SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7849

Length: 2132 nt

UniGene Fasta

>sp_v3.0_unigene7849
AAAAAATCACATTCCGTTCAAGCGAACGCATCACCATAAATCATTCAAATAATTTCATATTCAATGGGTGAAGTGCAGTGGAAGTCGAAGGCCCACGGAGGATTGCTCTCGCGGTTGCGGTTGCGGGTCCAATCCAATGGGGGATGCTCCCATTCTGCGGCGTTCCTGCAGAAGGGCGGGCATCGCTGTGGATGTGGATGTAGACGAAGGTGGTGTCGCCGCGCAAATCCACCAGAGGAGAGCTCATGCTGCTTGCACACCGGTATCCGTCAAGGGGAAGTTGATCAAGAGTCCCAAACCGCAGAGTTACAAAGCTCTAGTAAAATCCAAGGAGATTCAGACTGACAGTGTTGCAGATATAGAAGATTGTTTGAGTGGGGTCACAGATTTTAGAGACGAAGAGGCCTCCGCTATCTCAAAATGCCTCATTCAGTGGTACAATGGAAACCATCGCGTTTTGCCTTGGAGGTCCAAACAAGGTGGCGAGGAGGGGGATGAACAGAGCAGGGCATATGCCGTGTGGGTATCGGAGGTAATGCTTCAGCAAACAAGGGTGGCTACTGTTGTCAGCTATTACAATCGCTGGATGGACAGATGGCCCAATCTTCATCATCTTGCTCAGGCTTCTCAAGAGGAGGTTAATGACATTTGGGCAGGGCTGGGTTACTACAGGCGAGCCCGTTATCTGTTAGAGGGAGCAAAAAAGATTGTAGAAAAGCAGGGAGGAGTATTTCCGCATACTCTGGAAAATCTCAAAAATATTCCAGGGATTGGTGATTATACAGCTGGGGCTATTGCTTCTATTGCCTTTAAGCAGGCTGTGCCTGTGGTCGATGGTAACGTGGGTCGAGTGCTTTGCAGGTTGAAAGCTATATCTGCAAATCCTAAATTGTCTACTACTATCAAGCGACTTTGGGAGTTGGCAGGTCAACTTGTTGATCCAAAGGCACCAGGTGACTTCAACCAAGCACTTATGGAGCTCGGTGCTACCATTTGTACCCCAACGAGTCCTGCTTGTTCTTCATGTCCAGTTGCAGAACACTGTAATGCACTTGCTATTGTTAGAAGCTATGATTCAAAGAATAAGCATGCCATGCAGTCTCTGTCCACAGTGTACAATACAGTAGAGGCTGTGACAGCTCCATCTGTTATTGATTACCCAATGAAAGTTTTGAAGCCAATGCCTAGGGAGGAGTTTGCAGCTGTTTGTGTGGTTGAAATGTCTCCAGAAAATGAAAGTGAAAACTTTCTATGTATAAACAGTGACAGAAATTCATTCCTTCTTGTGAGAAGACCCCAACAAGGGTTACTTGCAGGCCTTTGGGAGTTTCCCTCTGTCTTGCTTAGTGGATTGAATGTCAGCCTTGATGAACAAAAAGTGACCATGGATCGGTATCTGGAAATTTCATTAGGGATTCAACCTAGCCAAGGAACATATAAGGAAATTTTGCGAAAGTCAGTTGGGCAGTATATTCATGTATTTTCACACATTCGGCTTCACATGTACATTGAGTGGATGGTCTTGCATGCCCCAGATGGGCTTCATGGAATGCAAGAAAACGAAGATGAAAATGGCACAGTTGTAAAGTGGGTAGATAAGAAGGCCATTCACAGCATGGGCTTGACAAGTGGAGTAAGAAAGGTGTATAAGATGCTCCAAGAATATAAGAATAGGCAAGGAACTGGGAAATCTGTGAAGAAAATGAAAAAATAGTAGAAGCTTTATTCATTTAAGATTATTTGTAACTTAAGTGTCCACTTCCTACCAATTTATATGGGCTTTTTTTCTTGATCAGTTTCTAAAGTAAATGGCTGTGTTTAGTGTTCCAGAAGTGCTACTTTTATATTTTGCATGATCTGGATTCTGTATTATTTGTGTTGGATACGTACCTCTATGCAAGCAATGTTCTACTCAACAAATCCCAAGACAAATAGTACTATAGTACCAAATAGTGTGAGGCTGTATCTCCAATTATCTAGTCTCAGACGACGAATGTGCCCATATTAGATTATGAGAGCCGTTGCCTTATTACAACATTTTTCTTTTGGATATTAAAACAAACCGACATTATGTTATTTATAAAATATTGAACAAAGAGAAGCTATGCTTGTAGCTCTTTACCTGAAAAAAA

Ace file of the UniGene sp_v3.0_unigene7849

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	A/G-specific adenine glycosylase [Arabidopsis thaliana] gb\|AEE83174.1\| A/G-specific adenine glycosylase [Arabidopsis thaliana]	-	-	0.0	42%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	50%

Source	Gene names
Sma3	CHLREDRAFT_141355; GSVIVT00013338001; LOC_Os12g10850; LOC_Os12g10900; OSTLU_43811; Os12g0211400; OsI_37819; OsI_37821; OsJ_35579; OsJ_35582; PHYPADRAFT_167575; POPTRDRAFT_899233; RCOM_1211520; THAPSDRAFT_18104; VITISV_000904; VITISV_015579;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	DNA N-glycosylase activity	GO:0019104	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	base-excision repair	GO:0006284	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	Helix-hairpin-helix motif	IPR000445	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR001993	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Endonuclease III, iron-sulphur binding site	IPR004035	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	A/G-specific adenine glycosylase MutY, bacterial form	IPR005760	-	-
Sma3	Alpha/beta hydrolase fold-3	IPR013094	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002321221.1	predicted protein [Populus trichocarpa]	0.0	50%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9IAY3

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 17 aas, your sequence is longer than subject: 526 - 480

Fln protein: MGDAPILRRSCRRAGIAVDVDVDEGGVAAQIHQRRAHAACTPVSVKGKLIKSPKPQSYKALVKSKEIQTDSVADIEDCLSGVTDFRDEEASAISKCLIQWYNGNHRVLPWRSKQGGEEGDEQSRAYAVWVSEVMLQQTRVATVVSYYNRWMDRWPNLHHLAQASQEEVNDIWAGLGYYRRARYLLEGAKKIVEKQGGVFPHTLENLKNIPGIGDYTAGAIASIAFKQAVPVVDGNVGRVLCRLKAISANPKLSTTIKRLWELAGQLVDPKAPGDFNQALMELGATICTPTSPACSSCPVAEHCNALAIVRSYDSKNKHAMQSLSTVYNTVEAVTAPSVIDYPMKVLKPMPREEFAAVCVVEMSPENESENFLCINSDRNSFLLVRRPQQGLLAGLWEFPSVLLSGLNVSLDEQKVTMDRYLEISLGIQPSQGTYKEILRKSVGQYIHVFSHIRLHMYIEWMVLHAPDGLHGMQENEDENGTVVKWVDKKAIHSMGLTSGVRKVYKMLQEYKNRQGTGKSVKKMKK*

Protein Length: 527

Fln nts: AAAAAATCACATTCCGTTCAAGCGAACGCATCACCATAAATCATTCAAATAATTTCATATTCAATGGGTGAAGTGCAGTGGAAGTCGAAGGCCCACGGAGGATTGCTCTCGCGGTTGCGGTTGCGGGTCCAATCCA_-_ATGGGGGATGCTCCCATTCTGCGGCGTTCCTGCAGAAGGGCGGGCATCGCTGTGGATGTGGATGTAGACGAAGGTGGTGTCGCCGCGCAAATCCACCAGAGGAGAGCTCATGCTGCTTGCACACCGGTATCCGTCAAGGGGAAGTTGATCAAGAGTCCCAAACCGCAGAGTTACAAAGCTCTAGTAAAATCCAAGGAGATTCAGACTGACAGTGTTGCAGATATAGAAGATTGTTTGAGTGGGGTCACAGATTTTAGAGACGAAGAGGCCTCCGCTATCTCAAAATGCCTCATTCAGTGGTACAATGGAAACCATCGCGTTTTGCCTTGGAGGTCCAAACAAGGTGGCGAGGAGGGGGATGAACAGAGCAGGGCATATGCCGTGTGGGTATCGGAGGTAATGCTTCAGCAAACAAGGGTGGCTACTGTTGTCAGCTATTACAATCGCTGGATGGACAGATGGCCCAATCTTCATCATCTTGCTCAGGCTTCTCAAGAGGAGGTTAATGACATTTGGGCAGGGCTGGGTTACTACAGGCGAGCCCGTTATCTGTTAGAGGGAGCAAAAAAGATTGTAGAAAAGCAGGGAGGAGTATTTCCGCATACTCTGGAAAATCTCAAAAATATTCCAGGGATTGGTGATTATACAGCTGGGGCTATTGCTTCTATTGCCTTTAAGCAGGCTGTGCCTGTGGTCGATGGTAACGTGGGTCGAGTGCTTTGCAGGTTGAAAGCTATATCTGCAAATCCTAAATTGTCTACTACTATCAAGCGACTTTGGGAGTTGGCAGGTCAACTTGTTGATCCAAAGGCACCAGGTGACTTCAACCAAGCACTTATGGAGCTCGGTGCTACCATTTGTACCCCAACGAGTCCTGCTTGTTCTTCATGTCCAGTTGCAGAACACTGTAATGCACTTGCTATTGTTAGAAGCTATGATTCAAAGAATAAGCATGCCATGCAGTCTCTGTCCACAGTGTACAATACAGTAGAGGCTGTGACAGCTCCATCTGTTATTGATTACCCAATGAAAGTTTTGAAGCCAATGCCTAGGGAGGAGTTTGCAGCTGTTTGTGTGGTTGAAATGTCTCCAGAAAATGAAAGTGAAAACTTTCTATGTATAAACAGTGACAGAAATTCATTCCTTCTTGTGAGAAGACCCCAACAAGGGTTACTTGCAGGCCTTTGGGAGTTTCCCTCTGTCTTGCTTAGTGGATTGAATGTCAGCCTTGATGAACAAAAAGTGACCATGGATCGGTATCTGGAAATTTCATTAGGGATTCAACCTAGCCAAGGAACATATAAGGAAATTTTGCGAAAGTCAGTTGGGCAGTATATTCATGTATTTTCACACATTCGGCTTCACATGTACATTGAGTGGATGGTCTTGCATGCCCCAGATGGGCTTCATGGAATGCAAGAAAACGAAGATGAAAATGGCACAGTTGTAAAGTGGGTAGATAAGAAGGCCATTCACAGCATGGGCTTGACAAGTGGAGTAAGAAAGGTGTATAAGATGCTCCAAGAATATAAGAATAGGCAAGGAACTGGGAAATCTGTGAAGAAAATGAAAAAATAG___TAGAAGCTTTATTCATTTAAGATTATTTGTAACTTAAGTGTCCACTTCCTACCAATTTATATGGGCTTTTTTTCTTGATCAGTTTCTAAAGTAAATGGCTGTGTTTAGTGTTCCAGAAGTGCTACTTTTATATTTTGCATGATCTGGATTCTGTATTATTTGTGTTGGATACGTACCTCTATGCAAGCAATGTTCTACTCAACAAATCCCAAGACAAATAGTACTATAGTACCAAATAGTGTGAGGCTGTATCTCCAATTATCTAGTCTCAGACGACGAATGTGCCCATATTAGATTATGAGAGCCGTTGCCTTATTACAACATTTTTCTTTTGGATATTAAAACAAACCGACATTATGTTATTTATAAAATATTGAACAAAGAGAAGCTATGCTTGTAGCTCTTTACCTGAAAAAAA

Fln Alignment:

Contig7849___KSPKPQSYKALVKSKEIQTDS-----VADIEDCLSGVTDFRDEEASAISKCLIQWYNGNHRVLPWRS---------KQGGEEGDEQSRAYAVWVSEVMLQQTRVATVVSYYNRWMDRWPNLHHLAQASQEEVNDIWAGLGYYRRARYLLEGAKKIVEKQGGVFPHTLENLKNIPGIGDYTAGAIASIAFKQAVPVVDGNVGRVLCRLKAISANPKLSTTIKRLWELAGQLVDPKAPGDFNQALMELGATICTPTSPACSSCPVAEHCNALAIVRSYDSKNKHAMQSLSTVYNTVEAVTAPSVIDYPMKVLKPMPREEFAAVCVVEMSPENESENFLCINSDRNS--FLLVRRPQQGLLAGLWEFPSVLLSGLNVSLDEQKVTMDRYLEISLGIQPSQGTYKEILRKSVGQYIHVFSHIRLHMYIEWMVLHAPDGLHGMQENEDENGTVVKWVDKKAIHSMGLTSGVRKV
B9IAY3______________KPSKRKRNAAIAKPKEQRQHSSKKQVVADIEDL------FSDKETQKIRASLLEWYDHNQRDLPWRRITQTKETPFKEEEEEEEEERRAYGVWVSEVMLQQTRVQTVIDYYNRWMLKWPTLHHLAQASLEEVNEMWAGLGYYRRARFLLEGAKMIVAGGDG-FPKIVSSLRKVPGIGDYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDKVTVKKFWKLAAQLVDPHRPGDFNQSLMELGATLCTPVNPSCSSCPVSGQCRALTI----SKLDKLVL-----------------ITDYPAKSIKLKQRHEFSAVCAVEITGRQD-----LIEGDQSSSVFLLVKRPDEGLLAGLWEFPSVML-GKEADMTRRRKEMNRFLKKSFRLDP-QKTCSVLLREDIGEFIHIFTHIRLKVYVELLIVHLKGDMSDLFSKQSRENMTWKCVDREALSSLGLTSGVRKV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
890	85		14		0.993533
1571	88		11		0.923564
1652		11	88		0.923564
1655			88	11	0.923564
1684		85		14	0.993533
1713			14	85	0.993533
1714	85		14		0.993533
1962		91		8	0.999807
2093	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain