SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7879

Length: 1432 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7879

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana] gb\|AAF87046.1\|AC006535_24 T24P13.7 [Arabidopsis thaliana] gb\|AEE30721.1\| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-
Sma3	transport	GO:0006810	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000348	-	0.0	-
Sma3	GOLD	IPR009038	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G26690.1	emp24/gp25L/p24 family/GOLD family protein chr1:9224299-9225682 REVERSE LENGTH=214	49%
RefSeq	Arabidopsis thaliana	NP_564256.1	emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002311321.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNU9

Fln msg:

Fln protein: MDCLQTYQMERFMAFLLVFLCLGVRQVQCIRFELPSGQTKCIAEEIQSNVLVLGNYHVVAPGSDEHHYGTGNAQPVADDHKITVRVTSPYGNSLHYADKVESGQFALTTTESGDYMACFWILPTQHPITASVELEWKTGVFAKDWAKIAKRDKIDGMELELRKLEEYVTSIYDEMLYLREREGEMQDLNASTNSKMAWFGFMSFLICLSVAAWQLWHLKSFF*

Protein Length: 224

Fln nts: ATCAGAGACGACCAGCCGTTCAATCCCTCCAATAGGTACAACCTCTACTGCCTAATATAAATGTTGACCCATTTTAAAATGCATGTCCTTCTCAGAGCGTAGCAATATTTCGTTCATTTTACGAAGTGATTGATTTCTTCTCTTCAAACTAGATTGCTTAAGAGTTCCTATTTTACCAACAAGCCCTTATTCTGTTCATAGATCAGGGATTCAAATCGAGATCTTGGCTGGATCTGCTTTCAAATCCCCATTTGGGTTTTCTCTACATATGACATAAGTCG_-_ATGGACTGTCTGCAAACTTATCAGATGGAACGTTTTATGGCGTTTTTGTTGGTATTTCTGTGTTTGGGTGTGCGGCAAGTGCAGTGCATTCGCTTCGAGTTGCCATCAGGGCAGACCAAGTGCATCGCAGAGGAGATCCAAAGCAATGTATTGGTGTTGGGAAATTATCATGTTGTAGCACCAGGCTCAGATGAACATCATTATGGGACCGGCAATGCCCAACCTGTTGCCGATGATCACAAGATCACTGTTAGGGTGACTTCCCCTTATGGCAATAGTTTGCATTATGCTGATAAAGTGGAATCGGGTCAATTCGCCTTAACAACTACTGAAAGTGGTGATTACATGGCATGTTTCTGGATACTTCCTACTCAACATCCCATAACTGCCTCTGTTGAACTGGAATGGAAGACTGGGGTTTTTGCTAAGGATTGGGCTAAAATTGCCAAGAGAGACAAAATTGATGGAATGGAACTTGAGTTAAGGAAGCTTGAAGAATATGTCACTTCTATCTATGATGAGATGCTCTATCTGCGAGAAAGGGAAGGGGAAATGCAGGATCTAAACGCATCAACAAACTCAAAAATGGCTTGGTTTGGTTTCATGTCGTTTTTGATCTGCCTATCAGTAGCAGCTTGGCAGCTGTGGCATTTAAAGAGCTTTTTTTGA___AAGAAAAAAGTTGCTCTAGACAACCTTGAATCTGTGTTCAGGAAATCTGGAAAATTATCTTTTGTTTTGAAGTTAGTTATTTGAAATGCACTTTTAACTGATTTCCGACTGCAGGAATTTTCAGTTACAGGGGATTCTTTTCTGATTTTATTTATAAATTTTGCTCAGAAAAAGCGATTGAGGGTCTTTATTTATCAAATCGGACCCTTGAAAATATAACTTGCATGCATGAATATGATTCAGTGGTGACTGAGCATATGATTAATTCATGTAATACTGTTATGGAACCTTTTGCAACATATTAGCCTCAACAACAGGTGACATAGAATATGATGGATATCTTGTAGAAAGTCCAACTCCGATATCTATCTTGTACTAGGCAGACTAATGACAACATTCTTCATTTGCTTATCTGGTCTTGTATTCTGTAACGCTGTACTTTCTTTTGTTTTGCAGCACTCATCAAAGTTGAAAATTTTTGC

Fln Alignment:

Contig7879___MDCLQTYQMERFMAFLLVFLCLGVRQVQCIRFELPSGQTKCIAEEIQSNVLVLGNYHVVAPGSDEHHYGTGNAQPVADDHKITVRVTSPYGNSLHYADKVESGQFALTTTESGDYMACFWILPTQHPITASVELEWKTGVFAKDWAKIAKRDKIDGMELELRKLEEYVTSIYDEMLYLREREGEMQDLNASTNSKMAWFGFMSFLICLSVAAWQLWHLKSFF*KKKV
A9NNU9______________MGSLRMYQMERFRAFLLVFLCLGLCQVQCIRFELPSGQTKCIAEEIQNNVMVLGNYHVVAPGSDEHHYGTGSAQPVADDHKITVRVTSPYGNSLHYADKVESGQFAFTTTESGDYMACFWILPSQPPITASVELEWKTGVFAKDWTKIAKRDKIDGMELELRKLEEYVTSIHDEMIYLRAREEEMQNLNASTNSKMAWFGLMSFLVCLSVAAWQLWHLKSFFERKKL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
98	33	66			0.997452
101	33	33	33		0.997753
103		66	33		0.997452
110	11			88	0.923564
111		88		11	0.923564
113			11	88	0.923564
114			11	88	0.923564
115		88	11		0.923564
295	80	20			0.995493
660		25		75	0.996473
725			20	80	0.995493
727		80	20		0.995493
736	83	16			0.994512
737		85		14	0.993533
738	85			14	0.993533
739	85		14		0.993533
740	85		14		0.993533
741	85	14			0.993533
744		14	85		0.993533
747	12		87		0.992554
788		12		87	0.992554
821	28		71		1.0
986	26		73		1.0
1019	16		83		1.0
1147	90		10		0.90298
1302		16		83	0.994512
1359		10		90	0.90298
1360	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain