SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7845

Length: 1627 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7845

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	electron transport SCO1/SenC family protein [Arabidopsis thaliana] gb\|AAM65284.1\| unknown [Arabidopsis thaliana] gb\|ABD19681.1\| At4g39740 [Arabidopsis thaliana] gb\|AEE87111.1\| electron transport SCO1/SenC family protein [Arabidopsis thaliana]	-	-	1.0e-38	42%
FL-Next	sp=Protein SCO1 homolog 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%

Source	Gene names
Sma3	AT4g39740; B1168F12.6; GSVIVT00004918001; GSVIVT00010919001; Os02g0159700; Os09g0370200; OsI_31110; OsJ_29115; POPTRDRAFT_217548; POPTRDRAFT_715909;

Source	GOs	Term	Type	e value	Identity
Sma3	cell redox homeostasis	GO:0045454	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Copper chaperone SCO1/SenC	IPR003782	-	-
Sma3		IPR012335	-	-
Sma3		IPR017936	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002306313.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8LAL0

Fln msg:

Fln protein: MGRFLLSRIVMVSAKRFYSRYHFKGFSNLHSHSLSTSQSLLGYGHTPNPIGATHRYRNCLSLPVLYLNSHVFKYTTSSNSKKNGTETNRHLLQNGLTSRPLAFRLGIVPTALLVLISAGLLLHYNDERRAIPKASQQGSANITSKPSIGGPFTLTDCDGKPITDREFLGDWTLIYFGYTSSPDTDPEELQKMAKVIDILEFHAKIMGLTGPVNAVRQVAQLYRVYFKKIDEEGSDYLIDCSHNMYLMDPNMDFVRMFGLEYNAEQLTDAIAYEIKKYSKLD*

Protein Length: 283

Fln nts: ATGGGGACCATCATTTTAAATCGTCGGTGCGAGTGGACAAACATATTTGTGCAGCACACGAACATTCAAAACCTGTTACGATTCTACGAATTTCACCCTTGTTTTAAAATCACCGGGGAGAGCGGGCAAAAGGATTGAAGAGCACGAGAGCTTTGCTTTCACAGCTGCAGTGGATGCGATGCAACAAATCCCATACACTTTTATTTCTAATGACATAAAACGCGTGCGCAAGGAATAATGGATTGAGTAATCAAACACATATAAGAC_-_ATGGGCAGATTTCTGCTGAGTAGAATTGTGATGGTATCAGCCAAACGTTTCTATTCTCGTTACCACTTCAAGGGCTTTTCCAACCTCCATTCCCACTCTTTATCCACCTCGCAAAGCCTCTTGGGATATGGACACACACCCAATCCCATCGGAGCAACGCATCGTTACAGGAACTGCTTAAGTTTACCGGTTTTGTATTTGAATAGTCATGTCTTCAAATATACAACATCATCAAATTCCAAAAAGAATGGAACTGAAACTAACCGTCACTTACTGCAGAATGGCTTGACATCAAGGCCATTGGCATTCAGGCTCGGCATTGTTCCAACAGCATTGTTGGTACTTATCAGTGCAGGCCTTCTGTTACACTACAATGATGAAAGGAGGGCTATACCTAAAGCCTCACAACAAGGTTCTGCAAATATTACCAGTAAACCTTCCATTGGAGGTCCTTTCACGCTAACAGATTGTGATGGGAAGCCTATTACAGATCGTGAATTTCTTGGGGATTGGACCTTGATATATTTTGGGTACACGTCCTCTCCTGATACTGATCCAGAGGAACTTCAAAAGATGGCCAAAGTCATTGATATCTTAGAATTTCATGCAAAAATAATGGGGTTGACTGGACCTGTAAATGCAGTAAGGCAGGTAGCCCAATTGTACCGTGTTTATTTCAAAAAAATTGATGAAGAAGGATCGGATTACCTTATTGACTGTTCACATAATATGTACTTGATGGATCCTAACATGGACTTTGTGAGAATGTTTGGGCTGGAGTATAATGCAGAGCAATTGACTGATGCTATAGCTTATGAAATTAAGAAATACTCTAAATTGGATTGA___CAGAATATAAGGGTACTTCATGGATCCTAACATGGAATTGAGTGATGCTATGGCTTATGAAGTCAAGAAACACTCTAAATGATTGTAAAACCATCTGGTTCAAAAATATAGGTTTTGGTCCAATTCAGAGTGAGGGTATCTGAATGCCGCTTTTAATACTGAGAGGCCTTCAGACTCATATTCGGAAGATGACAGCTTGTGAGTTCTTATCTGCCCAACGCAAAGGTTGTAGGAGTTGAGACGTCGATATTATGATTTTGAATATGAAAATTACCACAATAACGGTGGTAATAGGTTCAAGAAATCCCTTCCCTACATGGGATATGCATTTATTTTAAAATGCTGTGACCTGAATTTTTTAAACCCATTTTGAATATTCAACCATTATAAATTCAGATGATATATACATTGTTTACAACCAATGTAGCTTATTAATCAACAATATCCTGGACCAGTTGTATATTTCACTGTTGACTAATAAAATATTTCAATGGCTGATTTTGGCTCCCAAAAA

Fln Alignment:

Contig7845___HYNDERRAIPKASQQ-------GSANITSKPSIGGPFTLTDCDGKPITDREFLGDWTLIYFGYTSSPDTDPEELQKMAKVIDILE------------------------------FHAKIMGLTGPVNAVRQVAQLYRVYFKKIDEEGSDYLIDCSHNMYLMDPNMDFVRMFGLEYNAEQLTDAIAYEIKKYSK
Q8LAL0______________HYNDERRAVPRGQASSNSGCGCGSNTTVKGPIIGGPFTLVSTENKIVTENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKLESKHNEKILPVFVTLDPQRDTPSHLHAYLKEFDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGEDYLVDTSHNMYLINPKMEIVRCFGVEYNPDELSQELLKEVASVSQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
421	50		50		1.0
532	85		14		0.993533
606			11	88	0.923564
681		16	83		0.994512
682	16		83		0.994512
872			25	75	0.996473
1025	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain