SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7887

Length: 2289 nt

UniGene Fasta

>sp_v3.0_unigene7887
TCAGGACCAATCCATCTGCAGATTTGCAGCTCAGAAGGGAAAAGGAGAGTTTCAGTCTTCTTCATTCCCAGACGAAGTTTTGGAACATGTTTTGGTTTTCCTGTCCTCCCAGAAGGACAGAAATTCTGTTTCCTTGGTATGCAAGGCCTGGCACAGGGTTGAGGCGTGGACGCGCCAGCAGGTGTTCATTGGCAACTGTTATGCTGTCTCCCCACAGATTATGATAAAAAGGTTTCCCAAGATCAAGTCTGTGTCACTCAAGGGGAAGTCCAGATTTGCAGATTTTAATTTGTTGCCACCAAATTGGGGGGCCCATCTCACTCCATGGGTGTCGGCCATGGCAACTGCTTATCCATTACTTGAGAGGCTGTACTTGAAGAGGATGACTATCACAGATTATGATCTCACATTGCTTGCAAATTCCTTCCTATATTTCAAGGAGCTTGTTATGGTTTGTTGTGATGGATTCAGCACAGGTGGCCTCGCTTCGATCGCAAGCAAATGCAGGCAATTGACCACACTTGATTTGAATGAGGACGAAATACATGATAATGGAGAAGATTGGCTGGCTTGCTTTCCTGAGACTTTGACGTCTCTAAGATCTCTTTGTTTTGATTGTTTGGAGGGCCCAATAAATTTTGATGCACTTGAAAGATTAGTTGCAAGATGCCCCTCTCTGAAGAAGCTCAGGCTAAATAGAAATGTTTCTATAGTGCAGTTACAAAGGTTGATAATAAAAGCACCACAGCTTACTCATCTAGGAACAGGCTCATTTTTCTATGAGTTCCAACCGGAGCAAGTAGCAGATCTTCTCGCAGCCTTCAGCAATTGTAAACAACTTCAATGTTTGTCAGGATTTCGTGAAGTTGTGCCAGAGTATCTACCTGCGGTATATCCAGTTTGCTCTAATTTAACATCTCTAAACTTCAGCTATGCTGTTATTGGCAGCAGAGAGTTGGAAGGAATAGTCTGTCACTGTCGTAAATTGCAGCTACTCTGGGTTTTGGATTCGGTGGGAGACAAAGGTTTGGAGGCAGCAGCTACAACGTGCAAGGATCTGAGGGATCTCCGTGTATTTCCCGTGGATGCACGTGAAGATGGTGAAGGTTGTGTATCTGAACGGGGCCTTGTTGCAATCTCCGAGGGGTGTCCAAATCTTGAGTCCATTCTATACTTTTGTCAGCGTATGACCAATAAAGCAGTTGTGACCATGTCGCATAACTGTTCCAAACTTGCCAGCTTTCGTCTCTGTATCATGGGTCGACACCAACCTGATCATTTAACTGGTGAACCTATGGATGAGGGATTTGGGGCAATCGTAAGAAACTGCAAAAGCCTAACAAGGTTGGCAGTATCTGGTCTACTCACTGACAAAGCATTTCAGTATTTTGGAGCCTATGGTGAAAGATTAGAGACCTTATCAGTAGCATTTGCTGGGGAAAGTGACCTCAGCATGAAGTATGTGCTCGATGGATGCAAGAACCTTCGGAAGCTTGAGATTAGAGACAGTCCATTTGGAGATGTTGCCCTCTTGTCTGGTTTACATAACTATGAAAATATGCGGTTTTTGTGGATGTCTGATTGCAGACTTACTCTACAGGGATGCACAGAGCTGGCCAAGACGTTGCCTGGACTTAATGTTGAAATAATCAGAGAAAATGAATGCAATGATTCTCTTGTTGAGAGACTTTATGCTTATCGCACTGTAGCAGGTCCACGGAAAGACATGCCGTCATTTGTAACCATCTTATAGCCACTTCACATGAATTTTGTGGTTATGGCTCTGCTACATATGGGCAACCTGTTAGGGCTATCCTACTAAATTAATCTTGCATCAATATTACTGACGAAAAAGCCCATGTCCATAATGCCTTTACTTCACCAAAGGAGGAGCAATAGAGCAGGCCAGGTTATTGCCATTTTACTTTGGAAACTTTCTTCAGGTTGTAGCTGCCTCTTGAAGGGTTGGAAGGATGTACGATTCACTGATGCAGACTGCTTATTCTTGTTGCTCCCTAAAGTCGAATCTAGTTAAAATGCCAAACAATAAACTGGTGATAGAAATGCTGAAGGTGATGAAAGGTGGAGGATTACAGATGAATCCCTTCTGCGTGCATTGGATAGTGTTTTAAGGGACTGAATGTCTCAATTGGTCTGTTTGTTTTAATTTCAAACAATTGACCCATCTTCGATGCAATCTGTGATTTGACTTGAATTCAATCTGTGATTTGACTTGAATTTTATTTGCTATATGACTGATGCGGAGCTTGTTGAGGAGGTTTGGAATTG

Ace file of the UniGene sp_v3.0_unigene7887

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR1/AFB auxin receptor protein PintaAFB4A n=2 Tax=Pinus taeda RepID=C9EHS9_PINTA	-	-	0.0	98%
FL-Next	tr=TIR1/AFB auxin receptor protein PintaAFB4A; Pinus taeda (Loblolly pine).	-	-	0.0	98%
Sma3	TIR1-like protein	-	-	9.664e-20	-

Source	Gene names
Sma3	AFB1; AFB2; AFB3; At1g12820; At3g26810; At3g62980; At4g03190; At4g24390; At5g49980; F13K23.7; F4C21.11; FBL1; FBL18; FBL2; FBL3; FBL4; FBL5; FBL6; FBL7; FBL8; FBX14; GER1; GRH1; GSVIVT00006948001; GSVIVT00009745001; GSVIVT00015144001; GSVIVT00023591001; G

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	-
Sma3	nuclear SCF ubiquitin ligase complex	GO:0043224	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	auxin binding	GO:0010011	Molecular Function	-
Sma3	response to molecule of bacterial origin	GO:0002237	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	pollen maturation	GO:0010152	Biological Process	-
Sma3	lateral root formation	GO:0010311	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	negative regulation of transcription by glucose	GO:0045014	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	developmental growth	GO:0048589	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G49980.1	AFB5 auxin F-box protein 5 chr5:20334420-20336531 REVERSE LENGTH=619	62%
RefSeq	Arabidopsis thaliana	NP_568718.1	transport inhibitor response 1-like protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002306554.1	f-box family protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C9EHS9

Fln msg: atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning,

Fln protein: QDQSICRFAAQKGKGEFQSSSFPDEVLEHVLVFLSSQKDRNSVSLVCKAWHRVEAWTRQQVFIGNCYAVSPQIMIKRFPKIKSVSLKGKSRFADFNLLPPNWGAHLTPWVSAMATAYPLLERLYLKRMTITDYDLTLLANSFLYFKELVMVCCDGFSTGGLASIASKCRQLTTLDLNEDEIHDNGEDWLACFPETLTSLRSLCFDCLEGPINFDALERLVARCPSLKKLRLNRNVSIVQLQRLIIKAPQLTHLGTGSFFYEFQPEQVADLLAAFSNCKQLQCLSGFREVVPEYLPAVYPVCSNLTSLNFSYAVIGSRELEGIVCHCRKLQLLWVLDSVGDKGLEAAATTCKDLRDLRVFPVDAREDGEGCVSERGLVAISEGCPNLESILYFCQRMTNKAVVTMSHNCSKLASFRLCIMGRHQPDHLTGEPMDEGFGAIVRNCKSLTRLAVSGLLTDKAFQYFGAYGERLETLSVAFAGESDLSMKYVLDGCKNLRKLEIRDSPFGDVALLSGLHNYENMRFLWMSDCRLTLQGCTELAKTLPGLNVEIIRENECNDSLVERLYAYRTVAGPRKDMPSFVTIL*

Protein Length: 585

Fln nts: TCAGGACCAATCCATCTGCAGATTTGCAGCTCAGAAGGGAAAAGGAGAGTTTCAGTCTTCTTCATTCCCAGACGAAGTTTTGGAACATGTTTTGGTTTTCCTGTCCTCCCAGAAGGACAGAAATTCTGTTTCCTTGGTATGCAAGGCCTGGCACAGGGTTGAGGCGTGGACGCGCCAGCAGGTGTTCATTGGCAACTGTTATGCTGTCTCCCCACAGATTATGATAAAAAGGTTTCCCAAGATCAAGTCTGTGTCACTCAAGGGGAAGTCCAGATTTGCAGATTTTAATTTGTTGCCACCAAATTGGGGGGCCCATCTCACTCCATGGGTGTCGGCCATGGCAACTGCTTATCCATTACTTGAGAGGCTGTACTTGAAGAGGATGACTATCACAGATTATGATCTCACATTGCTTGCAAATTCCTTCCTATATTTCAAGGAGCTTGTTATGGTTTGTTGTGATGGATTCAGCACAGGTGGCCTCGCTTCGATCGCAAGCAAATGCAGGCAATTGACCACACTTGATTTGAATGAGGACGAAATACATGATAATGGAGAAGATTGGCTGGCTTGCTTTCCTGAGACTTTGACGTCTCTAAGATCTCTTTGTTTTGATTGTTTGGAGGGCCCAATAAATTTTGATGCACTTGAAAGATTAGTTGCAAGATGCCCCTCTCTGAAGAAGCTCAGGCTAAATAGAAATGTTTCTATAGTGCAGTTACAAAGGTTGATAATAAAAGCACCACAGCTTACTCATCTAGGAACAGGCTCATTTTTCTATGAGTTCCAACCGGAGCAAGTAGCAGATCTTCTCGCAGCCTTCAGCAATTGTAAACAACTTCAATGTTTGTCAGGATTTCGTGAAGTTGTGCCAGAGTATCTACCTGCGGTATATCCAGTTTGCTCTAATTTAACATCTCTAAACTTCAGCTATGCTGTTATTGGCAGCAGAGAGTTGGAAGGAATAGTCTGTCACTGTCGTAAATTGCAGCTACTCTGGGTTTTGGATTCGGTGGGAGACAAAGGTTTGGAGGCAGCAGCTACAACGTGCAAGGATCTGAGGGATCTCCGTGTATTTCCCGTGGATGCACGTGAAGATGGTGAAGGTTGTGTATCTGAACGGGGCCTTGTTGCAATCTCCGAGGGGTGTCCAAATCTTGAGTCCATTCTATACTTTTGTCAGCGTATGACCAATAAAGCAGTTGTGACCATGTCGCATAACTGTTCCAAACTTGCCAGCTTTCGTCTCTGTATCATGGGTCGACACCAACCTGATCATTTAACTGGTGAACCTATGGATGAGGGATTTGGGGCAATCGTAAGAAACTGCAAAAGCCTAACAAGGTTGGCAGTATCTGGTCTACTCACTGACAAAGCATTTCAGTATTTTGGAGCCTATGGTGAAAGATTAGAGACCTTATCAGTAGCATTTGCTGGGGAAAGTGACCTCAGCATGAAGTATGTGCTCGATGGATGCAAGAACCTTCGGAAGCTTGAGATTAGAGACAGTCCATTTGGAGATGTTGCCCTCTTGTCTGGTTTACATAACTATGAAAATATGCGGTTTTTGTGGATGTCTGATTGCAGACTTACTCTACAGGGATGCACAGAGCTGGCCAAGACGTTGCCTGGACTTAATGTTGAAATAATCAGAGAAAATGAATGCAATGATTCTCTTGTTGAGAGACTTTATGCTTATCGCACTGTAGCAGGTCCACGGAAAGACATGCCGTCATTTGTAACCATCTTATAG___CCACTTCACATGAATTTTGTGGTTATGGCTCTGCTACATATGGGCAACCTGTTAGGGCTATCCTACTAAATTAATCTTGCATCAATATTACTGACGAAAAAGCCCATGTCCATAATGCCTTTACTTCACCAAAGGAGGAGCAATAGAGCAGGCCAGGTTATTGCCATTTTACTTTGGAAACTTTCTTCAGGTTGTAGCTGCCTCTTGAAGGGTTGGAAGGATGTACGATTCACTGATGCAGACTGCTTATTCTTGTTGCTCCCTAAAGTCGAATCTAGTTAAAATGCCAAACAATAAACTGGTGATAGAAATGCTGAAGGTGATGAAAGGTGGAGGATTACAGATGAATCCCTTCTGCGTGCATTGGATAGTGTTTTAAGGGACTGAATGTCTCAATTGGTCTGTTTGTTTTAATTTCAAACAATTGACCCATCTTCGATGCAATCTGTGATTTGACTTGAATTCAATCTGTGATTTGACTTGAATTTTATTTGCTATATGACTGATGCGGAGCTTGTTGAGGAGGTTTGGAATTG

Fln Alignment:

Contig7887___QDQSICRFAAQKGKGEFQSSSFPDEVLEHVLVFLSSQKDRNSVSLVCKAWHRVEAWTRQQVFIGNCYAVSPQIMIKRFPKIKSVSLKGKSRFADFNLLPPNWGAHLTPWVSAMATAYPLLERLYLKRMTITDYDLTLLANSFLYFKELVMVCCDGFSTGGLASIASKCRQLTTLDLNEDEIHDNGEDWLACFPETLTSLRSLCFDCLEGPINFDALERLVARCPSLKKLRLNRNVSIVQLQRLIIKAPQLTHLGTGSFFYEFQPEQVADLLAAFSNCKQLQCLSGFREVVPEYLPAVYPVCSNLTSLNFSYAVIGSRELEGIVCHCRKLQLLWVLDSVGDKGLEAAATTCKDLRDLRVFPVDAREDGEGCVSERGLVAISEGCPNLESILYFCQRMTNKAVVTMSHNCSKLASFRLCIMGRHQPDHLTGEPMDEGFGAIVRNCKSLTRLAVSGLLTDKAFQYFGAYGERLETLSVAFAGESDLSMKYVLDGCKNLRKLEIRDSPFGDVALLSGLHNYENMRFLWMSDCRLTLQGCTELAKTLPGLNVEIIRENECNDSLVERLYAYRTVAGPRKDMPSFVTIL
C9EHS9______________QDQSICRFAAQKGKGEIQSSSFPDEVLEHVLVFLSSQKDRNSVSLVCKAWHRVEAWTRQQVFIGNCYAVSPQIMIKRFPKIKSVSLKGKPRFADFNLVPPNWGAHLTPWVSAMATAYPLLERLYLKRMTITDYDLTLLANSFLYFKELVMVCCDGFSTGGLASIASKCRQLTTLDLNEDEIHDNGEDWLACFPETLTSLRSLCFDCLEGPVNFDALERLVARCPSLKKLRLNRNVSIVQLQRLIIKAPQLTHLGTGSFFYEFQLEQVADLLAAFSNCKQLQCLSGFREVVPEYIPAVYPVCSNLTSLNFSYAVIGSRELEGIVCHCRKLQLLWVLDSVGDKGLEAAATTCKDLRDLRVFPVDAREDGEGCVSERGLVAISEGCPNLESILYFCQRMTNKAVVTMSHNCSKLASFRLCIMGRHQPDHLTGEPMDEGFGAIVRNCKSLTRLAVSGLLTDKAFQYFGAYGERLETLSVAFAGESDLSMKYVLDGCKNLRKLEIRDSPFGDVALLSGLHHYENMRFLWMSDCRLTLQGCTELAKKMPGLNVEIIRENECNDSLVEKLYAYRTVAGPRKDMPSFVTIL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
2213		12		87	0.992554
2219		83		16	0.994512
2220	83			16	0.994512
2223		83		16	0.994512
2226		16		83	0.994512
2227			83	16	0.994512
2230	16			83	0.994512
2235	20	20		60	0.99255
2261		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain