SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7865

Length: 2209 nt

UniGene Fasta

>sp_v3.0_unigene7865
ATGGGGAAGTATCCGTTATTTGACGGGAGAGCCACGACAGTGATCAATCTATCCAACCCAAATACGCACCCTGTTACTGTTCCCAGTAATCACCGAAGAGTGACACGTGTGCGCAAAAATATCTGGCCCAATTTTCTTTGGGTTTTTATTCTGCAAATATGGACGGCCTACATAGTATGTCGGTTGGGCTTGGCGGAGAGATACAAATAAGAGGTGGGCGGAGGCATTTATCAGCCACCAACACAGAAAGACGGCAGATAAATTATCAAGAGCGAAAAAAAGGGAGAAGGGAGGCGAGTGAGTGGAAATTAGTTTAGCTTGTTAGGCTTAAGAGGTGGTAGAGGGGAATCGACACCCCCTCTTTGCCCATGGGAACATTAGCGTTACCCCCAGGTTTCAGGTTCCATCCCACTGACGAAGAACTTATATCCTGCTATCTCAAGGGCAAACTCAATCATGGCCTTAAAGAAGCAGAGATCGAGGTTATTAGCGAGGTCGACCTTTACAGAAACGAGCCCTGGGATTTGCCTGAGAAATCCTTCCTGCCCAGCGGTGATATGGAGTGGTATTTCTTTAGTCCTCGTGACAGGAAGTATCCGAATGGTTCACGCACTAATAGGGCTACTGAAGCTGGGTATTGGAAAGCCACAGGAAGGGATCGTAAAGTTTACTCTCGAGCAAACACAGTAGGAATAAAAAGACTTTAGTTTTCTATAGAGGCCGGGCTCCACAAGGTGAACGAACTGATTGGGTAATGCATGAATATCGTCTTGAGGAAAATGGATGTCAGGCAGTGCCTTGTTTGCAGAATGCTTTTGTCTTATGTCGTGTTTTCAAGAAGAGTGGACTTGGTGCAAAAAGTGGAGAACAGTACACAGCACCACTTGAGAAGGGTGATTTATCTCCTACAAAGAAAAATCCCTCCCCTGGTTGCTCTGGTGACATTGAAGTGCAATCAGTAGATCCATCAAAGCCAGTGGAGGGGATTGATGCAAATTTACATTTACCATCAAAAATATCATCGAAGATTTTAATTGATACAACTGGAGATAGTGCGCCACTTAAGAAATGGTTAGACATATTGCTGGATGACACTAGTTCAAACTCTTCAAGTGTAGCAGCTGACGAGGACACAATTCACACACAGGTTGATGCTATGCCAGACACTCCAAGAATGCAATGTGAATCTGCATGTCTTCCATCCGTCGAAACGTGAGCTCCAAAAAATTCCAGTTAATACAAGCTTTCCTCAGTACACAGTTCCAAATGGACGTTTGGATGCATATTTTGAAGAAGAAAGAATGCTAGAGGAAATGTTGTCTGTGGGCTCACAGGACTATACTAATTCTAAAGCATATCATACTTCCCTTGGAGATAGCTGTGCTGATATTTTGAACGGAGGTTATATAAAAGTCAAGAATCTAACACCTTCCATAGGGGAGCTGGAGAATCATGATTCTTGTTTATGGGAGGTCCGTAATCCCTCATTTGATCATGAGGGAACTGGAATCCAGATATGCTCTCGTAGTCCAGTTTTGCAGAGTCATAAGCAAGGATTTTCATTTGAGGGTACAGCTGCAAGAGGAGTTTGTATGCAACTCCACAAAATGGAAGATTCCTCAGAAGGAAATGAAAAAGATGTAACTCTAAGACACACACAGAATACACCAAATGATTGGTCTGACAGTGGCCCAGAAATGCAGCAACTGCACTTCGATTGATTTGCTGGGCAGAAATGGGACTCAGAGGTGAGAAAAAGAGTCAATAAATTACGATGACAATGAACAGTCGTTTGATGAAGATTTTAGACAGCTCAAAATAGATGCTTCTGATTTTCAAACACGTGATATTTTTCTATCTGACATACTTGGCACCTGCCACATCCACATTCTTGTGGGTGGGAAAGATCACCAACTTTGCTGTGAAGATGGAGGCAGCAGTAATTGTTGCCATTGTTTTCTCATTAAATTGGTGAATTGTGGGATGTATCAATAGGTTTGTTTGCATGTATGTACATTATTAATTTATTAGGTCTTGATGTTCATTGGTTGCACAAGAGGAGCAAAAGGGATGGGAGTTTTCCCCACTCACCAAATATTGGATGCAGAATATCAGAGAAAATGAATATTCTGTTCCTGAAGCTTTGCCAACATGTATGGTTGGTCAAATTGATGGTATGTGCAACTTAAAATTATTTTCTCAATACTAA

Ace file of the UniGene sp_v3.0_unigene7865

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAC domain containing protein 28 [Arabidopsis thaliana] gb\|AAF06052.1\|AC009513_8 Contains similarity to gb\|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb\|AEE34440.1\| NAC domain containing protein 28 [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	NAC domain protein, IPR003441	-	-	-

Source	Gene names
Sma3	AT4g10350; AT4g17980; AT4g35580; AT4g36160; AT5G09330; At1g12260; At1g32510; At1g32870; At1g33060; At1g33280; At1g34180; At1g34190; At1g54330; At1g69490; At1g71930; At1g76420; At2g18060; At2g24430; At3g03200; At3g10480; At3g10490; At3g17730; At3g49530; At

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription coactivator activity	GO:0003713	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	meristem initiation	GO:0010014	Biological Process	-
Sma3	xylem development	GO:0010089	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	defense response to virus	GO:0051607	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	Peptidase M20	IPR002933	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3		IPR015706	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G65910.1	anac028, NAC028 NAC domain containing protein 28 chr1:24520933-24524108 REVERSE LENGTH=631	67%
RefSeq	Arabidopsis thaliana	NP_176766.1	NAC domain containing protein 28 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002327567.1	NAC domain protein, IPR003441 [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLW8

Fln msg: Overlapping hits, possible frame ERROR between 701 and 695, Unexpected STOP codon at 3' end. Distance to subject end: 162 aas, your sequence is shorter than subject: 467 - 782

Fln protein: MGTLALPPGFRFHPTDEELISCYLKGKLNHGLKEAEIEVISEVDLYRNEPWDLPEKSFLPSGDMEWYFFSPRDRKYPNGSRTNRATEAGYWKATGRDRKVYSRANTVGxxxxLVFYRGRAPQGERTDWVMHEYRLEENGCQAVPCLQNAFVLCRVFKKSGLGAKSGEQYTAPLEKGDLSPTKKNPSPGCSGDIEVQSVDPSKPVEGIDANLHLPSKISSKILIDTTGDSAPLKKWLDILLDDTSSNSSSVAADEDTIHTQVDAMPDTPRMQCESACLPSVET*APKNSS*YKLSSVHSSKWTFGCIF*RRKNARGNVVCGLTGLY*F*SISYFPWR*LC*YFERRLYKSQESNTFHRGAGES*FLFMGGP*SLI*S*GNWNPDMLS*SSFAES*ARIFI*GYSCKRSLYATPQNGRFLRRK*KRCNSKTHTEYTK*LV*QWPRNAATALRLICWAEMGLRGEKKSQ*

Protein Length: 468

Fln nts: ATGGGGAAGTATCCGTTATTTGACGGGAGAGCCACGACAGTGATCAATCTATCCAACCCAAATACGCACCCTGTTACTGTTCCCAGTAATCACCGAAGAGTGACACGTGTGCGCAAAAATATCTGGCCCAATTTTCTTTGGGTTTTTATTCTGCAAATATGGACGGCCTACATAGTATGTCGGTTGGGCTTGGCGGAGAGATACAAATAAGAGGTGGGCGGAGGCATTTATCAGCCACCAACACAGAAAGACGGCAGATAAATTATCAAGAGCGAAAAAAAGGGAGAAGGGAGGCGAGTGAGTGGAAATTAGTTTAGCTTGTTAGGCTTAAGAGGTGGTAGAGGGGAATCGACACCCCCTCTTTGCCC_-_ATGGGAACATTAGCGTTACCCCCAGGTTTCAGGTTCCATCCCACTGACGAAGAACTTATATCCTGCTATCTCAAGGGCAAACTCAATCATGGCCTTAAAGAAGCAGAGATCGAGGTTATTAGCGAGGTCGACCTTTACAGAAACGAGCCCTGGGATTTGCCTGAGAAATCCTTCCTGCCCAGCGGTGATATGGAGTGGTATTTCTTTAGTCCTCGTGACAGGAAGTATCCGAATGGTTCACGCACTAATAGGGCTACTGAAGCTGGGTATTGGAAAGCCACAGGAAGGGATCGTAAAGTTTACTCTCGAGCAAACACAGTAGGAxxxxxxxxxxxxTTAGTTTTCTATAGAGGCCGGGCTCCACAAGGTGAACGAACTGATTGGGTAATGCATGAATATCGTCTTGAGGAAAATGGATGTCAGGCAGTGCCTTGTTTGCAGAATGCTTTTGTCTTATGTCGTGTTTTCAAGAAGAGTGGACTTGGTGCAAAAAGTGGAGAACAGTACACAGCACCACTTGAGAAGGGTGATTTATCTCCTACAAAGAAAAATCCCTCCCCTGGTTGCTCTGGTGACATTGAAGTGCAATCAGTAGATCCATCAAAGCCAGTGGAGGGGATTGATGCAAATTTACATTTACCATCAAAAATATCATCGAAGATTTTAATTGATACAACTGGAGATAGTGCGCCACTTAAGAAATGGTTAGACATATTGCTGGATGACACTAGTTCAAACTCTTCAAGTGTAGCAGCTGACGAGGACACAATTCACACACAGGTTGATGCTATGCCAGACACTCCAAGAATGCAATGTGAATCTGCATGTCTTCCATCCGTCGAAACGTGAGCTCCAAAAAATTCCAGTTAATACAAGCTTTCCTCAGTACACAGTTCCAAATGGACGTTTGGATGCATATTTTGAAGAAGAAAGAATGCTAGAGGAAATGTTGTCTGTGGGCTCACAGGACTATACTAATTCTAAAGCATATCATACTTCCCTTGGAGATAGCTGTGCTGATATTTTGAACGGAGGTTATATAAAAGTCAAGAATCTAACACCTTCCATAGGGGAGCTGGAGAATCATGATTCTTGTTTATGGGAGGTCCGTAATCCCTCATTTGATCATGAGGGAACTGGAATCCAGATATGCTCTCGTAGTCCAGTTTTGCAGAGTCATAAGCAAGGATTTTCATTTGAGGGTACAGCTGCAAGAGGAGTTTGTATGCAACTCCACAAAATGGAAGATTCCTCAGAAGGAAATGAAAAAGATGTAACTCTAAGACACACACAGAATACACCAAATGATTGGTCTGACAGTGGCCCAGAAATGCAGCAACTGCACTTCGATTGATTTGCTGGGCAGAAATGGGACTCAGAGGTGAGAAAAAGAGTCAATAAATTACGATGACAATGAACAGTCGTTTGATGAAGATTTTAGACAGCTCAAAATAGATGCTTCTGATTTTCAAACACGTGATATTTTTCTATCTGACATACTTGGCACCTGCCACATCCACATTCTTGTGGGTGGGAAAGATCACCAACTTTGCTGTGAAGATGGAGGCAGCAGTAATTGTTGCCATTGTTTTCTCATTAAATTGGTGAATTGTGGGATGTATCAATAGGTTTGTTTGCATGTATGTACATTATTAATTTATTAGGTCTTGATGTTCATTGGTTGCACAAGAGGAGCAAAAGGGATGGGAGTTTTCCCCACTCACCAAATATTGGATGCAGAATATCAGAGAAAATGAATATTCTGTTCCTGAAGCTTTGCCAACATGTATGGTTGGTCAAATTGATGGTATGTGCAACTTAAAATTATTTTCTCAATACTAA

Fln Alignment:

Contig7865___MGTLALPPGFRFHPTDEELISCYLKGKLNHGLKEAEIEVISEVDLYRNEPWDLPEKSFLPSGDMEWYFFSPRDRKYPNGSRTNRATEAGYWKATGRDRKVYSRANTVGIxxTLVFYRGRAPQGERTDWVMHEYRLEENGCQAVPCLQNAFVLCRVFKKSGLGAKSGEQYTAPLEKGDLSPTKKNPSPGCSGDIEVQSVDPSKPVEGIDANLHLPSKISSKILIDTTGDSAPLKKWLDILLDDTSSNSSSVAADEDTIHTQVDAMPDTPRMQCESACLPSVET*APK
B8LLW8______________MGTFALPPGFRFHPTDEELISCYLKGKLNHGLKAAELEVISEVDLYKLEPWDLPEKSFLPSTDMEWYFFSPRDRKYPNGSRTNRATEAGYWKATGRDRKIYSRASTIGIxxTLVFYRGRAPQGERTDWVMHEYRLEENESEAGPCLQNAFVLCRVFKKSGLGEKSGEQYTTQVEKGDLSLIKKNLSPGYFGDIEVHSEEQSKPVEGIDANSHLPSKISSKILNDTTGDSAPLNKWLDILLDDTNSNSSCVALDEDTIHTQVDAMPDTPRMQCDSACLPFDESEFPQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1953	14			85	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain