SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7900

Length: 2531 nt

UniGene Fasta

>sp_v3.0_unigene7900
TGAGCTTAGAGGAAGATATATTATGTGCCTTGAAAGATATACAACATCTCTGTCGCAAAAGTAGAATCAACAAATATCGGGTACGTAATGCTGGGTTGATACCTATGATTGTTGAGCGGTTGAAAACTGGTGTTGAGCAAGTGCGCTGTCGAGCTCTTGAAACTCTTTGTGTACTAGTAGAAGATGATGAAGACAATAAGGAAGCTATTGCTGAAGCAGATTACATCCGTACCTATGTTAAATGTTTATCACGGGAGCTTTCTCAGGAAAGGGAGGAAGCAGTATCTTTGTTATTGGAGCTTTCCAAATCCCAGTCTTTATCTGAAAAGATAGGTTCTGCAAATGGTGCTATTCTTATATTAGTTGGAATGACTAGCAGCAAATCTGAAAATAATGTGGCTGTTAAGAATGCTGAAAAAACCCTTGAGAATTTGGAATTGTGTGACAAGAATGTTCGTCAAATGGCTGAAAATGGTCGTTTGCAACCCCTTATTAAACGCCTTGTAGAAGGCTCAGAAGAGACACAGCTGGAGATGACAAACTACCTTGCTGAGGTGGTCCTTAGTAATGATGGAAAGGCGCTTGTAGCAGAAAAGGCTGCTCCAACACTGGTGAATATACTGGGAAGTGGCAGTTTGCCAGCAAGGGAAGCTAGCTTGAGGGCTTTAAATCAGATTTCTTCATATGATGCGAATGGGAAAATACTGATTGAGGCTGGTATTCTTCCTCCTCTTATCAAGGATCTCTTTACTGTGGGTGTAAATCATTTACCGATTAAGCTAAAGGAGGTCTTAGCTACGACTCTAGCAAATGTTGTAAACTCTGGATCTGAATTTGAATCAGCTCCAATTGATGCTGATGGCAATACTCTACTTTCAGAAAGTATCATTCATAATTTATTGCATTTGATTAGCAATACAGGGCCTGCGATAGAAGCAAAGCTACTTCAAGTGCTCGTGGGCCTAGCAAGCTCTTCACAAGCTGTTCTCAATGTTGTAACTGCCATTAAAAGTGCTGGAGCTACTGTTAGCCTCCTTCAGTTCATTGATGCACCGCAAAGGGATGTTCGTATTGCATCTGTGAAGCTGCTTCAACGGCTCTGTCCTCATATGGGCCAGGAACTTGCAGATGGGTTGCGAGTAAGTACTGGCCAGCTTGGTACTTTAATAATGATAATGGGAGCAAATGGTTTAACAGAGGAACATGCAGCTGCTGCATGCCTGGTGGCAAATCTCCCAGAAAGGGATGCTATTCTGACTCGTTCACTTCTTGATCAAGGTGCATTTCCAGTAGTAGTGGGTAAAATTGATGAGATACAGCATGGTGAAACAAGAGGCAGCCGCTTTCGCACACCTTACTTGGAGGGATTAGTAGGCATCTTAGCAAGATTTACATTTTTGCTTGATGATGTAGCAGTTCTTGCTCTTGCTAAGCAGTATAATCTGGCGTCTTTATTTACAGATTTACTTCAAACAAATGGTTTTGATGAAGTACAAAGATTGTCAGCAGTTGCACTGGAAAATCTATCTACATACTCGAAAACACTTTCAATAATTCCGGAGGTTTCCAAAGGTGGTCTTTGTGCAAATTTGTTTGGGTGCCTATTCTCACCTTCTAAGCCAACTGGTCTTTGTCCAGTTCATCATGGGATTTGCTCGTCCAAAAATACCTTTTGCCTTTTGGAAGCAAAAACAGTAACTAAGTTGGTTGCATGCCTAGATCACGAAAATGTACTGGTGGTTGAATCATCTCTTGCAGCAATATGTACTCTTGTCAATGATTCGGTTGATGTGGAACGTGGGGTTTTTATTTTGGATAAAGCGGATGCTATACAGCATATCCTAGATATTCTACAAGAAAACAAAACAGAAGTGCTCCGTCAGCGGGCAGTATGGTTAGTGGAAAGAATATTACGAATTGATGATCTTGCCCGTGCTATTTCTGCCGATCCTAAAACAAATACAGCATTAGTTGATGCCTTTCGTCATGGTAACTATAATACTCGGCAAGTTGCAGAACAGGCTTTGAAACATCTGAATAAAATTCCAAATTTCTCTGGGGTCTTCAACAAAATTAGTTAAGCTTATTATTTCAGTGAATGAATGTGCGATAAAGTGTAATGAGTTGTAGAATAGTGCAAAGCAAGAAAGGGTGGCAATCGGGAGAATATCTATCTGCGTTCTTTGTCAAGGAACAGTTCAAGGACATCTATAGTGCATGTTCATTTATGGTATCCAGAAATTTTACAACTGTATAACGGGGATTGTCTGCCACAAAAAAATCTTGCTGGCGATAGTAAATTTTGAGAAAAACAGCTATTTTTTTTCTTGGTTTGTAATCTGATTAGTTATAAATCTGCTGTGTATTCCTGTTATATGTTGTGCATTATCAGACGTTCTGATTGTATTCCATTTTTCAGTTGTTCTCAAGGATTGTTTATTTTCTTGTAAAATGAGACATTCAAGTATTATTGATATTTCCATGCAAAATTTTTATGATTTAATTTACAAGGATCAAGTTACACTTTTCTT

Ace file of the UniGene sp_v3.0_unigene7900

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9R8Q6_RICCO	-	-	0.0	58%
FL-Next	sp=U-box domain-containing protein 44; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%

Source	Gene names
Sma3	At1g20780; At1g76390; F15M4.11; F2D10.27; GSVIVT00002902001; LOC_Os03g45420; LOC_Os12g17880; LOC_Os12g17900; OSJNBa0075A22.19; Os03g0657100; Os12g0277000; OsI_12864; OsI_19053; OsI_37966; OsJ_11966; OsJ_17697; OsJ_35755; PHYPADRAFT_111967; PHYPADRAFT_1120

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20780.1	PUB44, ATPUB44, SAUL1 senescence-associated E3 ubiquitin ligase 1 chr1:7217812-7220609 FORWARD LENGTH=801	52%
RefSeq	Arabidopsis thaliana	NP_564125.2	U-box domain-containing protein 44 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002333360.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LM76

Fln msg: your sequence is shorter than subject: 693 - 801

Fln protein: SLEEDILCALKDIQHLCRKSRINKYRVRNAGLIPMIVERLKTGVEQVRCRALETLCVLVEDDEDNKEAIAEADYIRTYVKCLSRELSQEREEAVSLLLELSKSQSLSEKIGSANGAILILVGMTSSKSENNVAVKNAEKTLENLELCDKNVRQMAENGRLQPLIKRLVEGSEETQLEMTNYLAEVVLSNDGKALVAEKAAPTLVNILGSGSLPAREASLRALNQISSYDANGKILIEAGILPPLIKDLFTVGVNHLPIKLKEVLATTLANVVNSGSEFESAPIDADGNTLLSESIIHNLLHLISNTGPAIEAKLLQVLVGLASSSQAVLNVVTAIKSAGATVSLLQFIDAPQRDVRIASVKLLQRLCPHMGQELADGLRVSTGQLGTLIMIMGANGLTEEHAAAACLVANLPERDAILTRSLLDQGAFPVVVGKIDEIQHGETRGSRFRTPYLEGLVGILARFTFLLDDVAVLALAKQYNLASLFTDLLQTNGFDEVQRLSAVALENLSTYSKTLSIIPEVSKGGLCANLFGCLFSPSKPTGLCPVHHGICSSKNTFCLLEAKTVTKLVACLDHENVLVVESSLAAICTLVNDSVDVERGVFILDKADAIQHILDILQENKTEVLRQRAVWLVERILRIDDLARAISADPKTNTALVDAFRHGNYNTRQVAEQALKHLNKIPNFSGVFNKIS*

Protein Length: 694

Fln nts: TGAGCTTAGAGGAAGATATATTATGTGCCTTGAAAGATATACAACATCTCTGTCGCAAAAGTAGAATCAACAAATATCGGGTACGTAATGCTGGGTTGATACCTATGATTGTTGAGCGGTTGAAAACTGGTGTTGAGCAAGTGCGCTGTCGAGCTCTTGAAACTCTTTGTGTACTAGTAGAAGATGATGAAGACAATAAGGAAGCTATTGCTGAAGCAGATTACATCCGTACCTATGTTAAATGTTTATCACGGGAGCTTTCTCAGGAAAGGGAGGAAGCAGTATCTTTGTTATTGGAGCTTTCCAAATCCCAGTCTTTATCTGAAAAGATAGGTTCTGCAAATGGTGCTATTCTTATATTAGTTGGAATGACTAGCAGCAAATCTGAAAATAATGTGGCTGTTAAGAATGCTGAAAAAACCCTTGAGAATTTGGAATTGTGTGACAAGAATGTTCGTCAAATGGCTGAAAATGGTCGTTTGCAACCCCTTATTAAACGCCTTGTAGAAGGCTCAGAAGAGACACAGCTGGAGATGACAAACTACCTTGCTGAGGTGGTCCTTAGTAATGATGGAAAGGCGCTTGTAGCAGAAAAGGCTGCTCCAACACTGGTGAATATACTGGGAAGTGGCAGTTTGCCAGCAAGGGAAGCTAGCTTGAGGGCTTTAAATCAGATTTCTTCATATGATGCGAATGGGAAAATACTGATTGAGGCTGGTATTCTTCCTCCTCTTATCAAGGATCTCTTTACTGTGGGTGTAAATCATTTACCGATTAAGCTAAAGGAGGTCTTAGCTACGACTCTAGCAAATGTTGTAAACTCTGGATCTGAATTTGAATCAGCTCCAATTGATGCTGATGGCAATACTCTACTTTCAGAAAGTATCATTCATAATTTATTGCATTTGATTAGCAATACAGGGCCTGCGATAGAAGCAAAGCTACTTCAAGTGCTCGTGGGCCTAGCAAGCTCTTCACAAGCTGTTCTCAATGTTGTAACTGCCATTAAAAGTGCTGGAGCTACTGTTAGCCTCCTTCAGTTCATTGATGCACCGCAAAGGGATGTTCGTATTGCATCTGTGAAGCTGCTTCAACGGCTCTGTCCTCATATGGGCCAGGAACTTGCAGATGGGTTGCGAGTAAGTACTGGCCAGCTTGGTACTTTAATAATGATAATGGGAGCAAATGGTTTAACAGAGGAACATGCAGCTGCTGCATGCCTGGTGGCAAATCTCCCAGAAAGGGATGCTATTCTGACTCGTTCACTTCTTGATCAAGGTGCATTTCCAGTAGTAGTGGGTAAAATTGATGAGATACAGCATGGTGAAACAAGAGGCAGCCGCTTTCGCACACCTTACTTGGAGGGATTAGTAGGCATCTTAGCAAGATTTACATTTTTGCTTGATGATGTAGCAGTTCTTGCTCTTGCTAAGCAGTATAATCTGGCGTCTTTATTTACAGATTTACTTCAAACAAATGGTTTTGATGAAGTACAAAGATTGTCAGCAGTTGCACTGGAAAATCTATCTACATACTCGAAAACACTTTCAATAATTCCGGAGGTTTCCAAAGGTGGTCTTTGTGCAAATTTGTTTGGGTGCCTATTCTCACCTTCTAAGCCAACTGGTCTTTGTCCAGTTCATCATGGGATTTGCTCGTCCAAAAATACCTTTTGCCTTTTGGAAGCAAAAACAGTAACTAAGTTGGTTGCATGCCTAGATCACGAAAATGTACTGGTGGTTGAATCATCTCTTGCAGCAATATGTACTCTTGTCAATGATTCGGTTGATGTGGAACGTGGGGTTTTTATTTTGGATAAAGCGGATGCTATACAGCATATCCTAGATATTCTACAAGAAAACAAAACAGAAGTGCTCCGTCAGCGGGCAGTATGGTTAGTGGAAAGAATATTACGAATTGATGATCTTGCCCGTGCTATTTCTGCCGATCCTAAAACAAATACAGCATTAGTTGATGCCTTTCGTCATGGTAACTATAATACTCGGCAAGTTGCAGAACAGGCTTTGAAACATCTGAATAAAATTCCAAATTTCTCTGGGGTCTTCAACAAAATTAGTTAA___GCTTATTATTTCAGTGAATGAATGTGCGATAAAGTGTAATGAGTTGTAGAATAGTGCAAAGCAAGAAAGGGTGGCAATCGGGAGAATATCTATCTGCGTTCTTTGTCAAGGAACAGTTCAAGGACATCTATAGTGCATGTTCATTTATGGTATCCAGAAATTTTACAACTGTATAACGGGGATTGTCTGCCACAAAAAAATCTTGCTGGCGATAGTAAATTTTGAGAAAAACAGCTATTTTTTTTCTTGGTTTGTAATCTGATTAGTTATAAATCTGCTGTGTATTCCTGTTATATGTTGTGCATTATCAGACGTTCTGATTGTATTCCATTTTTCAGTTGTTCTCAAGGATTGTTTATTTTCTTGTAAAATGAGACATTCAAGTATTATTGATATTTCCATGCAAAATTTTTATGATTTAATTTACAAGGATCAAGTTACACTTTTCTT

Fln Alignment:

Contig7900___EEDILCALKDIQHLCRKSRINKYRVRNAGLIPMIVERLKTGVEQVRCRALETLCVLVEDDEDNKEAIAEADYIRTYVKCLSRELSQEREEAVXXXXXXXXXXXXXXXIGSANGAILILVGMTSSKSENNVAVKNAEKTLENLELCDKNVRQMAENGRLQPLIKRLVEGSEETQLEMTNYLAEVVLSNDGKALVAEKAAPTLVNILGSGSLPAREASLRALNQISSYDANGKILIEAGILPPLIKDLFTVGVNHLPIKLKEVLATTLANVVNSGSEFESAPIDADGNTLLSESIIHNLLHLISNTGPAIEAKLLQVLVGLASSSQAVLNVVTAIKSAGATVSLLQFIDAPQR-DVRIASVKLLQRLCPHMGQELADGLRVSTGQLGTLIMIMG-ANGLTEEHAAAACLVANLPERDAILTRSLLDQGAFPVVVGKIDEIQHGETRGSRFRTPYLEGLVGILARFTF-XXXXXXXXXXXKQYNLASLFTDLLQTNGFDEVQRLSAVALENLSTYSKTLSIIPEVSKGGLCANLFGCLFSPSKPTGLCPVHHGICSSKNTFCLLEAKTVTKLVACLDHENVLVVESSLAAICTLVNDSVDVERGVFILDKADAIQHILDILQENKTEVLRQRAVWLVERILRIDDLARAISADPKTNTALVDAFRHGNYNTRQVAEQALKHLNKIPNFSGVFNKIS
Q9LM76______________ETDILQALMHVRQICRTIRSNRHGVRNSQLIHMIIDMLKSTSHRVRYKALQTLQVVVEGDDESKAIVAEGDTVRTLVKFLSHEPSKGREAAVSLLFELSKSEALCEKIGSIHGALILLVGLTSSNSENVSIVEKADRTLENMERSEEIVRQMASYGRLQPLLGKLLEGSPETKLSMASFLGELPLNNDVKVLVAQTVGSSLVDLMRSGDMPQREAALKALNKISSFEGSAKVLISKGILPPLIKDLFYVGPNNLPIRLKEVSATILANIVNIGYDFDKA-------TLVSENRVENLLHLISNTGPAIQCKLLEVLVGLTSCPKTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLASIKLLHNLSPFMSEELAKALCGTAGQLGSLVAIISEKTPITEEQAAAAGLLAELPDRDLGLTQEMLEVGAFEKIISKVFGIRQGDIKGMRFVNPFLEGLVRILARITFVFNKEARAINFCREHDVASLFLHLLQSNGQDNIQMVSAMALENLSLESIKLTRMPDPPPVNYCGSIFSCVRKPHVVNGLCKIHQGICSLRETFCLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDVEKGVKILDEADGIRHILNVLRENRTERLTRRAVWMVERILRIEDIAREVAEEQSLSAALVDAFQNADFRTRQIAENALKHIDKIPNFSSIFPNIA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1128	85		14		0.993533
1170	85		14		0.993533
1171	85		14		0.993533
1172			14	85	0.993533
1191		14		85	0.993533
1652			10	90	0.90298
1668		20		80	0.995493
1783		12		87	0.992554
1859	90		10		0.90298
1860	90		10		0.90298
1861	90		10		0.90298
1862	90		10		0.90298
1865	90	10			0.90298
1867	90			10	0.90298
1868		90		10	0.90298
2345		11		88	0.999952
2378		50		50	1.0
2483	25	75			0.996473
2487			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain