SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7841

Length: 923 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7841

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Orf300 protein n=2 Tax=Beta vulgaris RepID=Q9MFC7_BETVU	-	-	1.0e-12	80%
FL-Next	sp=NADH-ubiquinone oxidoreductase chain 2; Beta vulgaris (Sugar beet). Mitochondrion.	-	-	0.0	80%

Source	Gene names
Sma3	NAD2; ND2; VITISV_004351; orf300;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	ATP synthesis coupled electron transport	GO:0042773	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
161	75	25			0.996473
269	12			87	0.992554
271		85		14	0.993533
272		85	14		0.993533
273	85			14	0.993533
316	14			85	0.993533
317	14			85	0.993533
318		85		14	0.993533
319	85		14		0.993533
421	80	20			0.995493
482		85		14	0.993533
485			14	85	0.993533
486	85		14		0.993533
576	33	66			1.0
617	14	71		14	0.984337
618	14	85			0.993533
630	12			87	0.992554
631	12		87		0.992554
632		87		12	0.992554
634	87			12	0.992554
681		14		85	0.999981
896			50	50	1.0
901		50		50	1.0
902		33		66	1.0
903	33	66			1.0
904		50	50		1.0
905		50		50	1.0
906		50		50	1.0
912	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain