SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7835

Length: 2319 nt

UniGene Fasta

>sp_v3.0_unigene7835
ATGGGGGACAGACTTTTTTGGGTTGTTGGAGCGATTCTTCTGTTTCGTCAGATTTCATTTCAAGGTCTGTAGCCACTGTAGCTAGCATCAAGTATTGTTCGCGCCATTCATATATTTTTGTTAAATTTCAAGGTATCCTGGCTGAAATTTAAGGCACCAAAGAGTTTTGATTTAAGGGTCTGAAATTTGAAGTATTCCTAATGGCTGCGGATCGGCCTGAGATAGTCTTCTTTGATTTGGAGACGACAATACCTCTTCGAGTGGGACAAAAATTTAAGGTACTAGAATTTGGTGCTATTCTGGTTTGTCCCCAAAAGCTCGTAGAGCTCAAAGAGCTCTGCACTTTTATCAGACCAGATGATCTCTCTCTGATTTCCGAACCAAGCATCAAATGTAACGGCATTACTCGCGAAGAAGTGGCCACTGCACCAAAATTTGAAGATGTTGCGGATGAAATTTACGATTTTATGAACGGCAGAGTATGGGCTGGGCACAATATTGTGAGGTTTGATTGCGTGCGTATTCGTGAGGCATTTGCTGAGATTGGACGGCCCGCCCCAGAGGCAAAGGGATTGATTGATTCCTTGCATTTGTTGCAGCAGAAGTTTGGGCGGCGAGCTGGTGATATGAAGATGGCTAGCTTGGCAAAATATTTTGGACTTGGAACTCAGAAGCACAGAAGCTTAGATGATGTCCGGCTGAATCTGGAAATCTTGAAATATTGTGCAACTGTATTGTTCTTAGAGTCAAATTTTCCCGATGTTTTATCAGTTGCCGTTTCATCTACGCCTGTTAAATCAGCGTTGTTGGATGCTTCCACAAGCAAAAGTTCTTCCACAAGCAAAAGTCGCAGGAAAGGAAAAACATCCATAGAAATTGTTTCTGAAGAGAAAGGTCAAAAGCCTCTTCAAAGAAAATCTAAAATGTCGCCTCTAAATAATGTAGTTGGAAGACTTTCAAATAATTCTGCCAAATCTGTAAATTCAGGGGCAGATAAAAGTCCTTTTGACCTCACTGAACTACGTGAAGTTTTGGAAGATGAAAACCATGATATCTTATCAGCTTCAGCTCAGTATTTTAAGGTAAAACAATCAGAATGCACTGAATCTGGAGATAACTTCGAACTTCATGAGGAATCCACTTTTGCCCCAAAGGTCTCAAAAGATAGAAGTCTTGGTATCTTACCAGATGGTTCTAATGTTATGTCAGTTTCAGTTCAGTGTTGTAAAGCAAAACAATCAGAATGTGCCAAATCTGAAATTTTTCTGGATACCCATCAGACATTTACATTTTCCACAGAAATTTCTGAAGATGAAGATCTTACTATCTTAACAGATCCTGCCTGTGTTGTCTCAGTTTCAGCTCAACGTTGTAAGGTAGAACAATCAGAATGCACTAAATCTCGAGATATTTTGGAACCTCGTGAGCTATCCACATTTTCCCCGAAAGTTTTAGAAGATGAAAATCATGGTATCTTATCAGGTTCTATTGTTGTTTCATTTTCACCTGATAAGCATTGTGAGGCAAAACAATCAGATTGTAAGGAATCTGAAGAATTTTTGGAACCCCATCAGATATCTACATCTTCACTGAGGACAATATATGAACCATCTCAATGGGGAACTCAAAAAATGACGTTGTTACATAAAGACATTCCATTCCGAATGCGCTCCAGCAACATGATTTTACGCTATGGGATAAGTAGGAAATTTTTTGACCCCACTGGCAAACCACGGTTATCACTTGTTGTGGAACCATCTTCAGAAATTTGCAACATTCTCAAGGATTGTGATGTCCTTGCACAGAAATCGTTTTCAAGCTTCAATGATAAGTCTGAATGGAGACCTTTGGTGAAATATGGCCTAGGAAATGCCATTCCTGCCGTTCGAATACATATTGCGACTGCAGGTTCTGGAGAGACGTCTACATATTCAACGGAATTGTATCGGAGAGATTCAAAGGGAACAACTCAAAGGCTTGCTTTTAAGACTGTGGACATTAATGAACTTGATGAACTGTTTGTTTACGGAATGCTAGTTGATGCAGATTATGACTTTGATATCTATGATTATCAGCAACATGCAGGGATCCGCCTTGTTGCCAGAAGACTGTCTGTGGTCTGTTAGTGAAATTGATTGATTAGACGTTATTCATAGCAATCAGCAAACATTGGTTTTACTTGGCCCAAGTGTATCAGAATCTCTAGCATTTGGACAAGAACCAATGTATATTGGGGTTTGTTTTACATGTTTGAAGTTTAATACATGAATGATATATAAATCTAATGGTTGAGGAGTGGTTCTCTGATTACGAATACAG

Ace file of the UniGene sp_v3.0_unigene7835

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	exonuclease family protein [Arabidopsis thaliana] dbj\|BAB11450.1\| exonuclease-like protein [Arabidopsis thaliana] gb\|AED91196.1\| exonuclease family protein [Arabidopsis thaliana]	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	71%
Sma3	Putative exonuclease	-	-	2.367e-11	-

Source	Gene names
Sma3	AT4g39810; At1g74390; At4g39810; At5g07710; F1M20.7; GSVIVT00016302001; GSVIVT00019456001; LOC_Os10g26720; LOC_Os10g26730; OSJNBa0060A14.20; OSJNBa0060A14.21; Os10g0407500; OsI_33530; OsI_33531; OsJ_16781; OsJ_31475; POPTRDRAFT_860490; POPTRDRAFT_870999;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Exonuclease	IPR006055	-	0.0	-
Sma3	Exonuclease, RNase T/DNA polymerase III	IPR013520	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G07710.1	Polynucleotidyl transferase, ribonuclease H-like superfamily protein chr5:2453310-2455357 FORWARD LENGTH=468	50%
RefSeq	Arabidopsis thaliana	NP_196388.1	exonuclease family protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002307108.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6GT62

Fln msg: your sequence is longer than subject: 642 - 497

Fln protein: MAADRPEIVFFDLETTIPLRVGQKFKVLEFGAILVCPQKLVELKELCTFIRPDDLSLISEPSIKCNGITREEVATAPKFEDVADEIYDFMNGRVWAGHNIVRFDCVRIREAFAEIGRPAPEAKGLIDSLHLLQQKFGRRAGDMKMASLAKYFGLGTQKHRSLDDVRLNLEILKYCATVLFLESNFPDVLSVAVSSTPVKSALLDASTSKSSSTSKSRRKGKTSIEIVSEEKGQKPLQRKSKMSPLNNVVGRLSNNSAKSVNSGADKSPFDLTELREVLEDENHDILSASAQYFKVKQSECTESGDNFELHEESTFAPKVSKDRSLGILPDGSNVMSVSVQCCKAKQSECAKSEIFLDTHQTFTFSTEISEDEDLTILTDPACVVSVSAQRCKVEQSECTKSRDILEPRELSTFSPKVLEDENHGILSGSIVVSFSPDKHCEAKQSDCKESEEFLEPHQISTSSLRTIYEPSQWGTQKMTLLHKDIPFRMRSSNMILRYGISRKFFDPTGKPRLSLVVEPSSEICNILKDCDVLAQKSFSSFNDKSEWRPLVKYGLGNAIPAVRIHIATAGSGETSTYSTELYRRDSKGTTQRLAFKTVDINELDELFVYGMLVDADYDFDIYDYQQHAGIRLVARRLSVVC*

Protein Length: 643

Fln nts: ATGGGGGACAGACTTTTTTGGGTTGTTGGAGCGATTCTTCTGTTTCGTCAGATTTCATTTCAAGGTCTGTAGCCACTGTAGCTAGCATCAAGTATTGTTCGCGCCATTCATATATTTTTGTTAAATTTCAAGGTATCCTGGCTGAAATTTAAGGCACCAAAGAGTTTTGATTTAAGGGTCTGAAATTTGAAGTATTCCTA_-_ATGGCTGCGGATCGGCCTGAGATAGTCTTCTTTGATTTGGAGACGACAATACCTCTTCGAGTGGGACAAAAATTTAAGGTACTAGAATTTGGTGCTATTCTGGTTTGTCCCCAAAAGCTCGTAGAGCTCAAAGAGCTCTGCACTTTTATCAGACCAGATGATCTCTCTCTGATTTCCGAACCAAGCATCAAATGTAACGGCATTACTCGCGAAGAAGTGGCCACTGCACCAAAATTTGAAGATGTTGCGGATGAAATTTACGATTTTATGAACGGCAGAGTATGGGCTGGGCACAATATTGTGAGGTTTGATTGCGTGCGTATTCGTGAGGCATTTGCTGAGATTGGACGGCCCGCCCCAGAGGCAAAGGGATTGATTGATTCCTTGCATTTGTTGCAGCAGAAGTTTGGGCGGCGAGCTGGTGATATGAAGATGGCTAGCTTGGCAAAATATTTTGGACTTGGAACTCAGAAGCACAGAAGCTTAGATGATGTCCGGCTGAATCTGGAAATCTTGAAATATTGTGCAACTGTATTGTTCTTAGAGTCAAATTTTCCCGATGTTTTATCAGTTGCCGTTTCATCTACGCCTGTTAAATCAGCGTTGTTGGATGCTTCCACAAGCAAAAGTTCTTCCACAAGCAAAAGTCGCAGGAAAGGAAAAACATCCATAGAAATTGTTTCTGAAGAGAAAGGTCAAAAGCCTCTTCAAAGAAAATCTAAAATGTCGCCTCTAAATAATGTAGTTGGAAGACTTTCAAATAATTCTGCCAAATCTGTAAATTCAGGGGCAGATAAAAGTCCTTTTGACCTCACTGAACTACGTGAAGTTTTGGAAGATGAAAACCATGATATCTTATCAGCTTCAGCTCAGTATTTTAAGGTAAAACAATCAGAATGCACTGAATCTGGAGATAACTTCGAACTTCATGAGGAATCCACTTTTGCCCCAAAGGTCTCAAAAGATAGAAGTCTTGGTATCTTACCAGATGGTTCTAATGTTATGTCAGTTTCAGTTCAGTGTTGTAAAGCAAAACAATCAGAATGTGCCAAATCTGAAATTTTTCTGGATACCCATCAGACATTTACATTTTCCACAGAAATTTCTGAAGATGAAGATCTTACTATCTTAACAGATCCTGCCTGTGTTGTCTCAGTTTCAGCTCAACGTTGTAAGGTAGAACAATCAGAATGCACTAAATCTCGAGATATTTTGGAACCTCGTGAGCTATCCACATTTTCCCCGAAAGTTTTAGAAGATGAAAATCATGGTATCTTATCAGGTTCTATTGTTGTTTCATTTTCACCTGATAAGCATTGTGAGGCAAAACAATCAGATTGTAAGGAATCTGAAGAATTTTTGGAACCCCATCAGATATCTACATCTTCACTGAGGACAATATATGAACCATCTCAATGGGGAACTCAAAAAATGACGTTGTTACATAAAGACATTCCATTCCGAATGCGCTCCAGCAACATGATTTTACGCTATGGGATAAGTAGGAAATTTTTTGACCCCACTGGCAAACCACGGTTATCACTTGTTGTGGAACCATCTTCAGAAATTTGCAACATTCTCAAGGATTGTGATGTCCTTGCACAGAAATCGTTTTCAAGCTTCAATGATAAGTCTGAATGGAGACCTTTGGTGAAATATGGCCTAGGAAATGCCATTCCTGCCGTTCGAATACATATTGCGACTGCAGGTTCTGGAGAGACGTCTACATATTCAACGGAATTGTATCGGAGAGATTCAAAGGGAACAACTCAAAGGCTTGCTTTTAAGACTGTGGACATTAATGAACTTGATGAACTGTTTGTTTACGGAATGCTAGTTGATGCAGATTATGACTTTGATATCTATGATTATCAGCAACATGCAGGGATCCGCCTTGTTGCCAGAAGACTGTCTGTGGTCTGTTAG___TGAAATTGATTGATTAGACGTTATTCATAGCAATCAGCAAACATTGGTTTTACTTGGCCCAAGTGTATCAGAATCTCTAGCATTTGGACAAGAACCAATGTATATTGGGGTTTGTTTTACATGTTTGAAGTTTAATACATGAATGATATATAAATCTAATGGTTGAGGAGTGGTTCTCTGATTACGAATACAG

Fln Alignment:

Contig7835___DRPEIVFFDLETTIPLRVGQKFKVLEFGAILVCPQKLVELKELCTFIRPDDLSLISEPSIKCNGITREEVATAPKFEDVADEIYDFMNGRVWAGHNIVRFDCVRIREAFAEIGRPAPEAKGLIDSLHLLQQKFGRRAGDMKMASLAKYFGLGTQKHRSLDDVRLNLEILKYCATVLFLESNFPDVLS
F6GT62______________ERSEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRCNGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGSIDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFT

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
412	83			16	0.994512
441	16		83		0.994512
449			66	33	1.0
581		25		75	0.996473
758		66		33	0.997452
900	57		42		1.0
969		28		71	1.0
1071	25			75	0.996473
1074			75	25	0.996473
1516	33		66		0.997452
1523	33		66		0.997452
2029		86		13	0.999973
2156			7	92	0.999532
2248	10	90			0.90298
2250	10			90	0.90298
2251	10		90		0.90298
2252	10			90	0.90298
2253	10			90	0.90298
2281	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain