SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7818

Length: 1661 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7818

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	charged multivesicular body protein 5 [Arabidopsis thaliana] gb\|AAF76370.1\| unknown protein [Arabidopsis thaliana] gb\|AAO64794.1\| At3g10640 [Arabidopsis thaliana] dbj\|BAF00173.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE74937.1\| charged multivesi	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Snf7	IPR005024	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10640.1	VPS60.1 SNF7 family protein chr3:3323501-3324905 REVERSE LENGTH=235	74%
RefSeq	Arabidopsis thaliana	NP_187675.2	charged multivesicular body protein 5 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002316482.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LND7

Fln msg:

Fln protein: MLFIISGKMRRVFGAKKDQEPPPSVQDAAEKINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAAMKSANKELKGSLKTMKIEDIDNMQDEMMDLMDISTEIQDSLGRSYSVPDDIDEEDLMGELDALEADMGSETQTDGVPAYLQPDKESDLDSELSLPSAPSGHATVPQANPQITDEFGLPNIPKASLRS*

Protein Length: 245

Fln nts: ATGGGGACTAATAAGATGGATCTTCATCGAAATATCTTCATCGCTTTGTGAAGCGATGGCCTCTCCTACGGATTATCCGGTTACAATTGTTATTCTGGGAGTTAGAGTTTCGATGCTAATTCGCATACTTTGCATTCTACTCCAAAACATTCTGAAATTCATCCCTTCCCGTCAGGGCTGGAATGTTGTAGGGCTTACTTTCCCTCACTCAAATGAGGCGCGAAGCATTCGACTCCTTGGCTGGCGCTACAGGCCTTTTCTTCACTTGATCAACGAATTTATATGAGACCGGTTCTTCGGGTGGCTGTTAATGGCTGTGCATAGACCTTCTGGTTAATGTTTCGTAAATATATTCCGCAAGCCCTAGCTGCTTTAGCCTACAAGGGCTAGTTTTCCTGTTATTGATTTCTGGGCGGGAGGTGGCGCAATCG_-_ATGTTGTTTATCATATCAGGAAAGATGAGGAGAGTTTTTGGAGCCAAGAAGGACCAGGAGCCTCCTCCATCCGTTCAAGATGCTGCTGAAAAGATCAACAAAAGAGGTGACACGGTTGATGAAAAGGTTAAGAAACTCGATATTGAGCTTGCTAGATATAAAGAACAAATAAAGAAGACTAGGCCAGGCCCTGCTCAAGAGGCTATCAAAGCTCGGGCTATGAGGATACTCAAGCAAAAGAGGATGTATGAGGGACAGAGGGAAATGATTTACAATCAAACATTCAATCTTGATCAGGTTTCCTTCGCCACTGAGGGCATCAAGGATGCTCAGAATACGATGGCAGCCATGAAATCTGCCAACAAGGAACTGAAAGGATCGCTTAAGACGATGAAGATTGAGGACATTGATAATATGCAGGATGAGATGATGGACTTAATGGACATAAGTACGGAAATCCAAGACTCACTTGGGAGAAGCTATAGTGTGCCTGATGACATTGATGAGGAAGATCTAATGGGTGAGCTAGATGCCCTGGAAGCTGACATGGGCTCAGAGACCCAAACTGATGGGGTGCCTGCTTATTTACAACCTGATAAGGAGTCTGATCTAGATTCCGAATTGAGCCTGCCTTCAGCACCTTCTGGTCACGCCACAGTTCCACAAGCCAATCCACAGATTACAGATGAGTTTGGGCTGCCAAATATTCCAAAGGCCTCGCTTCGTTCATGA___GCAAGCACATTTTCCAAACTACCAGTGTAGGATATATAGCTGGTCTGGTTAGCATATTTATTGTGGCTGTGCGGTATTAATGATGTCATTTTATATATTTTCCATCGAAGTCATTTATAGCTTTATCTCACATTGTCATATTGAGCTTTCAGAGTAGATATCTCGTTTGCCGGAGACAATATGATCTTTGGAGCGTATGCTATATTTTGTTGCTTCTATCATCTGTTTCTATTCAGAGCATCAGTGTTTGTTGTAATTCATATTTATGTTTTTCCCAGCTACTTGTATGATAGAAGTTTTAAAATCCCAGACCATATATATGAAGTGTTCAAGATCTCAGGGTATTGCAGACTGCATTGAAATGAATTTCATAAATAATAATAAAGGGTTTGATCCACACAAACTCTATCAAAAGCTCTTTGGCTCTTTGGGGAAGGCCTTTCTCCTACTTAGTACGAAGATGTGTCATTCTATTAAATACAAAACTCACATAAGAAT

Fln Alignment:

Contig7818___MRRVFGAKKDQEPPPSVQDAAEKINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAAMKSANKELKGSLKTMKIEDIDNMQDEMMDLMDISTEIQDSLGRSYSVPDDIDEEDLMGELDALEADMGSETQTDGVPAYLQXXXXXXXXXXXXXXXXXXGHATVPQANPQITDEFGLPNIPKASLRS
B8LND7______________MRRVFGVKKDKEPPPSVQDAAERINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAALKSANKELKGSLKTMKIEDIDNMQDEMMDLMDISTEIQDSLGRSYSVPDDIDEDELMGELDALEADMGSETQTDGVPAYLQPDKESDLDSELNLPSAPSGRATVPQANQQTTDEFGLPTVPRASLRT

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
160	40	60			1.0
163		60	40		1.0
164		60		40	1.0
175	10		90		0.90298
188	30		70		1.0
386	20		80		0.995493
712	83			16	0.994512
713	83			16	0.994512
739		16		83	0.994512
899		20		80	0.995493
918	20		80		0.995493
979		87		12	0.992554
1323	90			10	0.90298
1324			90	10	0.90298
1325	90			10	0.90298
1333		10		90	0.90298
1389			17	82	1.0
1554	22		77		0.999999
1565	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain