SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7894

Length: 1086 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7894

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative alpha/beta hydrolase; 66690-68793 [Arabidopsis thaliana]	-	-	5.0e-37	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	Gene names
Sma3	At3g10870; At3g29770; F13E17.2; GSVIVT00005371001; GSVIVT00029477001; OJ1118_F06.9; OsI_37243; PHYPADRAFT_197469; PHYPADRAFT_210708; PHYPADRAFT_211389; POPTRDRAFT_1076411; POPTRDRAFT_259423; POPTRDRAFT_574466; POPTRDRAFT_581084; POPTRDRAFT_950712; T7M13.5

Source	GOs	Term	Type	Identity
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	indoleacetic acid conjugate metabolic process	GO:0033473	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQW9

Fln msg:

Fln protein: MASENIVQEKINMDCEYVAARGIHFVLVHGGEHGAWCWYKIVELLEKDGHKVSAIDLMSAGTSPVTADSITSFEEYNQPLMHFLAKFPQTEKIVLVGHSLGGVSVARGSEEFPHLIAVAVYVCALMVRGGEYMQREKEMMELDRDIAEQVEYNFGNGMEEPPTSGKLPKKILKDFFYGTTSTLDATLASLLLRSCPTRALTNLSLETTDERYGVVPRVYIKTIKDNALSLAKQEELIANSPPEKVYSLDTDHSPFFCAPEKLHSLLLEIANTYCL*

Protein Length: 277

Fln nts: ACATGGGGAAATACACTTAACTACATGGTGTATATACCCCAACATAACAGATTGAGAATTTCTGGAATTTAATACACTTGAGACATGACTTGTTCCAAACTAAGAAGAAGAATTAAGCTTAGAAAAGGAAGGGACAAGATGATTTCCATGCAAGACGATCGGGAGCCATAATATAGTAGAGTTTTAAGGATAGTTTGTGAAGTGGATGATTAGCTAATAAAATTGGAAGAC_-_ATGGCTTCTGAAAACATAGTGCAGGAAAAGATAAACATGGATTGTGAATATGTAGCAGCAAGAGGAATCCATTTTGTGTTGGTTCATGGAGGTGAGCATGGAGCATGGTGCTGGTATAAGATTGTGGAGCTTCTTGAGAAAGATGGTCACAAGGTGTCAGCAATCGATCTGATGAGTGCTGGTACAAGTCCTGTTACAGCTGATTCCATCACCTCATTTGAGGAATATAATCAGCCTCTTATGCACTTCCTTGCCAAGTTCCCACAGACAGAAAAGATAGTGTTAGTGGGACACAGCTTGGGAGGCGTTAGCGTAGCCCGTGGATCTGAAGAATTCCCGCATCTCATTGCGGTAGCAGTGTATGTCTGCGCTCTTATGGTTCGAGGTGGAGAATACATGCAGCGGGAAAAGGAAATGATGGAGCTGGACAGAGACATTGCTGAGCAGGTGGAATATAATTTTGGCAATGGCATGGAAGAACCTCCGACATCTGGAAAGCTGCCTAAAAAGATTCTGAAGGATTTCTTCTACGGTACAACCTCCACATTGGATGCCACACTGGCTTCTCTGTTGCTCCGATCATGTCCAACCAGGGCACTGACAAACCTGAGCCTGGAGACCACAGATGAGCGGTATGGGGTTGTTCCAAGAGTTTATATCAAAACTATTAAAGATAACGCGCTCTCTCTTGCCAAGCAAGAAGAGCTCATTGCCAATTCGCCACCAGAGAAGGTTTACAGTCTGGACACAGACCATAGTCCATTCTTCTGTGCACCAGAGAAGCTGCATAGCCTGCTATTGGAGATCGCTAACACATACTGCTTATGA___TTGCAAATAGTCACTTTTACATCGAAG

Fln Alignment:

Contig7894___MASENIVQEKINMDCEYVAARGIHFVLVHGGEHGAWCWYKIVELLEKDGHKVSAIDLMSAGTSPVTADSITSFEEYNQPLMHFLAKFPQTEK---IXXXXXXXXXXXXARGSEEFPHLIAVAVYVCALMVRGGEYMQREKEMMELDRDIAEQVEYNFGNGMEEPPTSGKLPKKILKDFFYGXXXXXXXXXXXXXXRSCPTRALTNLSLETTDERYGVVPRVYIKTIKDNALSLAKQEELIANSPPEKVYSLDTDHSPFFCAPEKLHSLLLEIANTYCL
A9NQW9______________MDSQNISQEKKNMNCENPAAGGIHFVLVHGGMHGAWCWYKIMELLEKDGHRVSAIDLMSAGTNPVTADSIMSFEEYNQPLMHFLAKLPRTEKRAQIVLVGHSLGGVSIARGSEDFPHLIAVAVYVCALMFRGGESMQREKEMMELDKDILEKVEYNFGNGIGEPPTSGQVPRNFQKDFFYGTSSTLDVTLASLLLRPCPHMAVTNMSLKTTDEGYGVVPRVYIKTLKDNAFSLAKQEELITNSPPEKVYSIDSDHSPFFSAPETLHSLLLEIANTYCV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
404	25	75			0.996473
431	75		25		0.996473
435	20	80			0.995493
438	80		20		0.995493
439			20	80	0.995493
441		80		20	0.995493
467	40	60			1.0
629		22		77	0.999999
673		28		71	1.0
717		14	85		0.993533
728	33		66		1.0
1027		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain