SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7822

Length: 2985 nt

UniGene Fasta

>sp_v3.0_unigene7822
ATGGGATGCAAATGAACGGAGTAAAAATATGGGGGACTTAGTAGTGTCTGCCAGGCGGTTTCTTGCAGACCCCAAGAGCTGGAAAACGCCATCGCGGCCCCGCAGAGCAGATATACAGCTGTTGTGCCTGTGACTGCAAAGTGGTTTTGATTTCCTGCCATGGTGGATCTTCACGGGCGAAGGTAAATGCGATTTTTGTTGAAGTTGTCACGACTGAAATCATTGGAATTTTTTCAATCGGAGTCCTTTTCCCTACATGGACAGTTCCGGGTAGCTGTCCTGGCACTGGTCCAAGCGGCCCAGGTTCGAATTCGTTGACACTGAGCTGTTGCGGCCAGATAGGTGAATTCCAGAGAGAGGTTTTGTCAATGGGTTAGACCGTGCAGAGGTCGAGGTCTTTAGGAATTTGCGTGGACGCTATTAGTGTCTCGCATTTCGCCAAGACAGAGAGAGGGGGAGACAGAGATGAGCTGCTTTTCATGTTATGGGACCTTTAAAGGGGAGAGGGTTTTGAAGAGGTTGGAGGGTAGCAAAGATGGTGCAAATCCGGCTTCATCTGCGCAGCAAATCTCCCGGGTGCCTTCAGATAAGGCGAAATCCAAGTCTTCGTGTGACAGCAAAAGGGAGGCTCCCAATGATGGAACAGGACATATTGCCGCTCAGACATTCCCTTTCCGTGAGTTGGCTGCAGCAACAAAGAATTTCAGACCTGAGTGCTTATTAGGTGAAGGTGGTTTTGGAAGAGTCTACAAGGGAAGGCTTGATAGCACTGGACAGGTTGTGGCTGTAAAGCAACTTGACAGAAATGGCTTGCAAGGTAACCGGGAATTCCTTGTGGAAGTTCTGATGCTTAGTCTGCTTCATCATCCTAATCTAGTGAACCTTATTGGATACTGTGCTGATGGGGATCAAAGGCTTTTAGTATATGAATACATGCCACTGGGATCACTGGAAGACCATCTGCATGATCTTTCACCAGATAAAGAGCCGTTGGATTGGAACAGGAGAATGAAAATAGCGGCAGGTGCTGCAAAAGGGTTGGAATACTTGCATGATAAAGCCAATCCACCAGTTATATACAGAGACTTGAAATCCTCTAATATTTTGTTGGACGAAGATTTTCATCCTAAATTATCAGATTTTGGACTGGCCAAACTTGGACCTGTTGGAGATAAGACCCACGTTTCTACACGGGTGATGGGAACTTATGGATATTGTGCACCAGAGTACGCTATGACTGGTCAGTTGACTCTAAAGTCAGATGTATACAGTTTTGGGGTTGTTTTATTGGAGATAATCACAGGAAGGAAAGCTATTGACAATAACAGGGCAGCAGGGGAGCACAATCTTGTTACTTGGGCACGCCCGTTATTTAAAGACCGCAGGAAGTTTTCACAGATGGCTGATCCATTGCTTCAAGGCCGCTATCCTATGAGAGGTTTGTATCAAGCATTGGCTGTGGCAGCAATGTGCCTCCAGGAGGAAGCTGCTACCCGCCCCCTGATTGCTGATGTTGTAACAGCTCTTAGCTATCTTGCATCTCAGACATATGATCCTGGGGTGCATCCTGTTCAGAGTTCTCGCATTGCTCCTCCCACTCCTTCCCGTGACAAAAAGGAGGAGAAGAAGCCGAAGCCGAGTGACAGATCTGACAAAGAAAGAGAAAAAGATAAAACAATTAAGCGTGGTGATGCTAGGAATCTGATCATGCATGCGCAGGCTTCTCCTGATCAGAGGGTGAAGGATGCTTGGAAGAGGACTACCAATGGCTCGGTTGATGCTATTCACTCTCAAGAAGGCCATGATGGAGACTTCGGAGAGTCTGGAAGATCTGAAGGATTGACAGATAGCCCTGGAAGTGCTGGGAGAACTTCCAGAACTTCTGTCGACCGTGAGCGAGCAGTTGCTGAAGCTAAAATGTGGGGTGAGAATTGGAGAGAAAAGAAGAGAGGAAATGCGCATGATGGTATTGATGGTTTTCAATGATGCCTTGGCTGTGGTAAATAAATTATTACCATTTTACTGTAAAAATTTCATTTGATCAGGAGTACTCGAGGTTCCTTTGTATTCCATGCATACTAGAAAACAAGATCATTTTGTAGGTTGGGAAGAAGTTAGAGGTTCCTTTGTATTCCATGCATACTAGAAAACAAGATCATTTTGTAGGTTGGGAAGAAGTTAGAGGTTCCTTCGTATTCCATGCATATTAGAAAACAAGATCATTTTGTAGGTTGGGAAGAAATTAGAGAGTGCAAAAGGAACCGAGCTTTTCTGGATTTCAATTGAGCATTGCCAGTTTCTGAAGCAAGGTTTTGTGGCCCTTCCAGTGCTATATAGAATTAATTGATGCTCGGCTTGCATTCTTTATTATTCGATGATAGGTTTGTACACAGTTTGTACTGGTCCATGACCTGTCTATATGAGGCAGCTAATTTATGCCCCAGGTGAGTGGGGGAGAGGCATTTCTTTCGAGAGTAAAATTCAAAGGTTTGAGTTTGTTGTCCTTTCCAGCACCCGTTTGCTTGAGGTAGGTGCTCTCTCTGTATAGGGGGGCCATTCTTGAGAGCTGAATTTTGGTGTAAGCTTTTGTTATACCTCGAGATGTGTTAGCAAACTCAACCATTTTCAGTGAAATATTCCCGTCTATTGTTCTTATCATGATTGCATTTGATCTGCGTTGCATTACTTTTGGTCTTTCCTTACCTCACACGCATTATCGAGGTTACGATGCATCTATCTAATAAATGTGGTATAATGGTATCGGATTCCTGCTTTGCATTACTTATGGCCTTCCCTTACCTCACGCATTATCGAGGCTGCGATGCATATATCTAGTAAATGTGGTTTAATGGTGTCTGGTTCATCATTTTTTCTCACCAGAGAGGATTCTCAGGTGACTTTAGAAGGTTTTGTCTAATTATTCTACATTTTGGGTATTTTTAGCTAGAATAAGGTGATACAAATTGTGTGTGAGATTGTCATCTT

Ace file of the UniGene sp_v3.0_unigene7822

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor serine-threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RT11_RICCO	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Receptor serine-threonine protein kinase, putative	-	-	8.898e-32	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.708e-23	-

Source	Gene names
Sma3	673I14.2; ABC1041; APK1B; APK2a; APK2b; AT4g13190; At1g07870; At1g14370; At1g14370/F14L17.14; At1g20650; At1g76370; At2g02800; At2g02800/T20F6.6; At2g28590; At2g28930; At3g01300; At3g02810; At3g07070; At3g20530; At3g24790; At3g26940; At4g13190; At5g01020;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G18610.1	Protein kinase superfamily protein chr5:6192736-6195371 FORWARD LENGTH=513	70%
RefSeq	Arabidopsis thaliana	NP_197362.1	protein kinase family protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002312759.1	serine/threonine protein kinase PBS1, partial [Populus trichocarpa]	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAA3

Fln msg: your sequence is longer than subject: 507 - 458

Fln protein: MSCFSCYGTFKGERVLKRLEGSKDGANPASSAQQISRVPSDKAKSKSSCDSKREAPNDGTGHIAAQTFPFRELAAATKNFRPECLLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLSPDKEPLDWNRRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEDFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNNRAAGEHNLVTWARPLFKDRRKFSQMADPLLQGRYPMRGLYQALAVAAMCLQEEAATRPLIADVVTALSYLASQTYDPGVHPVQSSRIAPPTPSRDKKEEKKPKPSDRSDKEREKDKTIKRGDARNLIMHAQASPDQRVKDAWKRTTNGSVDAIHSQEGHDGDFGESGRSEGLTDSPGSAGRTSRTSVDRERAVAEAKMWGENWREKKRGNAHDGIDGFQ*

Protein Length: 508

Fln nts: ATGGGATGCAAATGAACGGAGTAAAAATATGGGGGACTTAGTAGTGTCTGCCAGGCGGTTTCTTGCAGACCCCAAGAGCTGGAAAACGCCATCGCGGCCCCGCAGAGCAGATATACAGCTGTTGTGCCTGTGACTGCAAAGTGGTTTTGATTTCCTGCCATGGTGGATCTTCACGGGCGAAGGTAAATGCGATTTTTGTTGAAGTTGTCACGACTGAAATCATTGGAATTTTTTCAATCGGAGTCCTTTTCCCTACATGGACAGTTCCGGGTAGCTGTCCTGGCACTGGTCCAAGCGGCCCAGGTTCGAATTCGTTGACACTGAGCTGTTGCGGCCAGATAGGTGAATTCCAGAGAGAGGTTTTGTCAATGGGTTAGACCGTGCAGAGGTCGAGGTCTTTAGGAATTTGCGTGGACGCTATTAGTGTCTCGCATTTCGCCAAGACAGAGAGAGGGGGAGACAGAG_-_ATGAGCTGCTTTTCATGTTATGGGACCTTTAAAGGGGAGAGGGTTTTGAAGAGGTTGGAGGGTAGCAAAGATGGTGCAAATCCGGCTTCATCTGCGCAGCAAATCTCCCGGGTGCCTTCAGATAAGGCGAAATCCAAGTCTTCGTGTGACAGCAAAAGGGAGGCTCCCAATGATGGAACAGGACATATTGCCGCTCAGACATTCCCTTTCCGTGAGTTGGCTGCAGCAACAAAGAATTTCAGACCTGAGTGCTTATTAGGTGAAGGTGGTTTTGGAAGAGTCTACAAGGGAAGGCTTGATAGCACTGGACAGGTTGTGGCTGTAAAGCAACTTGACAGAAATGGCTTGCAAGGTAACCGGGAATTCCTTGTGGAAGTTCTGATGCTTAGTCTGCTTCATCATCCTAATCTAGTGAACCTTATTGGATACTGTGCTGATGGGGATCAAAGGCTTTTAGTATATGAATACATGCCACTGGGATCACTGGAAGACCATCTGCATGATCTTTCACCAGATAAAGAGCCGTTGGATTGGAACAGGAGAATGAAAATAGCGGCAGGTGCTGCAAAAGGGTTGGAATACTTGCATGATAAAGCCAATCCACCAGTTATATACAGAGACTTGAAATCCTCTAATATTTTGTTGGACGAAGATTTTCATCCTAAATTATCAGATTTTGGACTGGCCAAACTTGGACCTGTTGGAGATAAGACCCACGTTTCTACACGGGTGATGGGAACTTATGGATATTGTGCACCAGAGTACGCTATGACTGGTCAGTTGACTCTAAAGTCAGATGTATACAGTTTTGGGGTTGTTTTATTGGAGATAATCACAGGAAGGAAAGCTATTGACAATAACAGGGCAGCAGGGGAGCACAATCTTGTTACTTGGGCACGCCCGTTATTTAAAGACCGCAGGAAGTTTTCACAGATGGCTGATCCATTGCTTCAAGGCCGCTATCCTATGAGAGGTTTGTATCAAGCATTGGCTGTGGCAGCAATGTGCCTCCAGGAGGAAGCTGCTACCCGCCCCCTGATTGCTGATGTTGTAACAGCTCTTAGCTATCTTGCATCTCAGACATATGATCCTGGGGTGCATCCTGTTCAGAGTTCTCGCATTGCTCCTCCCACTCCTTCCCGTGACAAAAAGGAGGAGAAGAAGCCGAAGCCGAGTGACAGATCTGACAAAGAAAGAGAAAAAGATAAAACAATTAAGCGTGGTGATGCTAGGAATCTGATCATGCATGCGCAGGCTTCTCCTGATCAGAGGGTGAAGGATGCTTGGAAGAGGACTACCAATGGCTCGGTTGATGCTATTCACTCTCAAGAAGGCCATGATGGAGACTTCGGAGAGTCTGGAAGATCTGAAGGATTGACAGATAGCCCTGGAAGTGCTGGGAGAACTTCCAGAACTTCTGTCGACCGTGAGCGAGCAGTTGCTGAAGCTAAAATGTGGGGTGAGAATTGGAGAGAAAAGAAGAGAGGAAATGCGCATGATGGTATTGATGGTTTTCAATGA___TGCCTTGGCTGTGGTAAATAAATTATTACCATTTTACTGTAAAAATTTCATTTGATCAGGAGTACTCGAGGTTCCTTTGTATTCCATGCATACTAGAAAACAAGATCATTTTGTAGGTTGGGAAGAAGTTAGAGGTTCCTTTGTATTCCATGCATACTAGAAAACAAGATCATTTTGTAGGTTGGGAAGAAGTTAGAGGTTCCTTCGTATTCCATGCATATTAGAAAACAAGATCATTTTGTAGGTTGGGAAGAAATTAGAGAGTGCAAAAGGAACCGAGCTTTTCTGGATTTCAATTGAGCATTGCCAGTTTCTGAAGCAAGGTTTTGTGGCCCTTCCAGTGCTATATAGAATTAATTGATGCTCGGCTTGCATTCTTTATTATTCGATGATAGGTTTGTACACAGTTTGTACTGGTCCATGACCTGTCTATATGAGGCAGCTAATTTATGCCCCAGGTGAGTGGGGGAGAGGCATTTCTTTCGAGAGTAAAATTCAAAGGTTTGAGTTTGTTGTCCTTTCCAGCACCCGTTTGCTTGAGGTAGGTGCTCTCTCTGTATAGGGGGGCCATTCTTGAGAGCTGAATTTTGGTGTAAGCTTTTGTTATACCTCGAGATGTGTTAGCAAACTCAACCATTTTCAGTGAAATATTCCCGTCTATTGTTCTTATCATGATTGCATTTGATCTGCGTTGCATTACTTTTGGTCTTTCCTTACCTCACACGCATTATCGAGGTTACGATGCATCTATCTAATAAATGTGGTATAATGGTATCGGATTCCTGCTTTGCATTACTTATGGCCTTCCCTTACCTCACGCATTATCGAGGCTGCGATGCATATATCTAGTAAATGTGGTTTAATGGTGTCTGGTTCATCATTTTTTCTCACCAGAGAGGATTCTCAGGTGACTTTAGAAGGTTTTGTCTAATTATTCTACATTTTGGGTATTTTTAGCTAGAATAAGGTGATACAAATTGTGTGTGAGATTGTCATCTT

Fln Alignment:

Contig7822___MSCFSCYGTFKGERV----------LKRLEGSKD----GANPASSAQQISRVPXXXXXXXXXXXXXREAPNDGTGHIAAQTFPFRELAAATKNFRPECLLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLSPDKEPLDWNRRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEDFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNNRAAGEHNLVTWARPLFKDRRKFSQMADPLLQGRYPMRGLYQALAVAAMCLQEEAATRPLIADVVTALSYLASQTYDPGVHPVQSSRIAPPTXXXXXXXXXXXXXXXXXDKEREKDKTIKRGDARNL-----IMHAQASPDQ
D5AAA3______________MGCFPCFRSSKKKKKPSKPSKPLKPSKSLKPSKDDSKTGQSAASSTHQPSKDPPDSLKSKPSFDSRKEVSRDGSQHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYRGRLESTGQAVAVKQLDRNGVQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKEPLDWKTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLDEGYHSKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTIKSDVYSFGVVLLELITGRKAIDNSRSAGENNLVAWARPLFKDRRKFSQMADPLLQCRYPMRGLYQALAVAAMCVQEQATMRPLIADVVTALTYLASQTYDPETHPVINSRFGPPT-------------PSRAKRDNEKKLTSSARTNRHLGVHSPSIHAHGSPDQ

SNPs (tot: 71)

Position	A %	C %	G %	T %	Probability
123	20			80	0.995493
124	20		80		0.995493
127		80		20	0.995493
214	16	83			0.994512
218	83			16	0.994512
319		85	14		0.993533
587	80		20		0.995493
589	80			20	0.995493
592	20		80		0.995493
597	80			20	0.995493
712		16		83	0.994512
922	20			80	0.995493
1134	66		33		1.0
1315	11		88		0.923564
1437		10	90		0.90298
1439			90	10	0.90298
1440	90			10	0.90298
1516	10		90		0.90298
1517		10		90	0.90298
1518	10			90	0.90298
1519			90	10	0.90298
1521	88		11		0.923564
1669	75	25			0.996473
1671	75			25	0.996473
1672	75			25	0.996473
1688	20		80		0.995493
1689		80		20	0.995493
1691			20	80	0.995493
1777		75		25	0.996473
1868		16		83	0.994512
1943	85		14		0.993533
2005	12		87		0.992554
2006	12		87		0.992554
2008	87		12		0.992554
2009	87			12	0.992554
2028	85		14		0.993533
2030	14			85	0.993533
2031			88	11	0.923564
2229			10	90	0.90298
2231		10		90	0.90298
2232	10			90	0.90298
2233		10	90		0.90298
2247	90	10			0.90298
2248	90	10			0.90298
2251	90		10		0.90298
2253	90	10			0.90298
2254			70	30	1.0
2255	90		10		0.90298
2256			20	80	0.999996
2257		10		90	0.90298
2258	11		88		0.923564
2260	87			12	0.992554
2261	87	12			0.992554
2263	87		12		0.992554
2266	87	12			0.992554
2267	87		12		0.992554
2268		87	12		0.992554
2269		87	12		0.992554
2457			87	12	0.992554
2570	75	25			1.0
2572	75			25	1.0
2573		25	75		1.0
2574		75	25		1.0
2578	75	25			1.0
2579		25		75	1.0
2582			25	75	1.0
2584		25	75		1.0
2590	75	25			1.0
2591			75	25	1.0
2665		16		66	0.988813
2667	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain