAATCAAGAAGCAGTGGAAATTGCCAGGCCTTTCTGCATCGATAGGCAGCCTAATTTGAAACCAGTAGGAGCTGGCCCTATAGATGCTTGCAAAAAGCTTGTAGAGCTTGCTGTAACCAGAAAATCTCAAGATGATGTCAGTGTGATGATAATACAACTCAGACATTTTTGCAAGAAAGAGGATTAG___ACTGGATGTGCTGAGGGAGGGATGTCATTAAAAGAGTCCTTCACTAACAACCATCTGACCTAGTTTTTTTGCAAGAAAGAGGATTAGACTGGATGTGCTGAGGGAGGGATGTCATTAAAAGAGTCCTTCACTAACAACCATCTGACCTAGTTCTGGGTGTTGGCGTTGATCCCACACCCTATATAGGATCCTGATCATTAAGTAGCAAGAAACATGACTCTTCCATTGTTTTATGTAAAATGGGAGACACCTACATTCATTTTTGTACAGTATCACAAATCAATAGGTCCAATGATTCTTTTCCACAATTATTCTTTCATTCAATTCCAATGATCGTGTTAAATTTTTGATAGAAGTGCCATAAGAATTGGCACTGTATTTGATAT

Fln Alignment:

Contig7953___MSCITVAEPLGWLNKNTSSTQGXXXXXXXQIVNMACIVAGNSPSVLGSCRSPSLHDSEIEICAGSPRNHGFQTPRSGGIQTSFAGSRLRPVLAIRDENLLRNDGGKSPVKKVQQRAVSLCVGVPEEKSAENDLVSGCXXXXXXXXXXXXXXXXXXXQLPGVEAQYAAAVEQPMEINEEGFHYAVSCKKGRREFMEDTHKAILNVLGDSKQAFFGVFDGHSGRAAADFAAENLGQNIVDAVVSMGDEKEDNVEQAARAGYLTTDAEFLKQEVGSGTACVTALIIDGNLVVSNAGDCRAVLSRDGVSEALTCDHRAGREDERQRIEDLGGIVDLRHGVWRVQGSLAVSRAIGDSHMKEWITAEPDSRKIEVTSDCEFLILASDGLWDKVSNQEAVEIARPFCIDRQPNLKPVGAGPIDACKKLVELAVTRKSQDDVSVMIIQLRHFCKKED
B8LKN4______________MSCITVAEPLRWLNKNTNSTQSHHHHHQLQLVNMACIVAGNSPSVLSSCRSPSLHDSEIEICAGSPRNHGFQTPRSGGIQSSFVGSRLRPVLAIRDENLLWSEGGKSPVKKLQQRAVALCVNIPEEKSPDNDSISGCKGPSPPLKRKRPPRLDIPLQLPGLEAQYAAAVEQPMEVNEEGFHYAVSCKKGRREFMEDTHKAMVNVLGDSKQAFFGVFDGHSGRMAADFAAENMGQNIVDAMLSMGDEKEDIVEQAVRAGYLTTDAEFLKQEVGSGTACVTALIIDGNLVVSNAGDCRAVISRDGASEALTCDHRAGREDERQRIENLGGIVDLRHGVWRVQGSLAVSRAIGDSHMKEWIIAEPDTRKIEITSDCEFLILASDGLWDKVSNQEAVDIARPFCVEKQPNLKPLQGGPIDACKKLVELAVTRKSQDDVSVMIVQLGHFCMKKN

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
562		80		20	0.995493
745	16	83			0.994512
747		83	16		0.994512
972		12		87	0.992554
990		88	11		0.923564
1078	88			11	0.923564
1143			72	27	1.0
1185		11		88	0.923564
1203	20		80		0.995493
1209	83	16			0.994512
1212		16		83	0.994512
1252	20		80		0.995493
1255	25			75	0.996473
1256			25	75	0.996473
1412		85	14		1.0
1548		33		66	0.997452
1550			33	66	0.997452
1551			33	66	0.997452
1554		66		33	0.997452
1555	66		33		0.997452
1556	66			33	0.997452
1557			66	33	0.997452
1558	66		33		0.997452
1559	66		33		0.997452
1560	66	33			0.997452
1562	66			33	0.997452
1563			66	33	0.997452
1784	10			90	0.90298
1809		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain