SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7866

Length: 974 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7866

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Oryza glaberrima (African rice).	-	-	0.0	43%

Source	Gene names
Sma3	GSVIVT00011364001; OsI_09183; PHYPADRAFT_65581;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Chorismate synthase	IPR000453	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Uncharacterised domain NUC173	IPR012978	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: I1P4W6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 975 aas, your sequence is shorter than subject: 285 - 1272

Fln protein: MECDDVDEFQMLGDDQEDLGAAVASRFQNSKATEHRHLCAAVEAMAQVLKDQNLPPSPTAYFAATMTSLEHQAGDRSSVADDEPVAAALCTFLSMVLPKVSHAVLRSKWEATLDSLVKFLKRNSASAGTAKFGMNCISYLLTTGDKSNWLPVESAYGVLLNYATDRRPKVRKRAHLCLEEVLRSYQCSSILVKASEGVEKIFEQFLLIAGGSNSVGTIGKPQVASNGANGAMEVVYILNALKVIAPLLSKSNLKASATFPIAAAVTPIFSDQSRLRCLKWKGAQ*

Protein Length: 286

Fln nts: ATGGGGATGGTTTATTCTGTTTTCTTCAATGGTCTGGTAAAACCCTAGTCTTATTTGCTTCTGTATCTTCCTCTCCATCAGGGCAATACCAGAGTTTTGGCAACC_-_ATGGAGTGTGACGATGTTGACGAGTTCCAAATGCTCGGCGACGACCAGGAAGACCTCGGCGCCGCAGTTGCGTCGAGGTTTCAAAACTCAAAGGCGACGGAACACAGGCATCTCTGCGCCGCAGTGGAGGCCATGGCTCAGGTACTTAAAGACCAGAACCTCCCGCCTTCCCCTACTGCTTATTTTGCAGCCACCATGACGTCTCTGGAGCATCAAGCGGGTGACCGGTCCTCCGTGGCGGACGACGAGCCCGTCGCCGCGGCCCTCTGTACCTTCCTATCCATGGTTTTGCCCAAGGTTTCGCACGCTGTTCTGAGATCCAAATGGGAGGCCACACTCGACAGTCTTGTTAAATTTCTTAAGAGAAATTCTGCATCTGCCGGGACCGCCAAGTTTGGGATGAATTGCATTTCGTACTTGCTTACTACTGGGGACAAGTCTAACTGGTTACCAGTTGAGTCTGCATATGGTGTACTGCTCAATTATGCAACCGACCGTCGGCCCAAGGTGAGGAAACGTGCACACTTGTGTCTGGAAGAGGTTTTGAGAAGTTACCAATGTTCGTCTATACTAGTAAAGGCCAGTGAAGGAGTTGAAAAAATATTTGAACAGTTTCTTCTTATAGCAGGTGGATCTAATTCAGTTGGTACTATAGGAAAACCTCAGGTCGCTTCTAATGGTGCTAATGGAGCCATGGAAGTTGTATACATTCTTAATGCCCTTAAGGTTATTGCACCTTTGCTTTCAAAAAGTAATCTCAAAGCTTCTGCCACATTTCCAATTGCTGCTGCAGTTACGCCAATCTTTTCTGACCAGTCACGTCTAAGATGCTTGAAGTGGAAGGGCGCCCAGTAGCTTCACGTAATATA

Fln Alignment:

Contig7866___DEFQMLGDDQEDLGAAVASRFQNSKATEHRHLCAAVEAMAQVLKDQNLPPSPTAYFAATMTSLEHQAGDRSSVADDEPVAAALCTFLSMVLPKVSHAVLRSKWEATLDSLVKFLKRNSASAGTAKFGMNCISYLLTTGDKSNWLPVESAYGVLLNYATDRRPKVRKRAHLCLEEVLRSYQCSSILVKASEGVEKIFEQFLLIAGGSNSVGTIGKPQVASNGANGAMEVVYILNALKVIAPLLS
I1P4W6______________DELSLM-DGEPDLAAAVLARLGGSPREDDQHLCATAAAMAQAVRDQGVAANPVAYFAAAAAALAPLARAGAGAADRH-VSGALLAFLSAAVPALPPAVARARGREVADDVVRVLEFPSTPDSGVRAGVRCLAHLISAGEKANWEAVEPLYGVVLRLAVDPRPKVRKQSHSCLRDILLSFQRQAVLVPASEGITRCFERFLLLAGGSNAVNT----DVAEGGPKGAKEVLYILNALKCCLPLMS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
271	33	66			0.997452
272	33	66			0.997452
339		50		50	1.0
438		60		40	1.0
493	20		80		0.995493
571		14		85	0.993533
574			85	14	0.993533
758		14		85	0.993533
760			80	20	0.995493
761			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain